Clone Sequence Records
BS17078.3prime Sequence
931 bp (772 high quality bases) assembled on 2007-05-15
> BS17078.3prime
ATGGTCTAGAAAGCTTTTAGATGGTCTCCTCGTCGGTGTCCGCCTCGCAG
GTTTCCAAATTGATTTCCGTAAGCTCCTGTTCATCCACCACACTTCTGGC
GTCCAGATCACCAGTCTCCATTTTGGGGACACTCAGGATTTCATCCTGCT
CCTGCGACTCCTTGGCAGCCTCCTCCAAAGCTCCTCCCTGCTCAAACATC
GGATTGTCAAAGGCTCGCTCCCTCACCTCGCCACTTTCCGGATCGTAAGC
CATAATTCCCAGACGATCCACACCAGAAGCTCCTCCTTCACTGGATCCAC
CCTCTGCGCCACCATTGTCGAAGCGGTTAAACAGCAGATTCCGGCGCAGT
CTCAATCCCAAGTGACGCCACCTCCAAAGACGGGGGTCGTGGATCCACTG
TGGTATGCGGTTTAGGTAGGGGTTCTCAGGCATAAAGTGCGCCAAAATGA
CCACAGAAACCAGACCCACCAGTGCCATGCAGAAAAGGATGAGAACAATC
GAGGAGAAGCTAACATTCGGATTATAGGGTCGACCAGAAACTTTTAACGT
TGTTCCTGTCTTGTTCCAATTGTGTTCGTTTTGCTGTAGAAACTCCAAGC
TCCGTTCACTATATTTATGGCGATCAGTTACCACCGCCTGCAGGCAGTTT
CCAAACTTCTGGGAGCCCACAAACTCCACGTGTAGGCCGATCTGATCCTT
CAGGCTCTCCTGGCTGATGAGGTTACTTATCTGGGCCACCAACTCCTTTC
TACTGCCCTCGGTGCAGTGGGTCGTGGGCGTGGATAGAATGGCCCCGCAG
ATTAAGCAGCACGATCCCAAGGGTCGAAACTGGAGACAGCAGTGGGGCGT
CTCGCACTGCTCCTGGACATTATGGCAAACGGGTTCCAGCAGTCGCTCGA
AGTCCTTGTGGCAGCCACACAGCTCTCCTCT
BS17078.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:00:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11592-PA | 1518 | CG11592-RA | 707..1518 | 828..17 | 4035 | 99.8 | Minus |
| CG11592-PA | 1518 | CG11592-RA | 604..697 | 931..838 | 470 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:15:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Amnionless-RB | 1893 | CG11592-RB | 829..1743 | 931..17 | 4515 | 99.7 | Minus |
| Amnionless-RA | 1681 | CG11592-RA | 617..1531 | 931..17 | 4515 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:15:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 287402..288316 | 17..931 | 4465 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:15:21 has no hits.
BS17078.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:00:50 Download gff for
BS17078.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11592-PA | 604..1518 | 17..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:50:39 Download gff for
BS17078.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11592-RA | 617..1541 | 8..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:00:04 Download gff for
BS17078.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amnionless-RA | 617..1541 | 8..931 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:00:04 Download gff for
BS17078.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 287392..288316 | 8..931 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:50:39 Download gff for
BS17078.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 287392..288316 | 8..931 | 99 | | Plus |
BS17078.5prime Sequence
880 bp (817 high quality bases) assembled on 2007-05-15
> BS17078.5prime
GAAGTTATCAGTCGACATGGGTTTGCATTGGCAATGGCTGATCTGGGCAT
TGGTGGGGCTCCATGTGGCACTGGCCACCAAGTGGTATGGCGGTGGAATG
GACTTCAATGATCCCACCGCCTGGCTAGATGACCACTTGCCTTGTGCACA
GGATTTGGTCGTTTTTCCAGAGTACTACCCAGCTCTGCTGCCCTTGCCCG
AGGACATATCCATTGATGGCTTGGTTTTCCCCAGAGAAGGGGCGATCCTT
TTGGCAGAGGAATCCACCATTACCTTTGGATCTGATAAGCAGCCCTCCTG
TGAGAGCGATGAGAATAAGGCCTATTTGAAGCCACCGAAGTCGAGTAAAT
GGTTCGATCCTGGCACCTGGACGGACAAATCTAAGGAATTTTCCACATTC
ACACCAGAGCTGGAGAGGATTCCCTGTGATGACGAGCAGGTCATAATCAA
GGGGCACGGACCATTGGCCTTTGACCTAGAAAACGTGCAGTATCTGAGGC
TGGGACAGCTTATTCTGGCTGGTTCTTCCATTTCCAAAACGTACTTGGAG
CAACTTATCAGCAGAGATCTGGGCCAGTTTCTCTTTTACAATGCCGAGTA
CGTCCAGGTGGAGTACTACAGAGGAGAGCTGTGTGGCTGCCACAAGGACT
TCGAGCGACTGCTGGAACCCGTTTGCCATAATGTCCAGGAGCAGTGCGAG
ACGCCCCACTGCTTGTCTCCAGTTCGACCCTTGGGATCGTGCTGCCTAAT
CTGCGGGGCCATTCTATCCACGCCCACGACCCACTGCACCGAGGGCAGTA
GAAAGGAGTTGGTGGCCCAGATAAGTAACCTCATCAGCCAGGAGAGCCTG
AANGATCAGATCNGCCTACACGTGGAGTTT
BS17078.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:56:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11592-PA | 1518 | CG11592-RA | 1..864 | 17..880 | 4282 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:13:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Amnionless-RB | 1893 | CG11592-RB | 226..1089 | 17..880 | 4298 | 99.8 | Plus |
| Amnionless-RA | 1681 | CG11592-RA | 14..877 | 17..880 | 4298 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:13:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 288056..288919 | 880..17 | 4298 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:13:34 has no hits.
BS17078.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:56:37 Download gff for
BS17078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11592-PA | 1..864 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:30:22 Download gff for
BS17078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11592-RA | 8..877 | 12..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:44:04 Download gff for
BS17078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amnionless-RA | 8..877 | 12..880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:44:04 Download gff for
BS17078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 288056..288925 | 12..880 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:30:22 Download gff for
BS17078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 288056..288925 | 12..880 | 99 | | Minus |
BS17078.complete Sequence
1550 bp assembled on 2007-05-08
GenBank Submission: FJ638247
> BS17078.complete
GAAGTTATCAGTCGACATGGGTTTGCATTGGCAATGGCTGATCTGGGCAT
TGGTGGGGCTCCATGTGGCACTGGCCACCAAGTGGTATGGCGGTGGAATG
GACTTCAATGATCCCACCGCCTGGCTAGATGACCACTTGCCTTGTGCACA
GGATTTGGTCGTTTTTCCAGAGTACTACCCAGCTCTGCTGCCCTTGCCCG
AGGACATATCCATTGATGGCTTGGTTTTCCCCAGAGAAGGGGCGATCCTT
TTGGCAGAGGAATCCACCATTACCTTTGGATCTGATAAGCAGCCCTCCTG
TGAGAGCGATGAGAATAAGGCCTATTTGAAGCCACCGAAGTCGAGTAAAT
GGTTCGATCCTGGCACCTGGACGGACAAATCTAAGGAATTTTCCACATTC
ACACCAGAGCTGGAGAGGATTCCCTGTGATGACGAGCAGGTCATAATCAA
GGGGCACGGACCATTGGCCTTTGACCTAGAAAACGTGCAGTATCTGAGGC
TGGGACAGCTTATTCTGGCTGGTTCTTCCATTTCCAAAACGTACTTGGAG
CAACTTATCAGCAGAGATCTGGGCCAGTTTCTCTTTTACAATGCCGAGTA
CGTCCAGGTGGAGTACTACAGAGGAGAGCTGTGTGGCTGCCACAAGGACT
TCGAGCGACTGCTGGAACCCGTTTGCCATAATGTCCAGGAGCAGTGCGAG
ACGCCCCACTGCTTGTCTCCAGTTCGACCCTTGGGATCGTGCTGCCTAAT
CTGCGGGGCCATTCTATCCACGCCCACGACCCACTGCACCGAGGGCAGTA
GAAAGGAGTTGGTGGCCCAGATAAGTAACCTCATCAGCCAGGAGAGCCTG
AAGGATCAGATCGGCCTACACGTGGAGTTTGTGGGCTCCCAGAAGTTTGG
AAACTGCCTGCAGGCGGTGGTAACTGATCGCCATAAATATAGTGAACGGA
GCTTGGAGTTTCTACAGCAAAACGAACACAATTGGAACAAGACAGGAACA
ACGTTAAAAGTTTCTGGTCGACCCTATAATCCGAATGTTAGCTTCTCCTC
GATTGTTCTCATCCTTTTCTGCATGGCACTGGTGGGTCTGGTTTCTGTGG
TCATTTTGGCGCACTTTATGCCTGAGAACCCCTACCTAAACCGCATACCA
CAGTGGATCCACGACCCCCGTCTTTGGAGGTGGCGTCACTTGGGATTGAG
ACTGCGCCGGAATCTGCTGTTTAACCGCTTCGACAATGGTGGCGCAGAGG
GTGGATCCAGTGAAGGAGGAGCTTCTGGTGTGGATCGTCTGGGAATTATG
GCTTACGATCCGGAAAGTGGCGAGGTGAGGGAGCGAGCCTTTGACAATCC
GATGTTTGAGCAGGGAGGAGCTTTGGAGGAGGCTGCCAAGGAGTCGCAGG
AGCAGGATGAAATCCTGAGTGTCCCCAAAATGGAGACTGGTGATCTGGAC
GCCAGAAGTGTGGTGGATGAACAGGAGCTTACGGAAATCAATTTGGAAAC
CTGCGAGGCGGACACCGACGAGGAGACCATCTAAAAGCTTTCTAGACCAT
BS17078.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:41:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Amnionless-RB | 1518 | CG11592-PB | 1..1518 | 17..1534 | 7590 | 100 | Plus |
| Amnionless-RA | 1518 | CG11592-PA | 1..1518 | 17..1534 | 7590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:41:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Amnionless-RB | 1893 | CG11592-RB | 226..1743 | 17..1534 | 7590 | 100 | Plus |
| Amnionless-RA | 1681 | CG11592-RA | 14..1531 | 17..1534 | 7590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:41:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 287402..288919 | 1534..17 | 7590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:41:04 has no hits.
BS17078.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:01 Download gff for
BS17078.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11592-RA | 1..1518 | 17..1534 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:00:59 Download gff for
BS17078.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11592-RA | 1..1528 | 17..1543 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:41:51 Download gff for
BS17078.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11592-RA | 14..1529 | 17..1532 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:01 Download gff for
BS17078.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11592-RA | 1..1528 | 17..1543 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:25 Download gff for
BS17078.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amnionless-RA | 14..1529 | 17..1532 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:25 Download gff for
BS17078.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 287404..288919 | 17..1532 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:41:51 Download gff for
BS17078.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 287404..288919 | 17..1532 | 100 | | Minus |
BS17078.pep Sequence
Translation from 16 to 1533
> BS17078.pep
MGLHWQWLIWALVGLHVALATKWYGGGMDFNDPTAWLDDHLPCAQDLVVF
PEYYPALLPLPEDISIDGLVFPREGAILLAEESTITFGSDKQPSCESDEN
KAYLKPPKSSKWFDPGTWTDKSKEFSTFTPELERIPCDDEQVIIKGHGPL
AFDLENVQYLRLGQLILAGSSISKTYLEQLISRDLGQFLFYNAEYVQVEY
YRGELCGCHKDFERLLEPVCHNVQEQCETPHCLSPVRPLGSCCLICGAIL
STPTTHCTEGSRKELVAQISNLISQESLKDQIGLHVEFVGSQKFGNCLQA
VVTDRHKYSERSLEFLQQNEHNWNKTGTTLKVSGRPYNPNVSFSSIVLIL
FCMALVGLVSVVILAHFMPENPYLNRIPQWIHDPRLWRWRHLGLRLRRNL
LFNRFDNGGAEGGSSEGGASGVDRLGIMAYDPESGEVRERAFDNPMFEQG
GALEEAAKESQEQDEILSVPKMETGDLDARSVVDEQELTEINLETCEADT
DEETI*
BS17078.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Amnionless-PB | 505 | CG11592-PB | 1..505 | 1..505 | 2710 | 100 | Plus |
| Amnionless-PA | 505 | CG11592-PA | 1..505 | 1..505 | 2710 | 100 | Plus |
