Clone Sequence Records
BS17079.3prime Sequence
321 bp (321 high quality bases) assembled on 2007-05-15
> BS17079.3prime
ATGGTCTAGAAAGCTTCTACAGTGCCCAGTGGCGTCCGTGTTTCACCTGC
AAGCTCAGCAGGAGTCGCTGTAACCGCTCCTTTCCCTCGTATAAGCTTCT
TTGCTTGTCCAGCCGAAGGGTCACCAGGCGGCGCTGTAGGTGAGTCAGCT
GCTCCCGGATCCACACGTGGTTCGCCTGCAGGCGCAGCACCATCGCTACC
AAATTCTCAGGCTGACCCACTTTCTCCAATTCTCCGTGCTCATCCATGTC
CTCGCCGAAGTCCAGTTCCATATCTATGCCTGCGACGGCTGTGGAATGCG
CGTCCATGTCGACTGATAACT
BS17079.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:58:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12589-PA | 291 | CG12589-RA | 1..291 | 307..17 | 1455 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:07:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12589-RC | 1814 | CG12589-RC | 1394..1684 | 307..17 | 1455 | 100 | Minus |
CG12589-RB | 471 | CG12589-RB | 51..341 | 307..17 | 1455 | 100 | Minus |
CG12589-RA | 517 | CG12589-RA | 97..387 | 307..17 | 1455 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:07:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5137187..5137477 | 17..307 | 1455 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:07:41 has no hits.
BS17079.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:58:29 Download gff for
BS17079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12589-PA | 1..291 | 17..307 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:28:07 Download gff for
BS17079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12589-RA | 85..387 | 17..317 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:38:07 Download gff for
BS17079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12589-RA | 85..387 | 17..317 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:38:07 Download gff for
BS17079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5137187..5137489 | 17..317 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:28:07 Download gff for
BS17079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 962909..963211 | 17..317 | 99 | | Plus |
BS17079.complete Sequence
323 bp assembled on 2007-05-08
GenBank Submission: FJ638248
> BS17079.complete
GAAGTTATCAGTCGACATGGACGCGCATTCCACAGCCGTCGCAGGCATAG
ATATGGAACTGGACTTCGGCGAGGACATGGATGAGCACGGAGAATTGGAG
AAAGTGGGTCAGCCTGAGAATTTGGTAGCGATGGTGCTGCGCCTGCAGGC
GAACCACGTGTGGATCCGGGAGCAGCTGACTCACCTACAGCGCCGCCTGG
TGACCCTTCGGCTGGACAAGCAAAGAAGCTTATACGAGGGAAAGGAGCGG
TTACAGCGACTCCTGCTGAGCTTGCAGGTGAAACACGGACGCCACTGGGC
ACTGTAGAAGCTTTCTAGACCAT
BS17079.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:31:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12589-RC | 291 | CG12589-PC | 1..291 | 17..307 | 1455 | 100 | Plus |
CG12589-RB | 291 | CG12589-PB | 1..291 | 17..307 | 1455 | 100 | Plus |
CG12589-RA | 291 | CG12589-PA | 1..291 | 17..307 | 1455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:32:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12589-RC | 1814 | CG12589-RC | 1394..1684 | 17..307 | 1455 | 100 | Plus |
CG12589-RB | 471 | CG12589-RB | 51..341 | 17..307 | 1455 | 100 | Plus |
CG12589-RA | 517 | CG12589-RA | 97..387 | 17..307 | 1455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:31:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5137187..5137477 | 307..17 | 1455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:31:58 has no hits.
BS17079.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:23 Download gff for
BS17079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12589-RA | 1..291 | 17..307 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:03 Download gff for
BS17079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12589-RA | 1..291 | 17..307 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:12:26 Download gff for
BS17079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12589-RA | 97..387 | 17..307 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:24 Download gff for
BS17079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12589-RA | 1..291 | 17..307 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:24:21 Download gff for
BS17079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12589-RA | 97..387 | 17..307 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:24:21 Download gff for
BS17079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5137187..5137477 | 17..307 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:12:26 Download gff for
BS17079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 962909..963199 | 17..307 | 100 | | Minus |
BS17079.5prime Sequence
321 bp (321 high quality bases) assembled on 2007-05-15
> BS17079.5prime
GAAGTTATCAGTCGACATGGACGCGCATTCCACAGCCGTCGCAGGCATAG
ATATGGAACTGGACTTCGGCGAGGACATGGATGAGCACGGAGAATTGGAG
AAAGTGGGTCAGCCTGAGAATTTGGTAGCGATGGTGCTGCGCCTGCAGGC
GAACCACGTGTGGATCCGGGAGCAGCTGACTCACCTACAGCGCCGCCTGG
TGACCCTTCGGCTGGACAAGCAAAGAAGCTTATACGAGGGAAAGGAGCGG
TTACAGCGACTCCTGCTGAGCTTGCAGGTGAAACACGGACGCCACTGGGC
ACTGTAGAAGCTTTCTAGACC
BS17079.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:54:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12589-PA | 291 | CG12589-RA | 1..291 | 17..307 | 1455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:45:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12589-RC | 1814 | CG12589-RC | 1394..1684 | 17..307 | 1455 | 100 | Plus |
CG12589-RB | 471 | CG12589-RB | 51..341 | 17..307 | 1455 | 100 | Plus |
CG12589-RA | 517 | CG12589-RA | 97..387 | 17..307 | 1455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:45:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5137187..5137477 | 307..17 | 1455 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:45:28 has no hits.
BS17079.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:54:43 Download gff for
BS17079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12589-PA | 1..291 | 17..307 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:48:42 Download gff for
BS17079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12589-RA | 85..387 | 7..307 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:20:37 Download gff for
BS17079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12589-RA | 85..387 | 7..307 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:20:37 Download gff for
BS17079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5137187..5137489 | 7..307 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:48:42 Download gff for
BS17079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 962909..963211 | 7..307 | 99 | | Minus |
BS17079.pep Sequence
Translation from 16 to 306
> BS17079.pep
MDAHSTAVAGIDMELDFGEDMDEHGELEKVGQPENLVAMVLRLQANHVWI
REQLTHLQRRLVTLRLDKQRSLYEGKERLQRLLLSLQVKHGRHWAL*
BS17079.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:39:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12589-PC | 96 | CG12589-PC | 1..96 | 1..96 | 494 | 100 | Plus |
CG12589-PB | 96 | CG12589-PB | 1..96 | 1..96 | 494 | 100 | Plus |
CG12589-PA | 96 | CG12589-PA | 1..96 | 1..96 | 494 | 100 | Plus |