Clone BS17079 Report

Search the DGRC for BS17079

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:170
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptCG12589-RA
Protein status:BS17079.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS17079.3prime Sequence

321 bp (321 high quality bases) assembled on 2007-05-15

> BS17079.3prime
ATGGTCTAGAAAGCTTCTACAGTGCCCAGTGGCGTCCGTGTTTCACCTGC
AAGCTCAGCAGGAGTCGCTGTAACCGCTCCTTTCCCTCGTATAAGCTTCT
TTGCTTGTCCAGCCGAAGGGTCACCAGGCGGCGCTGTAGGTGAGTCAGCT
GCTCCCGGATCCACACGTGGTTCGCCTGCAGGCGCAGCACCATCGCTACC
AAATTCTCAGGCTGACCCACTTTCTCCAATTCTCCGTGCTCATCCATGTC
CTCGCCGAAGTCCAGTTCCATATCTATGCCTGCGACGGCTGTGGAATGCG
CGTCCATGTCGACTGATAACT

BS17079.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:58:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG12589-PA 291 CG12589-RA 1..291 307..17 1455 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:07:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG12589-RC 1814 CG12589-RC 1394..1684 307..17 1455 100 Minus
CG12589-RB 471 CG12589-RB 51..341 307..17 1455 100 Minus
CG12589-RA 517 CG12589-RA 97..387 307..17 1455 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:07:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5137187..5137477 17..307 1455 100 Plus
Blast to na_te.dros performed on 2015-02-11 04:07:41 has no hits.

BS17079.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:58:29 Download gff for BS17079.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12589-PA 1..291 17..307 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:28:07 Download gff for BS17079.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12589-RA 85..387 17..317 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:38:07 Download gff for BS17079.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12589-RA 85..387 17..317 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:38:07 Download gff for BS17079.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5137187..5137489 17..317 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:28:07 Download gff for BS17079.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 962909..963211 17..317 99   Plus

BS17079.complete Sequence

323 bp assembled on 2007-05-08

GenBank Submission: FJ638248

> BS17079.complete
GAAGTTATCAGTCGACATGGACGCGCATTCCACAGCCGTCGCAGGCATAG
ATATGGAACTGGACTTCGGCGAGGACATGGATGAGCACGGAGAATTGGAG
AAAGTGGGTCAGCCTGAGAATTTGGTAGCGATGGTGCTGCGCCTGCAGGC
GAACCACGTGTGGATCCGGGAGCAGCTGACTCACCTACAGCGCCGCCTGG
TGACCCTTCGGCTGGACAAGCAAAGAAGCTTATACGAGGGAAAGGAGCGG
TTACAGCGACTCCTGCTGAGCTTGCAGGTGAAACACGGACGCCACTGGGC
ACTGTAGAAGCTTTCTAGACCAT

BS17079.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:31:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG12589-RC 291 CG12589-PC 1..291 17..307 1455 100 Plus
CG12589-RB 291 CG12589-PB 1..291 17..307 1455 100 Plus
CG12589-RA 291 CG12589-PA 1..291 17..307 1455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:32:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG12589-RC 1814 CG12589-RC 1394..1684 17..307 1455 100 Plus
CG12589-RB 471 CG12589-RB 51..341 17..307 1455 100 Plus
CG12589-RA 517 CG12589-RA 97..387 17..307 1455 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:31:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5137187..5137477 307..17 1455 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:31:58 has no hits.

BS17079.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:23 Download gff for BS17079.complete
Subject Subject Range Query Range Percent Splice Strand
CG12589-RA 1..291 17..307 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:03 Download gff for BS17079.complete
Subject Subject Range Query Range Percent Splice Strand
CG12589-RA 1..291 17..307 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:12:26 Download gff for BS17079.complete
Subject Subject Range Query Range Percent Splice Strand
CG12589-RA 97..387 17..307 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:24 Download gff for BS17079.complete
Subject Subject Range Query Range Percent Splice Strand
CG12589-RA 1..291 17..307 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:24:21 Download gff for BS17079.complete
Subject Subject Range Query Range Percent Splice Strand
CG12589-RA 97..387 17..307 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:24:21 Download gff for BS17079.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5137187..5137477 17..307 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:12:26 Download gff for BS17079.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 962909..963199 17..307 100   Minus

BS17079.5prime Sequence

321 bp (321 high quality bases) assembled on 2007-05-15

> BS17079.5prime
GAAGTTATCAGTCGACATGGACGCGCATTCCACAGCCGTCGCAGGCATAG
ATATGGAACTGGACTTCGGCGAGGACATGGATGAGCACGGAGAATTGGAG
AAAGTGGGTCAGCCTGAGAATTTGGTAGCGATGGTGCTGCGCCTGCAGGC
GAACCACGTGTGGATCCGGGAGCAGCTGACTCACCTACAGCGCCGCCTGG
TGACCCTTCGGCTGGACAAGCAAAGAAGCTTATACGAGGGAAAGGAGCGG
TTACAGCGACTCCTGCTGAGCTTGCAGGTGAAACACGGACGCCACTGGGC
ACTGTAGAAGCTTTCTAGACC

BS17079.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:54:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG12589-PA 291 CG12589-RA 1..291 17..307 1455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:45:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG12589-RC 1814 CG12589-RC 1394..1684 17..307 1455 100 Plus
CG12589-RB 471 CG12589-RB 51..341 17..307 1455 100 Plus
CG12589-RA 517 CG12589-RA 97..387 17..307 1455 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:45:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5137187..5137477 307..17 1455 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:45:28 has no hits.

BS17079.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:54:43 Download gff for BS17079.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12589-PA 1..291 17..307 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:48:42 Download gff for BS17079.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12589-RA 85..387 7..307 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:20:37 Download gff for BS17079.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12589-RA 85..387 7..307 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:20:37 Download gff for BS17079.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5137187..5137489 7..307 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:48:42 Download gff for BS17079.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 962909..963211 7..307 99   Minus

BS17079.pep Sequence

Translation from 16 to 306

> BS17079.pep
MDAHSTAVAGIDMELDFGEDMDEHGELEKVGQPENLVAMVLRLQANHVWI
REQLTHLQRRLVTLRLDKQRSLYEGKERLQRLLLSLQVKHGRHWAL*

BS17079.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:39:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG12589-PC 96 CG12589-PC 1..96 1..96 494 100 Plus
CG12589-PB 96 CG12589-PB 1..96 1..96 494 100 Plus
CG12589-PA 96 CG12589-PA 1..96 1..96 494 100 Plus