Clone Sequence Records
BS17080.5prime Sequence
234 bp (234 high quality bases) assembled on 2007-05-15
> BS17080.5prime
GAAGTTATCAGTCGACATGCCAGCGGGTCGAGTGGCTGGCAAGGCCGGCT
ACTCCAATCACTACTACAATGGACGCTCCTATGTGGGCATCAACGAGGAG
ATCATGTGGGTAAGCATCGGCATGGGCGTGACCATAGTGCTCCTGATCAC
GATCGCCTTGTGCTACATTGCGCGCGAGAAGTGCCAGAAGAGGCAGCGGG
AGTACTACGTGACCGCATAGAAGCTTTCTAGACC
BS17080.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:54:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12994-PA | 204 | CG12994-RA | 1..204 | 17..220 | 1020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:45:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12994-RA | 1165 | CG12994-RA | 426..629 | 17..220 | 1020 | 100 | Plus |
| CG17193-RC | 3568 | CG17193-RC | 269..386 | 87..207 | 265 | 81.8 | Plus |
| CG17193-RB | 3915 | CG17193-RB | 616..733 | 87..207 | 265 | 81.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:45:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17422856..17423005 | 220..71 | 750 | 100 | Minus |
| X | 23542271 | X | 17423071..17423126 | 72..17 | 280 | 100 | Minus |
| 3R | 32079331 | 3R | 20039616..20039720 | 191..87 | 240 | 81.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:45:10 has no hits.
BS17080.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:54:47 Download gff for
BS17080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12994-PA | 1..204 | 17..220 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:17:20 Download gff for
BS17080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12994-RA | 419..634 | 8..226 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:42:02 Download gff for
BS17080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12994-RA | 419..634 | 8..226 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:42:02 Download gff for
BS17080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17422851..17423004 | 72..226 | 98 | <- | Minus |
| X | 17423072..17423133 | 8..71 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:17:20 Download gff for
BS17080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17316884..17317037 | 72..226 | 98 | <- | Minus |
| arm_X | 17317105..17317166 | 8..71 | 93 | | Minus |
BS17080.3prime Sequence
234 bp (234 high quality bases) assembled on 2007-05-15
> BS17080.3prime
ATGGTCTAGAAAGCTTCTATGCGGTCACGTAGTACTCCCGCTGCCTCTTC
TGGCACTTCTCGCGCGCAATGTAGCACAAGGCGATCGTGATCAGGAGCAC
TATGGTCACGCCCATGCCGATGCTTACCCACATGATCTCCTCGTTGATGC
CCACATAGGAGCGTCCATTGTAGTAGTGATTGGAGTAGCCGGCCTTGCCA
GCCACTCGACCCGCTGGCATGTCGACTGATAACT
BS17080.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:58:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12994-PA | 204 | CG12994-RA | 1..204 | 220..17 | 1020 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:55:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12994-RA | 1165 | CG12994-RA | 426..629 | 220..17 | 1020 | 100 | Minus |
| CG17193-RC | 3568 | CG17193-RC | 269..386 | 150..30 | 265 | 81.8 | Minus |
| CG17193-RB | 3915 | CG17193-RB | 616..733 | 150..30 | 265 | 81.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:55:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17422856..17423005 | 17..166 | 750 | 100 | Plus |
| X | 23542271 | X | 17423071..17423126 | 165..220 | 280 | 100 | Plus |
| 3R | 32079331 | 3R | 20039616..20039720 | 46..150 | 240 | 81.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:55:02 has no hits.
BS17080.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:58:37 Download gff for
BS17080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12994-PA | 1..204 | 17..220 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:23:52 Download gff for
BS17080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12994-RA | 419..634 | 11..229 | 96 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:16:36 Download gff for
BS17080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12994-RA | 419..634 | 11..229 | 96 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:16:36 Download gff for
BS17080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17422851..17423004 | 11..165 | 98 | <- | Plus |
| X | 17423072..17423133 | 166..229 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:23:52 Download gff for
BS17080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17316884..17317037 | 11..165 | 98 | <- | Plus |
| arm_X | 17317105..17317166 | 166..229 | 93 | | Plus |
BS17080.complete Sequence
236 bp assembled on 2007-05-08
GenBank Submission: FJ638249
> BS17080.complete
GAAGTTATCAGTCGACATGCCAGCGGGTCGAGTGGCTGGCAAGGCCGGCT
ACTCCAATCACTACTACAATGGACGCTCCTATGTGGGCATCAACGAGGAG
ATCATGTGGGTAAGCATCGGCATGGGCGTGACCATAGTGCTCCTGATCAC
GATCGCCTTGTGCTACATTGCGCGCGAGAAGTGCCAGAAGAGGCAGCGGG
AGTACTACGTGACCGCATAGAAGCTTTCTAGACCAT
BS17080.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:28:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12994-RA | 204 | CG12994-PA | 1..204 | 17..220 | 1020 | 100 | Plus |
| CG17193-RC | 207 | CG17193-PC | 77..181 | 87..191 | 240 | 81.9 | Plus |
| CG17193-RB | 207 | CG17193-PB | 77..181 | 87..191 | 240 | 81.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:28:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12994-RA | 1165 | CG12994-RA | 426..629 | 17..220 | 1020 | 100 | Plus |
| CG17193-RC | 3568 | CG17193-RC | 269..373 | 87..191 | 240 | 81.9 | Plus |
| CG17193-RB | 3915 | CG17193-RB | 616..720 | 87..191 | 240 | 81.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:28:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17422856..17423005 | 220..71 | 750 | 100 | Minus |
| X | 23542271 | X | 17423071..17423126 | 72..17 | 280 | 100 | Minus |
| 3R | 32079331 | 3R | 20039616..20039720 | 191..87 | 240 | 81.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:28:06 has no hits.
BS17080.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:02 Download gff for
BS17080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12994-RA | 1..204 | 17..220 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:01 Download gff for
BS17080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12994-RA | 419..634 | 8..226 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:15:50 Download gff for
BS17080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12994-RA | 426..629 | 17..220 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:02 Download gff for
BS17080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12994-RA | 419..634 | 8..226 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:11:15 Download gff for
BS17080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12994-RA | 426..629 | 17..220 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:11:15 Download gff for
BS17080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17422856..17423004 | 72..220 | 100 | <- | Minus |
| X | 17423072..17423126 | 17..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:15:50 Download gff for
BS17080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17316889..17317037 | 72..220 | 100 | <- | Minus |
| arm_X | 17317105..17317159 | 17..71 | 100 | | Minus |
BS17080.pep Sequence
Translation from 16 to 219
> BS17080.pep
MPAGRVAGKAGYSNHYYNGRSYVGINEEIMWVSIGMGVTIVLLITIALCY
IAREKCQKRQREYYVTA*
BS17080.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12994-PA | 67 | CG12994-PA | 1..67 | 1..67 | 353 | 100 | Plus |
| CG17193-PC | 68 | CG17193-PC | 5..68 | 4..67 | 216 | 69.2 | Plus |
| CG17193-PB | 68 | CG17193-PB | 5..68 | 4..67 | 216 | 69.2 | Plus |
| CG17193-PA | 68 | CG17193-PA | 5..68 | 4..67 | 216 | 69.2 | Plus |
