Clone Sequence Records
BS17089.3prime Sequence
320 bp (320 high quality bases) assembled on 2007-05-15
> BS17089.3prime
ATGGTCTAGAAAGCTTTTAACACATCCCGCTGGTTTGCTGATAGTGCAGA
ATTTGAGATCGGCATCAAAGAATTGCCCGGTCTTGCAGCTTTTGATTAGA
GCCCTCGTTGAGTCATTGACTTTATAACAATAGACGTAGCTGACGCATGT
GGAGTCATTCTGGTTCGCTATTATGACCGATTTATCCACATTCTGACACG
CCTCATCCGCACTCCAGGTGCCCGCGTCCAGATCCTTTAGCGCAGGCGCG
GCCCCGGCAAGCAGGCAGTGGACCAGGAGCAGTGATACAATTAGACTCGT
CCACATGTCGACTGATAACT
BS17089.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:01:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14957-PA | 291 | CG14957-RA | 1..287 | 306..20 | 1435 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:30:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14957-RA | 423 | CG14957-RA | 17..303 | 306..20 | 1435 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:30:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3187668..3187808 | 280..140 | 705 | 100 | Minus |
3L | 28110227 | 3L | 3187863..3187986 | 143..20 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:30:34 has no hits.
BS17089.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:01:09 Download gff for
BS17089.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14957-PA | 1..291 | 17..306 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:50:25 Download gff for
BS17089.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14957-RA | 5..307 | 17..319 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:45:16 Download gff for
BS17089.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14957-RA | 5..307 | 17..319 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:45:16 Download gff for
BS17089.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3187669..3187808 | 140..279 | 100 | -> | Minus |
3L | 3187867..3187990 | 17..139 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:50:25 Download gff for
BS17089.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3187669..3187808 | 140..279 | 100 | -> | Minus |
arm_3L | 3187867..3187990 | 17..139 | 99 | | Minus |
BS17089.5prime Sequence
321 bp (321 high quality bases) assembled on 2007-05-15
> BS17089.5prime
GAAGTTATCAGTCGACATGTGGACGAGTCTAATTGTATCACTGCTCCTGG
TCCACTGCCTGCTTGCCGGGGCCGCGCCTGCGCTAAAGGATCTGGACGCG
GGCACCTGGAGTGCGGATGAGGCGTGTCAGAATGTGGATAAATCGGTCAT
AATAGCGAACCAGAATGACTCCACATGCGTCAGCTACGTCTATTGTTATA
AAGTCAATGACTCAACGAGGGCTCTAATCAAAAGCTGCAAGACCGGGCAA
TTCTTTGATGCCGATCTCAAATTCTGCACTATCAGCAAACCAGCGGGATG
TGTCTAAAAGCTTTCTAGACC
BS17089.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:56:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14957-PA | 291 | CG14957-RA | 1..291 | 17..307 | 1455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:29:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14957-RA | 423 | CG14957-RA | 17..307 | 17..307 | 1455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:29:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3187668..3187808 | 43..183 | 705 | 100 | Plus |
3L | 28110227 | 3L | 3187863..3187990 | 180..307 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:29:42 has no hits.
BS17089.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:56:55 Download gff for
BS17089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14957-PA | 1..291 | 17..307 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:42:46 Download gff for
BS17089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14957-RA | 5..307 | 4..307 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:33:15 Download gff for
BS17089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14957-RA | 5..307 | 4..307 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:33:15 Download gff for
BS17089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3187669..3187808 | 44..183 | 100 | -> | Plus |
3L | 3187867..3187990 | 184..307 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:42:46 Download gff for
BS17089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3187669..3187808 | 44..183 | 100 | -> | Plus |
arm_3L | 3187867..3187990 | 184..307 | 100 | | Plus |
BS17089.complete Sequence
323 bp assembled on 2007-05-08
GenBank Submission: FJ638250
> BS17089.complete
GAAGTTATCAGTCGACATGTGGACGAGTCTAATTGTATCACTGCTCCTGG
TCCACTGCCTGCTTGCCGGGGCCGCGCCTGCGCTAAAGGATCTGGACGCG
GGCACCTGGAGTGCGGATGAGGCGTGTCAGAATGTGGATAAATCGGTCAT
AATAGCGAACCAGAATGACTCCACATGCGTCAGCTACGTCTATTGTTATA
AAGTCAATGACTCAACGAGGGCTCTAATCAAAAGCTGCAAGACCGGGCAA
TTCTTTGATGCCGATCTCAAATTCTGCACTATCAGCAAACCAGCGGGATG
TGTCTAAAAGCTTTCTAGACCAT
BS17089.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:33:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14957-RA | 291 | CG14957-PA | 1..291 | 17..307 | 1455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:33:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14957-RA | 423 | CG14957-RA | 17..307 | 17..307 | 1455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:33:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3187668..3187808 | 43..183 | 705 | 100 | Plus |
3L | 28110227 | 3L | 3187863..3187990 | 180..307 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:33:34 has no hits.
BS17089.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:44:28 Download gff for
BS17089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14957-RA | 1..291 | 17..307 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:11:21 Download gff for
BS17089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14957-RA | 5..307 | 4..307 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:14 Download gff for
BS17089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14957-RA | 17..305 | 17..305 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:44:28 Download gff for
BS17089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14957-RA | 5..307 | 4..307 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:05 Download gff for
BS17089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14957-RA | 17..305 | 17..305 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:05 Download gff for
BS17089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3187579..3187605 | 17..43 | 100 | -> | Plus |
3L | 3187669..3187808 | 44..183 | 100 | -> | Plus |
3L | 3187867..3187988 | 184..305 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:14 Download gff for
BS17089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3187579..3187605 | 17..43 | 100 | -> | Plus |
arm_3L | 3187669..3187808 | 44..183 | 100 | -> | Plus |
arm_3L | 3187867..3187988 | 184..305 | 100 | | Plus |
BS17089.pep Sequence
Translation from 16 to 306
> BS17089.pep
MWTSLIVSLLLVHCLLAGAAPALKDLDAGTWSADEACQNVDKSVIIANQN
DSTCVSYVYCYKVNDSTRALIKSCKTGQFFDADLKFCTISKPAGCV*
BS17089.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:36:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14957-PA | 96 | CG14957-PA | 1..96 | 1..96 | 509 | 100 | Plus |
CG32284-PA | 102 | CG32284-PA | 1..95 | 1..95 | 254 | 50.5 | Plus |
CG42494-PC | 283 | CG42494-PC | 215..282 | 28..95 | 204 | 51.5 | Plus |
CG42494-PB | 283 | CG42494-PB | 215..282 | 28..95 | 204 | 51.5 | Plus |
CG42494-PA | 283 | CG42494-PA | 215..282 | 28..95 | 204 | 51.5 | Plus |
CG42494-PC | 283 | CG42494-PC | 123..189 | 31..96 | 160 | 40.3 | Plus |
CG42494-PB | 283 | CG42494-PB | 123..189 | 31..96 | 160 | 40.3 | Plus |