Clone BS17089 Report

Search the DGRC for BS17089

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:170
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptCG14957-RA
Protein status:BS17089.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS17089.3prime Sequence

320 bp (320 high quality bases) assembled on 2007-05-15

> BS17089.3prime
ATGGTCTAGAAAGCTTTTAACACATCCCGCTGGTTTGCTGATAGTGCAGA
ATTTGAGATCGGCATCAAAGAATTGCCCGGTCTTGCAGCTTTTGATTAGA
GCCCTCGTTGAGTCATTGACTTTATAACAATAGACGTAGCTGACGCATGT
GGAGTCATTCTGGTTCGCTATTATGACCGATTTATCCACATTCTGACACG
CCTCATCCGCACTCCAGGTGCCCGCGTCCAGATCCTTTAGCGCAGGCGCG
GCCCCGGCAAGCAGGCAGTGGACCAGGAGCAGTGATACAATTAGACTCGT
CCACATGTCGACTGATAACT

BS17089.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:01:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG14957-PA 291 CG14957-RA 1..287 306..20 1435 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:30:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG14957-RA 423 CG14957-RA 17..303 306..20 1435 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:30:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3187668..3187808 280..140 705 100 Minus
3L 28110227 3L 3187863..3187986 143..20 620 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:30:34 has no hits.

BS17089.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:01:09 Download gff for BS17089.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14957-PA 1..291 17..306 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:50:25 Download gff for BS17089.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14957-RA 5..307 17..319 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:45:16 Download gff for BS17089.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14957-RA 5..307 17..319 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:45:16 Download gff for BS17089.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3187669..3187808 140..279 100 -> Minus
3L 3187867..3187990 17..139 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:50:25 Download gff for BS17089.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3187669..3187808 140..279 100 -> Minus
arm_3L 3187867..3187990 17..139 99   Minus

BS17089.5prime Sequence

321 bp (321 high quality bases) assembled on 2007-05-15

> BS17089.5prime
GAAGTTATCAGTCGACATGTGGACGAGTCTAATTGTATCACTGCTCCTGG
TCCACTGCCTGCTTGCCGGGGCCGCGCCTGCGCTAAAGGATCTGGACGCG
GGCACCTGGAGTGCGGATGAGGCGTGTCAGAATGTGGATAAATCGGTCAT
AATAGCGAACCAGAATGACTCCACATGCGTCAGCTACGTCTATTGTTATA
AAGTCAATGACTCAACGAGGGCTCTAATCAAAAGCTGCAAGACCGGGCAA
TTCTTTGATGCCGATCTCAAATTCTGCACTATCAGCAAACCAGCGGGATG
TGTCTAAAAGCTTTCTAGACC

BS17089.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:56:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG14957-PA 291 CG14957-RA 1..291 17..307 1455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:29:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG14957-RA 423 CG14957-RA 17..307 17..307 1455 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:29:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3187668..3187808 43..183 705 100 Plus
3L 28110227 3L 3187863..3187990 180..307 640 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:29:42 has no hits.

BS17089.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:56:55 Download gff for BS17089.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14957-PA 1..291 17..307 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:42:46 Download gff for BS17089.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14957-RA 5..307 4..307 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:33:15 Download gff for BS17089.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14957-RA 5..307 4..307 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:33:15 Download gff for BS17089.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3187669..3187808 44..183 100 -> Plus
3L 3187867..3187990 184..307 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:42:46 Download gff for BS17089.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3187669..3187808 44..183 100 -> Plus
arm_3L 3187867..3187990 184..307 100   Plus

BS17089.complete Sequence

323 bp assembled on 2007-05-08

GenBank Submission: FJ638250

> BS17089.complete
GAAGTTATCAGTCGACATGTGGACGAGTCTAATTGTATCACTGCTCCTGG
TCCACTGCCTGCTTGCCGGGGCCGCGCCTGCGCTAAAGGATCTGGACGCG
GGCACCTGGAGTGCGGATGAGGCGTGTCAGAATGTGGATAAATCGGTCAT
AATAGCGAACCAGAATGACTCCACATGCGTCAGCTACGTCTATTGTTATA
AAGTCAATGACTCAACGAGGGCTCTAATCAAAAGCTGCAAGACCGGGCAA
TTCTTTGATGCCGATCTCAAATTCTGCACTATCAGCAAACCAGCGGGATG
TGTCTAAAAGCTTTCTAGACCAT

BS17089.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:33:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG14957-RA 291 CG14957-PA 1..291 17..307 1455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:33:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG14957-RA 423 CG14957-RA 17..307 17..307 1455 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:33:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3187668..3187808 43..183 705 100 Plus
3L 28110227 3L 3187863..3187990 180..307 640 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:33:34 has no hits.

BS17089.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:44:28 Download gff for BS17089.complete
Subject Subject Range Query Range Percent Splice Strand
CG14957-RA 1..291 17..307 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:11:21 Download gff for BS17089.complete
Subject Subject Range Query Range Percent Splice Strand
CG14957-RA 5..307 4..307 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:14 Download gff for BS17089.complete
Subject Subject Range Query Range Percent Splice Strand
CG14957-RA 17..305 17..305 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:44:28 Download gff for BS17089.complete
Subject Subject Range Query Range Percent Splice Strand
CG14957-RA 5..307 4..307 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:05 Download gff for BS17089.complete
Subject Subject Range Query Range Percent Splice Strand
CG14957-RA 17..305 17..305 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:05 Download gff for BS17089.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3187579..3187605 17..43 100 -> Plus
3L 3187669..3187808 44..183 100 -> Plus
3L 3187867..3187988 184..305 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:14 Download gff for BS17089.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3187579..3187605 17..43 100 -> Plus
arm_3L 3187669..3187808 44..183 100 -> Plus
arm_3L 3187867..3187988 184..305 100   Plus

BS17089.pep Sequence

Translation from 16 to 306

> BS17089.pep
MWTSLIVSLLLVHCLLAGAAPALKDLDAGTWSADEACQNVDKSVIIANQN
DSTCVSYVYCYKVNDSTRALIKSCKTGQFFDADLKFCTISKPAGCV*

BS17089.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:36:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG14957-PA 96 CG14957-PA 1..96 1..96 509 100 Plus
CG32284-PA 102 CG32284-PA 1..95 1..95 254 50.5 Plus
CG42494-PC 283 CG42494-PC 215..282 28..95 204 51.5 Plus
CG42494-PB 283 CG42494-PB 215..282 28..95 204 51.5 Plus
CG42494-PA 283 CG42494-PA 215..282 28..95 204 51.5 Plus
CG42494-PC 283 CG42494-PC 123..189 31..96 160 40.3 Plus
CG42494-PB 283 CG42494-PB 123..189 31..96 160 40.3 Plus