Clone BS17091 Report

Search the DGRC for BS17091

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:170
Well:91
Vector:pDNR-Dual
Associated Gene/TranscriptCheB42a-RA
Protein status:BS17091.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS17091.3prime Sequence

627 bp (627 high quality bases) assembled on 2007-05-15

> BS17091.3prime
ATGGTCTAGAAAGCTTTTAGACCTGTCCTGCAGTTCCACGGAACTCTATG
CAAATGGGAACTGGGCGCCTTACATTGCGCTTATCGAAGGCCTCTATTTG
GACCACCAGCTTGTAGCGCCCATCCAGATTCGGAACATTCAAGCTGGTCT
TCAAGTCCAGTTCGTAGTCTTTGTACTTTAAAACGGCCCCTGGTGTGGTC
AAGCACTTTTCCTTAATCTCGTCGGAGTTGCTAATATACTTTGTCCAGAA
ATTATACCAGTATTGGTTCTTATCAAACATGTTTTTGCAAAAGTTATTGG
AGCTGGCCGTAAACATAGTCTTCTGCCAAGTGCCCTTATCCAGGCGATAG
ACTTGACCAAATACCTTTAATGTGTCTCCAGGCTGGACATCTTTCCAGAC
CACTTTCTGCTCTCCTTCAATTCGAACTTTCGAACCAAGGTTATGTACTT
TAAGGGAGGAAGTATCCACCATCGCTTCAAAACCAGAAGGATTTCCGGGC
TGATTCTCGCATGGTGCTAACAAGCCATCTTTGTCCAATGTTAACTGGTA
CTCAGTCGCTCCAGCCAAACAGATGACCACTTGGAGCACCAGGATTGTAA
AAGTAGCCTTCATGTCGACTGATAACT

BS17091.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:58:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG33348-PA 597 CheB42a-RA 1..597 613..17 2985 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:32:24
Subject Length Description Subject Range Query Range Score Percent Strand
CheB42a-RA 693 CG33348-RA 24..620 613..17 2985 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:32:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6949505..6949754 613..364 1250 100 Minus
2R 25286936 2R 6949802..6949981 366..187 900 100 Minus
2R 25286936 2R 6950040..6950211 188..17 860 100 Minus
Blast to na_te.dros performed on 2015-02-12 16:32:23 has no hits.

BS17091.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:58:54 Download gff for BS17091.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33348-PA 1..597 17..613 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:18:54 Download gff for BS17091.3prime
Subject Subject Range Query Range Percent Splice Strand
CheB42a-RA 18..620 17..619 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:39:01 Download gff for BS17091.3prime
Subject Subject Range Query Range Percent Splice Strand
CheB42a-RA 18..620 17..619 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:39:01 Download gff for BS17091.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 6949499..6949753 365..619 98 -> Minus
2R 6949804..6949980 188..364 100 -> Minus
2R 6950041..6950211 17..187 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:18:54 Download gff for BS17091.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2837004..2837258 365..619 98 -> Minus
arm_2R 2837309..2837485 188..364 100 -> Minus
arm_2R 2837546..2837716 17..187 100   Minus

BS17091.5prime Sequence

627 bp (627 high quality bases) assembled on 2007-05-15

> BS17091.5prime
GAAGTTATCAGTCGACATGAAGGCTACTTTTACAATCCTGGTGCTCCAAG
TGGTCATCTGTTTGGCTGGAGCGACTGAGTACCAGTTAACATTGGACAAA
GATGGCTTGTTAGCACCATGCGAGAATCAGCCCGGAAATCCTTCTGGTTT
TGAAGCGATGGTGGATACTTCCTCCCTTAAAGTACATAACCTTGGTTCGA
AAGTTCGAATTGAAGGAGAGCAGAAAGTGGTCTGGAAAGATGTCCAGCCT
GGAGACACATTAAAGGTATTTGGTCAAGTCTATCGCCTGGATAAGGGCAC
TTGGCAGAAGACTATGTTTACGGCCAGCTCCAATAACTTTTGCAAAAACA
TGTTTGATAAGAACCAATACTGGTATAATTTCTGGACAAAGTATATTAGC
AACTCCGACGAGATTAAGGAAAAGTGCTTGACCACACCAGGGGCCGTTTT
AAAGTACAAAGACTACGAACTGGACTTGAAGACCAGCTTGAATGTTCCGA
ATCTGGATGGGCGCTACAAGCTGGTGGTCCAAATAGAGGCCTTCGATAAG
CGCAATGTAAGGCGCCCAGTTCCCATTTGCATAGAGTTCCGTGGAACTGC
AGGACAGGTCTAAAAGCTTTCTAGACC

BS17091.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:55:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG33348-PA 597 CheB42a-RA 1..597 17..613 2985 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:10:40
Subject Length Description Subject Range Query Range Score Percent Strand
CheB42a-RA 693 CG33348-RA 24..620 17..613 2985 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:10:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6949505..6949754 17..266 1250 100 Plus
2R 25286936 2R 6949802..6949981 264..443 900 100 Plus
2R 25286936 2R 6950040..6950211 442..613 860 100 Plus
Blast to na_te.dros performed on 2015-02-11 22:10:38 has no hits.

BS17091.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:55:06 Download gff for BS17091.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33348-PA 1..597 17..613 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:29:52 Download gff for BS17091.5prime
Subject Subject Range Query Range Percent Splice Strand
CheB42a-RA 18..620 11..613 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:51:17 Download gff for BS17091.5prime
Subject Subject Range Query Range Percent Splice Strand
CheB42a-RA 18..620 11..613 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:51:17 Download gff for BS17091.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6949499..6949753 11..265 98 -> Plus
2R 6949804..6949980 266..442 100 -> Plus
2R 6950041..6950211 443..613 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:29:52 Download gff for BS17091.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2837004..2837258 11..265 98 -> Plus
arm_2R 2837309..2837485 266..442 100 -> Plus
arm_2R 2837546..2837716 443..613 100   Plus

BS17091.complete Sequence

629 bp assembled on 2007-05-08

GenBank Submission: FJ638251

> BS17091.complete
GAAGTTATCAGTCGACATGAAGGCTACTTTTACAATCCTGGTGCTCCAAG
TGGTCATCTGTTTGGCTGGAGCGACTGAGTACCAGTTAACATTGGACAAA
GATGGCTTGTTAGCACCATGCGAGAATCAGCCCGGAAATCCTTCTGGTTT
TGAAGCGATGGTGGATACTTCCTCCCTTAAAGTACATAACCTTGGTTCGA
AAGTTCGAATTGAAGGAGAGCAGAAAGTGGTCTGGAAAGATGTCCAGCCT
GGAGACACATTAAAGGTATTTGGTCAAGTCTATCGCCTGGATAAGGGCAC
TTGGCAGAAGACTATGTTTACGGCCAGCTCCAATAACTTTTGCAAAAACA
TGTTTGATAAGAACCAATACTGGTATAATTTCTGGACAAAGTATATTAGC
AACTCCGACGAGATTAAGGAAAAGTGCTTGACCACACCAGGGGCCGTTTT
AAAGTACAAAGACTACGAACTGGACTTGAAGACCAGCTTGAATGTTCCGA
ATCTGGATGGGCGCTACAAGCTGGTGGTCCAAATAGAGGCCTTCGATAAG
CGCAATGTAAGGCGCCCAGTTCCCATTTGCATAGAGTTCCGTGGAACTGC
AGGACAGGTCTAAAAGCTTTCTAGACCAT

BS17091.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:33:39
Subject Length Description Subject Range Query Range Score Percent Strand
CheB42a-RA 597 CG33348-PA 1..597 17..613 2985 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
CheB42a-RA 693 CG33348-RA 24..620 17..613 2985 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:33:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6949505..6949754 17..266 1250 100 Plus
2R 25286936 2R 6949802..6949981 264..443 900 100 Plus
2R 25286936 2R 6950040..6950211 442..613 860 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:33:39 has no hits.

BS17091.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:51 Download gff for BS17091.complete
Subject Subject Range Query Range Percent Splice Strand
CheB42a-RA 1..597 17..613 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:52:35 Download gff for BS17091.complete
Subject Subject Range Query Range Percent Splice Strand
CheB42a-RA 18..620 11..613 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:31:51 Download gff for BS17091.complete
Subject Subject Range Query Range Percent Splice Strand
CheB42a-RA 24..618 17..611 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:51 Download gff for BS17091.complete
Subject Subject Range Query Range Percent Splice Strand
CheB42a-RA 18..620 11..613 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:17 Download gff for BS17091.complete
Subject Subject Range Query Range Percent Splice Strand
CheB42a-RA 24..618 17..611 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:17 Download gff for BS17091.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6949505..6949753 17..265 100 -> Plus
2R 6949804..6949980 266..442 100 -> Plus
2R 6950041..6950209 443..611 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:31:51 Download gff for BS17091.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2837010..2837258 17..265 100 -> Plus
arm_2R 2837309..2837485 266..442 100 -> Plus
arm_2R 2837546..2837714 443..611 100   Plus

BS17091.pep Sequence

Translation from 16 to 612

> BS17091.pep
MKATFTILVLQVVICLAGATEYQLTLDKDGLLAPCENQPGNPSGFEAMVD
TSSLKVHNLGSKVRIEGEQKVVWKDVQPGDTLKVFGQVYRLDKGTWQKTM
FTASSNNFCKNMFDKNQYWYNFWTKYISNSDEIKEKCLTTPGAVLKYKDY
ELDLKTSLNVPNLDGRYKLVVQIEAFDKRNVRRPVPICIEFRGTAGQV*

BS17091.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:18
Subject Length Description Subject Range Query Range Score Percent Strand
CheB42a-PA 198 CG33348-PA 1..198 1..198 1053 100 Plus
CheB42b-PA 196 CG33351-PA 4..190 7..193 363 35.6 Plus
CheB38b-PA 197 CG33321-PA 5..196 7..198 351 34.7 Plus
CheB42c-PB 196 CG33350-PB 3..195 6..198 333 33.5 Plus
CheB53b-PA 204 CG33524-PA 11..196 7..193 316 32.1 Plus