Clone Sequence Records
BS17091.3prime Sequence
627 bp (627 high quality bases) assembled on 2007-05-15
> BS17091.3prime
ATGGTCTAGAAAGCTTTTAGACCTGTCCTGCAGTTCCACGGAACTCTATG
CAAATGGGAACTGGGCGCCTTACATTGCGCTTATCGAAGGCCTCTATTTG
GACCACCAGCTTGTAGCGCCCATCCAGATTCGGAACATTCAAGCTGGTCT
TCAAGTCCAGTTCGTAGTCTTTGTACTTTAAAACGGCCCCTGGTGTGGTC
AAGCACTTTTCCTTAATCTCGTCGGAGTTGCTAATATACTTTGTCCAGAA
ATTATACCAGTATTGGTTCTTATCAAACATGTTTTTGCAAAAGTTATTGG
AGCTGGCCGTAAACATAGTCTTCTGCCAAGTGCCCTTATCCAGGCGATAG
ACTTGACCAAATACCTTTAATGTGTCTCCAGGCTGGACATCTTTCCAGAC
CACTTTCTGCTCTCCTTCAATTCGAACTTTCGAACCAAGGTTATGTACTT
TAAGGGAGGAAGTATCCACCATCGCTTCAAAACCAGAAGGATTTCCGGGC
TGATTCTCGCATGGTGCTAACAAGCCATCTTTGTCCAATGTTAACTGGTA
CTCAGTCGCTCCAGCCAAACAGATGACCACTTGGAGCACCAGGATTGTAA
AAGTAGCCTTCATGTCGACTGATAACT
BS17091.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:58:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33348-PA | 597 | CheB42a-RA | 1..597 | 613..17 | 2985 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:32:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CheB42a-RA | 693 | CG33348-RA | 24..620 | 613..17 | 2985 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:32:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6949505..6949754 | 613..364 | 1250 | 100 | Minus |
2R | 25286936 | 2R | 6949802..6949981 | 366..187 | 900 | 100 | Minus |
2R | 25286936 | 2R | 6950040..6950211 | 188..17 | 860 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:32:23 has no hits.
BS17091.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:58:54 Download gff for
BS17091.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33348-PA | 1..597 | 17..613 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:18:54 Download gff for
BS17091.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CheB42a-RA | 18..620 | 17..619 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:39:01 Download gff for
BS17091.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CheB42a-RA | 18..620 | 17..619 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:39:01 Download gff for
BS17091.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6949499..6949753 | 365..619 | 98 | -> | Minus |
2R | 6949804..6949980 | 188..364 | 100 | -> | Minus |
2R | 6950041..6950211 | 17..187 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:18:54 Download gff for
BS17091.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2837004..2837258 | 365..619 | 98 | -> | Minus |
arm_2R | 2837309..2837485 | 188..364 | 100 | -> | Minus |
arm_2R | 2837546..2837716 | 17..187 | 100 | | Minus |
BS17091.5prime Sequence
627 bp (627 high quality bases) assembled on 2007-05-15
> BS17091.5prime
GAAGTTATCAGTCGACATGAAGGCTACTTTTACAATCCTGGTGCTCCAAG
TGGTCATCTGTTTGGCTGGAGCGACTGAGTACCAGTTAACATTGGACAAA
GATGGCTTGTTAGCACCATGCGAGAATCAGCCCGGAAATCCTTCTGGTTT
TGAAGCGATGGTGGATACTTCCTCCCTTAAAGTACATAACCTTGGTTCGA
AAGTTCGAATTGAAGGAGAGCAGAAAGTGGTCTGGAAAGATGTCCAGCCT
GGAGACACATTAAAGGTATTTGGTCAAGTCTATCGCCTGGATAAGGGCAC
TTGGCAGAAGACTATGTTTACGGCCAGCTCCAATAACTTTTGCAAAAACA
TGTTTGATAAGAACCAATACTGGTATAATTTCTGGACAAAGTATATTAGC
AACTCCGACGAGATTAAGGAAAAGTGCTTGACCACACCAGGGGCCGTTTT
AAAGTACAAAGACTACGAACTGGACTTGAAGACCAGCTTGAATGTTCCGA
ATCTGGATGGGCGCTACAAGCTGGTGGTCCAAATAGAGGCCTTCGATAAG
CGCAATGTAAGGCGCCCAGTTCCCATTTGCATAGAGTTCCGTGGAACTGC
AGGACAGGTCTAAAAGCTTTCTAGACC
BS17091.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:55:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33348-PA | 597 | CheB42a-RA | 1..597 | 17..613 | 2985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:10:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CheB42a-RA | 693 | CG33348-RA | 24..620 | 17..613 | 2985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:10:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6949505..6949754 | 17..266 | 1250 | 100 | Plus |
2R | 25286936 | 2R | 6949802..6949981 | 264..443 | 900 | 100 | Plus |
2R | 25286936 | 2R | 6950040..6950211 | 442..613 | 860 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:10:38 has no hits.
BS17091.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:55:06 Download gff for
BS17091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33348-PA | 1..597 | 17..613 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:29:52 Download gff for
BS17091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CheB42a-RA | 18..620 | 11..613 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:51:17 Download gff for
BS17091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CheB42a-RA | 18..620 | 11..613 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:51:17 Download gff for
BS17091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6949499..6949753 | 11..265 | 98 | -> | Plus |
2R | 6949804..6949980 | 266..442 | 100 | -> | Plus |
2R | 6950041..6950211 | 443..613 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:29:52 Download gff for
BS17091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2837004..2837258 | 11..265 | 98 | -> | Plus |
arm_2R | 2837309..2837485 | 266..442 | 100 | -> | Plus |
arm_2R | 2837546..2837716 | 443..613 | 100 | | Plus |
BS17091.complete Sequence
629 bp assembled on 2007-05-08
GenBank Submission: FJ638251
> BS17091.complete
GAAGTTATCAGTCGACATGAAGGCTACTTTTACAATCCTGGTGCTCCAAG
TGGTCATCTGTTTGGCTGGAGCGACTGAGTACCAGTTAACATTGGACAAA
GATGGCTTGTTAGCACCATGCGAGAATCAGCCCGGAAATCCTTCTGGTTT
TGAAGCGATGGTGGATACTTCCTCCCTTAAAGTACATAACCTTGGTTCGA
AAGTTCGAATTGAAGGAGAGCAGAAAGTGGTCTGGAAAGATGTCCAGCCT
GGAGACACATTAAAGGTATTTGGTCAAGTCTATCGCCTGGATAAGGGCAC
TTGGCAGAAGACTATGTTTACGGCCAGCTCCAATAACTTTTGCAAAAACA
TGTTTGATAAGAACCAATACTGGTATAATTTCTGGACAAAGTATATTAGC
AACTCCGACGAGATTAAGGAAAAGTGCTTGACCACACCAGGGGCCGTTTT
AAAGTACAAAGACTACGAACTGGACTTGAAGACCAGCTTGAATGTTCCGA
ATCTGGATGGGCGCTACAAGCTGGTGGTCCAAATAGAGGCCTTCGATAAG
CGCAATGTAAGGCGCCCAGTTCCCATTTGCATAGAGTTCCGTGGAACTGC
AGGACAGGTCTAAAAGCTTTCTAGACCAT
BS17091.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:33:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CheB42a-RA | 597 | CG33348-PA | 1..597 | 17..613 | 2985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:33:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CheB42a-RA | 693 | CG33348-RA | 24..620 | 17..613 | 2985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:33:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6949505..6949754 | 17..266 | 1250 | 100 | Plus |
2R | 25286936 | 2R | 6949802..6949981 | 264..443 | 900 | 100 | Plus |
2R | 25286936 | 2R | 6950040..6950211 | 442..613 | 860 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:33:39 has no hits.
BS17091.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:51 Download gff for
BS17091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CheB42a-RA | 1..597 | 17..613 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:52:35 Download gff for
BS17091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CheB42a-RA | 18..620 | 11..613 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:31:51 Download gff for
BS17091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CheB42a-RA | 24..618 | 17..611 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:51 Download gff for
BS17091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CheB42a-RA | 18..620 | 11..613 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:17 Download gff for
BS17091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CheB42a-RA | 24..618 | 17..611 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:17 Download gff for
BS17091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6949505..6949753 | 17..265 | 100 | -> | Plus |
2R | 6949804..6949980 | 266..442 | 100 | -> | Plus |
2R | 6950041..6950209 | 443..611 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:31:51 Download gff for
BS17091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2837010..2837258 | 17..265 | 100 | -> | Plus |
arm_2R | 2837309..2837485 | 266..442 | 100 | -> | Plus |
arm_2R | 2837546..2837714 | 443..611 | 100 | | Plus |
BS17091.pep Sequence
Translation from 16 to 612
> BS17091.pep
MKATFTILVLQVVICLAGATEYQLTLDKDGLLAPCENQPGNPSGFEAMVD
TSSLKVHNLGSKVRIEGEQKVVWKDVQPGDTLKVFGQVYRLDKGTWQKTM
FTASSNNFCKNMFDKNQYWYNFWTKYISNSDEIKEKCLTTPGAVLKYKDY
ELDLKTSLNVPNLDGRYKLVVQIEAFDKRNVRRPVPICIEFRGTAGQV*
BS17091.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CheB42a-PA | 198 | CG33348-PA | 1..198 | 1..198 | 1053 | 100 | Plus |
CheB42b-PA | 196 | CG33351-PA | 4..190 | 7..193 | 363 | 35.6 | Plus |
CheB38b-PA | 197 | CG33321-PA | 5..196 | 7..198 | 351 | 34.7 | Plus |
CheB42c-PB | 196 | CG33350-PB | 3..195 | 6..198 | 333 | 33.5 | Plus |
CheB53b-PA | 204 | CG33524-PA | 11..196 | 7..193 | 316 | 32.1 | Plus |