Clone Sequence Records
BS17093.3prime Sequence
315 bp (315 high quality bases) assembled on 2007-05-15
> BS17093.3prime
ATGGTCTAGAAAGCTTTTAACTCCTTAGCATTGCTTTCGCTGTGTGGCGT
CTCCCTTTCTTGCCGCCGCTCGGCTGCGTCTCGTCCCAGTAGCCGCAGGC
CAGCGTGAACAGCCCGTCCTCAATGGCCAGGAAACCGTGCATCCAGCCGG
CGGTCAGCGTGTTATCCACCGCCAGTCGCACCTCGTCAACAGTCTTGGCC
TCCATTTCGGCCACATACGAAGCCACCTCGTCCAGGTTGAGTGGACGATG
GAATACGTTGAAGGCCTCCAAAATGTGGTCAGCGTACAGGTAACGCGCCA
TGTCGACTGATAACT
BS17093.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:59:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15579-PA | 285 | CG15579-RA | 1..285 | 301..17 | 1425 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:05:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15579-RB | 521 | CG15579-RB | 97..381 | 301..17 | 1425 | 100 | Minus |
CG15579-RA | 436 | CG15579-RA | 97..381 | 301..17 | 1425 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:05:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4311419..4311703 | 17..301 | 1425 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 06:05:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader4 | 3105 | invader4 INVADER4 3105bp | 1105..1164 | 62..1 | 107 | 66.1 | Minus |
BS17093.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:59:12 Download gff for
BS17093.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15579-PA | 1..285 | 17..301 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:48:56 Download gff for
BS17093.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15579-RA | 97..384 | 14..301 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:03:21 Download gff for
BS17093.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15579-RA | 97..384 | 14..301 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:03:21 Download gff for
BS17093.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4311416..4311703 | 14..301 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:48:56 Download gff for
BS17093.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4205449..4205736 | 14..301 | 99 | | Plus |
BS17093.5prime Sequence
315 bp (315 high quality bases) assembled on 2007-05-15
> BS17093.5prime
GAAGTTATCAGTCGACATGGCGCGTTACCTGTACGCTGACCACATTTTGG
AGGCCTTCAACGTATTCCATCGTCCACTCAACCTGGACGAGGTGGCTTCG
TATGTGGCCGAAATGGAGGCCAAGACTGTTGACGAGGTGCGACTGGCGGT
GGATAACACGCTGACCGCCGGCTGGATGCACGGTTTCCTGGCCATTGAGG
ACGGGCTGTTCACGCTGGCCTGCGGCTACTGGGACGAGACGCAGCCGAGC
GGCGGCAAGAAAGGGAGACGCCACACAGCGAAAGCAATGCTAAGGAGTTA
AAAGCTTTCTAGACC
BS17093.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:55:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15579-PA | 285 | CG15579-RA | 1..285 | 17..301 | 1425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:37:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15579-RB | 521 | CG15579-RB | 97..381 | 17..301 | 1425 | 100 | Plus |
CG15579-RA | 436 | CG15579-RA | 97..381 | 17..301 | 1425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:37:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4311419..4311703 | 301..17 | 1425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:37:39 has no hits.
BS17093.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:55:18 Download gff for
BS17093.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15579-PA | 1..285 | 17..301 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:50:38 Download gff for
BS17093.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15579-RA | 97..384 | 17..304 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:14:11 Download gff for
BS17093.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15579-RA | 97..384 | 17..304 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:14:11 Download gff for
BS17093.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4311416..4311703 | 17..304 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:50:38 Download gff for
BS17093.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4205449..4205736 | 17..304 | 99 | | Minus |
BS17093.complete Sequence
317 bp assembled on 2007-05-08
GenBank Submission: FJ638252
> BS17093.complete
GAAGTTATCAGTCGACATGGCGCGTTACCTGTACGCTGACCACATTTTGG
AGGCCTTCAACGTATTCCATCGTCCACTCAACCTGGACGAGGTGGCTTCG
TATGTGGCCGAAATGGAGGCCAAGACTGTTGACGAGGTGCGACTGGCGGT
GGATAACACGCTGACCGCCGGCTGGATGCACGGTTTCCTGGCCATTGAGG
ACGGGCTGTTCACGCTGGCCTGCGGCTACTGGGACGAGACGCAGCCGAGC
GGCGGCAAGAAAGGGAGACGCCACACAGCGAAAGCAATGCTAAGGAGTTA
AAAGCTTTCTAGACCAT
BS17093.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:08:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15579-RB | 285 | CG15579-PB | 1..285 | 17..301 | 1425 | 100 | Plus |
CG15579-RA | 285 | CG15579-PA | 1..285 | 17..301 | 1425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15579-RB | 521 | CG15579-RB | 97..381 | 17..301 | 1425 | 100 | Plus |
CG15579-RA | 436 | CG15579-RA | 97..381 | 17..301 | 1425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4311419..4311703 | 301..17 | 1425 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 08:08:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader4 | 3105 | invader4 INVADER4 3105bp | 1105..1164 | 256..317 | 107 | 66.1 | Plus |
BS17093.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:20 Download gff for
BS17093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15579-RA | 1..285 | 17..301 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:01 Download gff for
BS17093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15579-RA | 97..384 | 17..304 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:55:46 Download gff for
BS17093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15579-RA | 97..379 | 17..299 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:20 Download gff for
BS17093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15579-RA | 1..285 | 17..301 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:11:50 Download gff for
BS17093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15579-RA | 97..379 | 17..299 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:11:50 Download gff for
BS17093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4311421..4311703 | 17..299 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:55:46 Download gff for
BS17093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4205454..4205736 | 17..299 | 100 | | Minus |
BS17093.pep Sequence
Translation from 16 to 300
> BS17093.pep
MARYLYADHILEAFNVFHRPLNLDEVASYVAEMEAKTVDEVRLAVDNTLT
AGWMHGFLAIEDGLFTLACGYWDETQPSGGKKGRRHTAKAMLRS*
BS17093.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:40:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15579-PB | 94 | CG15579-PB | 1..94 | 1..94 | 497 | 100 | Plus |
CG15579-PA | 94 | CG15579-PA | 1..94 | 1..94 | 497 | 100 | Plus |