Clone Sequence Records
BS17094.3prime Sequence
877 bp (802 high quality bases) assembled on 2007-05-15
> BS17094.3prime
ATGGTCTAGAAAGCTTTTATATGTCCTTCAAGTGCAAAAACTTTCCCTCA
TCACTGCTCAAGCCACAAGGTCGCCTGAATTCCTGGGCACCCACATGGAA
CCACTCATTGCAAATCCACTTTGATCCTTGAAGAACGGGGCAACCAGCAT
GCTTCGTGCGAAAGTCCTTGTGGGTGGAACTGTGCAGATTGTACCAGATT
AAAAGACTTCCCTTCACCGGCGGAACAGCCAATCGGAGGAAGGGAAAGGC
TGTGGCTCCTCCCAGAGCAACATCATTTAGGTAGAAAAGAGCTGTCAACA
GGCGGTTGCCCTTCCAGCTGAAAACACTTTGACCATCGTCCTCCACGAAG
TCAAAGTGCGGCTCATACTGTCCCCCAATTCCGTAGTTGACCAGCTGCAG
GGGCTCCGCACTTTCCGTGCTCAGTCCGGTGACATCCTCCAATCGCTGTT
TAATCTTGGAAAGCCATGGATTCGCATCGTACCATAGCCAGGTGTTGCGA
CTTATCCGGACCTCACTTGTGGTAGAGTTCTCACTTTGACCCACCTTTGA
ACGCTCCATATTACCCTTGCCGTGCTCCATGATCGTATCTATCTCGCTGT
CCCACAGAACTTCGTGAACGTAGGCGACATAAGGGTCGACATTCAATTGC
TCGATTTTGAAAGGGGAAAGACGATAGTAGGGAACTCCCTGGTGGTAGAG
CCAGCACCTCAAATTCCGCTGCTCCCGCGGAGATTGATGGAGTTCTCCTC
GACAAACTTGCGTATATAGCTTGTAGCTCTCCTTTTGTTCTTTTTCTGCT
ATCTGAGGCAGTTCCACTTGCTTTCTGGGAGCAAAACTTCGCTCCCTAGC
CAATTGGCCTTCGTACAATATCTTGTT
BS17094.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:01:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31014-PA | 1623 | PH4alphaSG1-RA | 763..1623 | 877..17 | 4305 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:37:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PH4alphaSG1-RA | 1708 | CG31014-RA | 794..1656 | 877..15 | 4315 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:37:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30504213..30504663 | 340..790 | 2255 | 100 | Plus |
| 3R | 32079331 | 3R | 30503871..30504036 | 115..280 | 830 | 100 | Plus |
| 3R | 32079331 | 3R | 30503717..30503816 | 15..114 | 500 | 100 | Plus |
| 3R | 32079331 | 3R | 30504720..30504807 | 790..877 | 440 | 100 | Plus |
| 3R | 32079331 | 3R | 30504091..30504156 | 277..342 | 315 | 98.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:37:19 has no hits.
BS17094.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:01:04 Download gff for
BS17094.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31014-PA | 763..1623 | 17..877 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:19:26 Download gff for
BS17094.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaSG1-RA | 794..1656 | 15..877 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:50:43 Download gff for
BS17094.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaSG1-RA | 794..1656 | 15..877 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:50:43 Download gff for
BS17094.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30503871..30504036 | 115..280 | 100 | <- | Plus |
| 3R | 30504095..30504154 | 281..340 | 100 | <- | Plus |
| 3R | 30504721..30504807 | 791..877 | 100 | | Plus |
| 3R | 30503717..30503816 | 15..114 | 100 | <- | Plus |
| 3R | 30504214..30504663 | 341..790 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:19:26 Download gff for
BS17094.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26329439..26329538 | 15..114 | 100 | <- | Plus |
| arm_3R | 26329593..26329758 | 115..280 | 100 | <- | Plus |
| arm_3R | 26329817..26329876 | 281..340 | 100 | <- | Plus |
| arm_3R | 26329936..26330385 | 341..790 | 100 | <- | Plus |
| arm_3R | 26330443..26330529 | 791..877 | 100 | | Plus |
BS17094.5prime Sequence
864 bp (764 high quality bases) assembled on 2007-05-15
> BS17094.5prime
GAAGTTATCAGTCGACATGTTCCGGCTAAGTATTATTTTATCGTTGCTCT
GCGTATTCCCAGTCAATGGAGATTACTACTCGGCTATAAGTGAGCTGGAA
AGACTACTCGACGTGGAGGCTTTTATAGTAGAAAAGTTCGATGAATATCT
TGAAAGGGCTCAGCAAGAACAGGAGAACTTAAAAAGATTTTTAGATCAGA
TAGACGAGCAGCAAAATGATCGTGGCGATCTCGAGGAATACTTTGGAAAT
CCAATCAATGCCTTCATCACCATTAAACGCCTCGTTCATGACTGGAAGTT
CAATGTATTTGATCCTGTGTTTGACTCCAGTAATTTTGAGACCTACAAGA
ACAACTTAAGTGATTCGCTCGAGAAGATCAACTTCAAAGGACCCACCCAA
GAGGATCTACATGGAGCCACCCGCGCTCTTCTTCGGCTGCAGAATATGTA
CCAACTAAACACGGACCACCTAGCTTCTGGCGTTCTCCATCCTGGCGAGA
AAAACGCACTGGGCACCTCGTTGAGTGCAAGTGACTGTTTTGAGTTAGGC
AAGAATCTCTGCGAGATTAAGGAGTACTCTTACGGTTCCGAGTGGCTATT
GGAGGCCAGAAAACGATTGCACGGGAAACCATTAGGTTTTATATCACCCA
ATGTGAGCGATGTCGAGATACTGGAGCACCTTTCATCCGCCTTCAATGGT
TTGGGAAATCTAAAATTAGCTTATAAATTAAATAATGAAATATTGGATAA
GAAGCCTGATCATGAGGAGGCTCTCAAGAACAAGATATTGTACGAAGGGC
AATTGGCTAGGGAGCGAAGTTTTGCTCCCAGAAAGCAAGTGGAACTGCCT
CAGATAGCAGAAAA
BS17094.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:56:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31014-PA | 1623 | PH4alphaSG1-RA | 1..848 | 17..864 | 4215 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:09:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PH4alphaSG1-RA | 1708 | CG31014-RA | 24..879 | 9..864 | 4235 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:09:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30504722..30505402 | 864..184 | 3390 | 99.9 | Minus |
| 3R | 32079331 | 3R | 30505461..30505638 | 186..9 | 860 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:09:42 has no hits.
BS17094.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:56:51 Download gff for
BS17094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31014-PA | 1..844 | 17..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:18:57 Download gff for
BS17094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaSG1-RA | 24..875 | 9..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:26:11 Download gff for
BS17094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaSG1-RA | 24..875 | 9..860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:26:11 Download gff for
BS17094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30504726..30505399 | 187..860 | 99 | <- | Minus |
| 3R | 30505461..30505638 | 9..186 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:18:57 Download gff for
BS17094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26330448..26331121 | 187..860 | 99 | <- | Minus |
| arm_3R | 26331183..26331360 | 9..186 | 98 | | Minus |
BS17094.complete Sequence
1655 bp assembled on 2007-05-08
GenBank Submission: FJ638253
> BS17094.complete
GAAGTTATCAGTCGACATGTTCCGGCTAAGTATTATTTTATCGTTGCTCT
GCGTATTCCCAGTCAATGGAGATTACTACTCGGCTATAAGTGAGCTGGAA
AGACTACTCGACGTGGAGGCTTTTATAGTAGAAAAGTTCGATGAATATCT
TGAAAGGGCTCAGCAAGAACAGGAGAACTTAAAAAGATTTTTAGATCAGA
TAGACGAGCAGCAAAATGATCGTGGCGATCTCGAGGAATACTTTGGAAAT
CCAATCAATGCCTTCATCACCATTAAACGCCTCGTTCATGACTGGAAGTT
CAATGTATTTGATCCTGTGTTTGACTCCAGTAATTTTGAGACCTACAAGA
ACAACTTAAGTGATTCGCTCGAGAAGATCAACTTCAAAGGACCCACCCAA
GAGGATCTACATGGAGCCACCCGCGCTCTTCTTCGGCTGCAGAATATGTA
CCAACTAAACACGGACCACCTAGCTTCTGGCGTTCTCCATCCTGGCGAGA
AAAACGCACTGGGCACCTCGTTGAGTGCAAGTGACTGTTTTGAGTTAGGC
AAGAATCTCTGCGAGATTAAGGAGTACTCTTACGGTTCCGAGTGGCTATT
GGAGGCCAGAAAACGATTGCACGGGAAACCATTAGGTTTTATATCACCCA
ATGTGAGCGATGTCGAGATACTGGAGCACCTTTCATCCGCCTTCAATGGT
TTGGGAAATCTAAAATTAGCTTATAAATTAAATAATGAAATATTGGATAA
GAAGCCTGATCATGAGGAGGCTCTCAAGAACAAGATATTGTACGAAGGCC
AATTGGCTAGGGAGCGAAGTTTTGCTCCCAGAAAGCAAGTGGAACTGCCT
CAGATAGCAGAAAAAGAACAAAAGGAGAGCTACAAGCTATATACGCAAGT
TTGTCGAGGAGAACTCCATCAATCTCCGCGGGAGCAGCGGAATTTGAGGT
GCTGGCTCTACCACCAGGGAGTTCCCTACTATCGTCTTTCCCCTTTCAAA
ATCGAGCAATTGAATGTCGACCCTTATGTCGCCTACGTTCACGAAGTTCT
GTGGGACAGCGAGATAGATACGATCATGGAGCACGGCAAGGGTAATATGG
AGCGTTCAAAGGTGGGTCAAAGTGAGAACTCTACCACAAGTGAGGTCCGG
ATAAGTCGCAACACCTGGCTATGGTACGATGCGAATCCATGGCTTTCCAA
GATTAAACAGCGATTGGAGGATGTCACCGGACTGAGCACGGAAAGTGCGG
AGCCCCTGCAGCTGGTCAACTACGGAATTGGGGGACAGTATGAGCCGCAC
TTTGACTTCGTGGAGGACGATGGTCAAAGTGTTTTCAGCTGGAAGGGCAA
CCGCCTGTTGACAGCTCTTTTCTACCTAAATGATGTTGCTCTGGGAGGAG
CCACAGCCTTTCCCTTCCTCCGATTGGCTGTTCCGCCGGTGAAGGGAAGT
CTTTTAATCTGGTACAATCTGCACAGTTCCACCCACAAGGACTTTCGCAC
GAAGCATGCTGGTTGCCCCGTTCTTCAAGGATCAAAGTGGATTTGCAATG
AGTGGTTCCATGTGGGTGCCCAGGAATTCAGGCGACCTTGTGGCTTGAGC
AGTGATGAGGGAAAGTTTTTGCACTTGAAGGACATATAAAAGCTTTCTAG
ACCAT
BS17094.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:22:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PH4alphaSG1-RA | 1623 | CG31014-PA | 1..1623 | 17..1639 | 8115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:22:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PH4alphaSG1-RA | 1708 | CG31014-RA | 24..1656 | 9..1641 | 8135 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:22:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30504720..30505402 | 866..184 | 3415 | 100 | Minus |
| 3R | 32079331 | 3R | 30504213..30504663 | 1316..866 | 2255 | 100 | Minus |
| 3R | 32079331 | 3R | 30505461..30505638 | 186..9 | 860 | 98.9 | Minus |
| 3R | 32079331 | 3R | 30503871..30504036 | 1541..1376 | 830 | 100 | Minus |
| 3R | 32079331 | 3R | 30503717..30503816 | 1641..1542 | 500 | 100 | Minus |
| 3R | 32079331 | 3R | 30504091..30504156 | 1379..1314 | 315 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:22:38 has no hits.
BS17094.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:44 Download gff for
BS17094.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaSG1-RA | 1..1623 | 17..1639 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:00:41 Download gff for
BS17094.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaSG1-RA | 12..1644 | 9..1641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:05 Download gff for
BS17094.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaSG1-RA | 37..1652 | 22..1637 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:44 Download gff for
BS17094.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaSG1-RA | 12..1644 | 9..1641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:14 Download gff for
BS17094.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaSG1-RA | 37..1652 | 22..1637 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:14 Download gff for
BS17094.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30503871..30504036 | 1376..1541 | 100 | <- | Minus |
| 3R | 30504095..30504154 | 1316..1375 | 100 | <- | Minus |
| 3R | 30503721..30503816 | 1542..1637 | 100 | <- | Minus |
| 3R | 30504214..30504663 | 866..1315 | 100 | <- | Minus |
| 3R | 30504721..30505399 | 187..865 | 100 | <- | Minus |
| 3R | 30505461..30505625 | 22..186 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:05 Download gff for
BS17094.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26329817..26329876 | 1316..1375 | 100 | <- | Minus |
| arm_3R | 26329443..26329538 | 1542..1637 | 100 | <- | Minus |
| arm_3R | 26329593..26329758 | 1376..1541 | 100 | <- | Minus |
| arm_3R | 26329936..26330385 | 866..1315 | 100 | <- | Minus |
| arm_3R | 26330443..26331121 | 187..865 | 100 | <- | Minus |
| arm_3R | 26331183..26331347 | 22..186 | 100 | | Minus |
BS17094.pep Sequence
Translation from 16 to 1638
> BS17094.pep
MFRLSIILSLLCVFPVNGDYYSAISELERLLDVEAFIVEKFDEYLERAQQ
EQENLKRFLDQIDEQQNDRGDLEEYFGNPINAFITIKRLVHDWKFNVFDP
VFDSSNFETYKNNLSDSLEKINFKGPTQEDLHGATRALLRLQNMYQLNTD
HLASGVLHPGEKNALGTSLSASDCFELGKNLCEIKEYSYGSEWLLEARKR
LHGKPLGFISPNVSDVEILEHLSSAFNGLGNLKLAYKLNNEILDKKPDHE
EALKNKILYEGQLARERSFAPRKQVELPQIAEKEQKESYKLYTQVCRGEL
HQSPREQRNLRCWLYHQGVPYYRLSPFKIEQLNVDPYVAYVHEVLWDSEI
DTIMEHGKGNMERSKVGQSENSTTSEVRISRNTWLWYDANPWLSKIKQRL
EDVTGLSTESAEPLQLVNYGIGGQYEPHFDFVEDDGQSVFSWKGNRLLTA
LFYLNDVALGGATAFPFLRLAVPPVKGSLLIWYNLHSSTHKDFRTKHAGC
PVLQGSKWICNEWFHVGAQEFRRPCGLSSDEGKFLHLKDI*
BS17094.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PH4alphaSG1-PA | 540 | CG31014-PA | 1..540 | 1..540 | 2874 | 100 | Plus |
| PH4alphaEFB-PA | 550 | CG31022-PA | 5..548 | 2..534 | 924 | 36.8 | Plus |
| PH4alphaMP-PA | 535 | CG9726-PA | 7..533 | 6..539 | 821 | 35.6 | Plus |
| PH4alphaNE1-PA | 537 | CG9728-PA | 10..526 | 7..530 | 802 | 35.4 | Plus |
| PH4alphaSG2-PA | 527 | CG1546-PA | 9..527 | 4..539 | 795 | 35.4 | Plus |
