Clone BS17153 Report

Search the DGRC for BS17153

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:171
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptRpb7-RA
Protein status:BS17153.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS17153.3prime Sequence

552 bp (552 high quality bases) assembled on 2007-05-15

> BS17153.3prime
ATGGTCTAGAAAGCTTTTACTTGGACACCAATCCCAAGTAGTCGTCCATC
AAAGTGCCAATTGCAAAAATTCCAGTGGCATCTACTCGTGTGCCCACAAT
CTTCAGCCGAATCTTATCCTCTCCGGAGATAACCACATCCTCATCTTTAC
TCTTATAGCAGGGCGGATTCCCATTCGGGCAGAACTGCATGTCGGCGGGA
ATAGAATGATGCGAAATGAAGCAGGACAGCGGGCCGATCTCTGCAAACAT
GCCCACTTTGTTGATCTGCTTGACCACTGCGTCCAGAACTTCGCCCTTAA
ATGGCCGAAAGACGATAGCTTTGTACTTGACCGGATACACCACAAATCCC
TGGCCCGGCTGGATGACACCCGATCCGATTTGATCTATCGTCGTCACCGC
TATCACGAATCCGTACTTTCCCGTGCAGGTGCCCTCCACTTCGGAGTAGA
GTTTCTGCTTCACGGTCTCCAGCAGTTGCGGGCCAAAGTAACGTGGATGA
AGCAGAATCTCTTGCTCCAGCGATATGTGGTAAAACATGTCGACTGATAA
CT

BS17153.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:08:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG31155-PA 522 Rpb7-RA 1..518 538..21 2590 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
Rpb7-RA 759 CG31155-RA 89..611 538..16 2600 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:37:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15222703..15223023 206..526 1605 100 Plus
3R 32079331 3R 15222508..15222645 68..205 690 100 Plus
3R 32079331 3R 15222399..15222450 16..67 245 98.1 Plus
Blast to na_te.dros performed on 2015-02-12 05:37:05 has no hits.

BS17153.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:08:23 Download gff for BS17153.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31155-PA 1..522 17..538 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:44:46 Download gff for BS17153.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpb7-RA 89..611 16..538 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:41:36 Download gff for BS17153.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpb7-RA 89..611 16..538 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:41:36 Download gff for BS17153.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15222703..15223023 206..526 100 <- Plus
3R 15222399..15222450 16..67 98 <- Plus
3R 15222508..15222645 68..205 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:44:46 Download gff for BS17153.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11048121..11048172 16..67 98 <- Plus
arm_3R 11048230..11048367 68..205 100 <- Plus
arm_3R 11048425..11048745 206..526 100 <- Plus

BS17153.5prime Sequence

552 bp (552 high quality bases) assembled on 2007-05-15

> BS17153.5prime
GAAGTTATCAGTCGACATGTTTTACCACATATCGCTGGAGCAAGAGATTC
TGCTTCATCCACGTTACTTTGGCCCGCAACTGCTGGAGACCGTGAAGCAG
AAACTCTACTCCGAAGTGGAGGGCACCTGCACGGGAAAGTACGGATTCGT
GATAGCGGTGACGACGATAGATCAAATCGGATCGGGTGTCATCCAGCCGG
GCCAGGGATTTGTGGTGTATCCGGTCAAGTACAAAGCTATCGTCTTTCGG
CCATTTAAGGGCGAAGTTCTGGACGCAGTGGTCAAGCAGATCAACAAAGT
GGGCATGTTTGCAGAGATCGGCCCGCTGTCCTGCTTCATTTCGCATCATT
CTATTCCCGCCGACATGCAGTTCTGCCCGAATGGGAATCCGCCCTGCTAT
AAGAGTAAAGATGAGGATGTGGTTATCTCCGGAGAGGATAAGATTCGGCT
GAAGATTGTGGGCACACGAGTAGATGCCACTGGAATTTTTGCAATTGGCA
CTTTGATGGACGACTACTTGGGATTGGTGTCCAACTAAAAGCTTTCTAGA
CC

BS17153.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:04:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG31155-PA 522 Rpb7-RA 1..522 17..538 2610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
Rpb7-RA 759 CG31155-RA 89..611 17..539 2615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:00:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15222703..15223023 349..29 1605 100 Minus
3R 32079331 3R 15222508..15222645 487..350 690 100 Minus
3R 32079331 3R 15222399..15222450 539..488 260 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:00:15 has no hits.

BS17153.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:04:10 Download gff for BS17153.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31155-PA 1..522 17..538 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:52:34 Download gff for BS17153.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpb7-RA 89..611 17..539 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:38:28 Download gff for BS17153.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpb7-RA 89..611 17..539 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:38:28 Download gff for BS17153.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15222399..15222450 488..539 100 <- Minus
3R 15222508..15222645 350..487 100 <- Minus
3R 15222703..15223023 29..349 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:52:34 Download gff for BS17153.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11048121..11048172 488..539 100 <- Minus
arm_3R 11048230..11048367 350..487 100 <- Minus
arm_3R 11048425..11048745 29..349 100 <- Minus

BS17153.complete Sequence

554 bp assembled on 2007-05-08

GenBank Submission: FJ638881

> BS17153.complete
GAAGTTATCAGTCGACATGTTTTACCACATATCGCTGGAGCAAGAGATTC
TGCTTCATCCACGTTACTTTGGCCCGCAACTGCTGGAGACCGTGAAGCAG
AAACTCTACTCCGAAGTGGAGGGCACCTGCACGGGAAAGTACGGATTCGT
GATAGCGGTGACGACGATAGATCAAATCGGATCGGGTGTCATCCAGCCGG
GCCAGGGATTTGTGGTGTATCCGGTCAAGTACAAAGCTATCGTCTTTCGG
CCATTTAAGGGCGAAGTTCTGGACGCAGTGGTCAAGCAGATCAACAAAGT
GGGCATGTTTGCAGAGATCGGCCCGCTGTCCTGCTTCATTTCGCATCATT
CTATTCCCGCCGACATGCAGTTCTGCCCGAATGGGAATCCGCCCTGCTAT
AAGAGTAAAGATGAGGATGTGGTTATCTCCGGAGAGGATAAGATTCGGCT
GAAGATTGTGGGCACACGAGTAGATGCCACTGGAATTTTTGCAATTGGCA
CTTTGATGGACGACTACTTGGGATTGGTGTCCAACTAAAAGCTTTCTAGA
CCAT

BS17153.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:17:04
Subject Length Description Subject Range Query Range Score Percent Strand
Rpb7-RA 522 CG31155-PA 1..522 17..538 2610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:17:05
Subject Length Description Subject Range Query Range Score Percent Strand
Rpb7-RA 759 CG31155-RA 89..611 17..539 2615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:17:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15222703..15223023 349..29 1605 100 Minus
3R 32079331 3R 15222508..15222645 487..350 690 100 Minus
3R 32079331 3R 15222399..15222450 539..488 260 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:17:03 has no hits.

BS17153.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:48 Download gff for BS17153.complete
Subject Subject Range Query Range Percent Splice Strand
Rpb7-RA 1..522 17..538 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:00:45 Download gff for BS17153.complete
Subject Subject Range Query Range Percent Splice Strand
Rpb7-RA 36..558 17..539 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:49:09 Download gff for BS17153.complete
Subject Subject Range Query Range Percent Splice Strand
Rpb7-RA 96..608 24..536 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:49 Download gff for BS17153.complete
Subject Subject Range Query Range Percent Splice Strand
Rpb7-RA 36..558 17..539 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:40 Download gff for BS17153.complete
Subject Subject Range Query Range Percent Splice Strand
Rpb7-RA 96..608 24..536 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:40 Download gff for BS17153.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15222402..15222450 488..536 100 <- Minus
3R 15222508..15222645 350..487 100 <- Minus
3R 15222703..15223025 24..349 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:49:09 Download gff for BS17153.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11048124..11048172 488..536 100 <- Minus
arm_3R 11048230..11048367 350..487 100 <- Minus
arm_3R 11048425..11048747 24..349 98   Minus

BS17153.pep Sequence

Translation from 16 to 537

> BS17153.pep
MFYHISLEQEILLHPRYFGPQLLETVKQKLYSEVEGTCTGKYGFVIAVTT
IDQIGSGVIQPGQGFVVYPVKYKAIVFRPFKGEVLDAVVKQINKVGMFAE
IGPLSCFISHHSIPADMQFCPNGNPPCYKSKDEDVVISGEDKIRLKIVGT
RVDATGIFAIGTLMDDYLGLVSN*

BS17153.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:13
Subject Length Description Subject Range Query Range Score Percent Strand
Rpb7-PA 173 CG31155-PA 1..173 1..173 907 100 Plus