Clone Sequence Records
BS17153.3prime Sequence
552 bp (552 high quality bases) assembled on 2007-05-15
> BS17153.3prime
ATGGTCTAGAAAGCTTTTACTTGGACACCAATCCCAAGTAGTCGTCCATC
AAAGTGCCAATTGCAAAAATTCCAGTGGCATCTACTCGTGTGCCCACAAT
CTTCAGCCGAATCTTATCCTCTCCGGAGATAACCACATCCTCATCTTTAC
TCTTATAGCAGGGCGGATTCCCATTCGGGCAGAACTGCATGTCGGCGGGA
ATAGAATGATGCGAAATGAAGCAGGACAGCGGGCCGATCTCTGCAAACAT
GCCCACTTTGTTGATCTGCTTGACCACTGCGTCCAGAACTTCGCCCTTAA
ATGGCCGAAAGACGATAGCTTTGTACTTGACCGGATACACCACAAATCCC
TGGCCCGGCTGGATGACACCCGATCCGATTTGATCTATCGTCGTCACCGC
TATCACGAATCCGTACTTTCCCGTGCAGGTGCCCTCCACTTCGGAGTAGA
GTTTCTGCTTCACGGTCTCCAGCAGTTGCGGGCCAAAGTAACGTGGATGA
AGCAGAATCTCTTGCTCCAGCGATATGTGGTAAAACATGTCGACTGATAA
CT
BS17153.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:08:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31155-PA | 522 | Rpb7-RA | 1..518 | 538..21 | 2590 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:37:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpb7-RA | 759 | CG31155-RA | 89..611 | 538..16 | 2600 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:37:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15222703..15223023 | 206..526 | 1605 | 100 | Plus |
3R | 32079331 | 3R | 15222508..15222645 | 68..205 | 690 | 100 | Plus |
3R | 32079331 | 3R | 15222399..15222450 | 16..67 | 245 | 98.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:37:05 has no hits.
BS17153.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:08:23 Download gff for
BS17153.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31155-PA | 1..522 | 17..538 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:44:46 Download gff for
BS17153.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpb7-RA | 89..611 | 16..538 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:41:36 Download gff for
BS17153.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpb7-RA | 89..611 | 16..538 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:41:36 Download gff for
BS17153.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15222703..15223023 | 206..526 | 100 | <- | Plus |
3R | 15222399..15222450 | 16..67 | 98 | <- | Plus |
3R | 15222508..15222645 | 68..205 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:44:46 Download gff for
BS17153.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11048121..11048172 | 16..67 | 98 | <- | Plus |
arm_3R | 11048230..11048367 | 68..205 | 100 | <- | Plus |
arm_3R | 11048425..11048745 | 206..526 | 100 | <- | Plus |
BS17153.5prime Sequence
552 bp (552 high quality bases) assembled on 2007-05-15
> BS17153.5prime
GAAGTTATCAGTCGACATGTTTTACCACATATCGCTGGAGCAAGAGATTC
TGCTTCATCCACGTTACTTTGGCCCGCAACTGCTGGAGACCGTGAAGCAG
AAACTCTACTCCGAAGTGGAGGGCACCTGCACGGGAAAGTACGGATTCGT
GATAGCGGTGACGACGATAGATCAAATCGGATCGGGTGTCATCCAGCCGG
GCCAGGGATTTGTGGTGTATCCGGTCAAGTACAAAGCTATCGTCTTTCGG
CCATTTAAGGGCGAAGTTCTGGACGCAGTGGTCAAGCAGATCAACAAAGT
GGGCATGTTTGCAGAGATCGGCCCGCTGTCCTGCTTCATTTCGCATCATT
CTATTCCCGCCGACATGCAGTTCTGCCCGAATGGGAATCCGCCCTGCTAT
AAGAGTAAAGATGAGGATGTGGTTATCTCCGGAGAGGATAAGATTCGGCT
GAAGATTGTGGGCACACGAGTAGATGCCACTGGAATTTTTGCAATTGGCA
CTTTGATGGACGACTACTTGGGATTGGTGTCCAACTAAAAGCTTTCTAGA
CC
BS17153.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:04:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31155-PA | 522 | Rpb7-RA | 1..522 | 17..538 | 2610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:00:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpb7-RA | 759 | CG31155-RA | 89..611 | 17..539 | 2615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:00:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15222703..15223023 | 349..29 | 1605 | 100 | Minus |
3R | 32079331 | 3R | 15222508..15222645 | 487..350 | 690 | 100 | Minus |
3R | 32079331 | 3R | 15222399..15222450 | 539..488 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:00:15 has no hits.
BS17153.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:04:10 Download gff for
BS17153.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31155-PA | 1..522 | 17..538 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:52:34 Download gff for
BS17153.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpb7-RA | 89..611 | 17..539 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:38:28 Download gff for
BS17153.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpb7-RA | 89..611 | 17..539 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:38:28 Download gff for
BS17153.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15222399..15222450 | 488..539 | 100 | <- | Minus |
3R | 15222508..15222645 | 350..487 | 100 | <- | Minus |
3R | 15222703..15223023 | 29..349 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:52:34 Download gff for
BS17153.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11048121..11048172 | 488..539 | 100 | <- | Minus |
arm_3R | 11048230..11048367 | 350..487 | 100 | <- | Minus |
arm_3R | 11048425..11048745 | 29..349 | 100 | <- | Minus |
BS17153.complete Sequence
554 bp assembled on 2007-05-08
GenBank Submission: FJ638881
> BS17153.complete
GAAGTTATCAGTCGACATGTTTTACCACATATCGCTGGAGCAAGAGATTC
TGCTTCATCCACGTTACTTTGGCCCGCAACTGCTGGAGACCGTGAAGCAG
AAACTCTACTCCGAAGTGGAGGGCACCTGCACGGGAAAGTACGGATTCGT
GATAGCGGTGACGACGATAGATCAAATCGGATCGGGTGTCATCCAGCCGG
GCCAGGGATTTGTGGTGTATCCGGTCAAGTACAAAGCTATCGTCTTTCGG
CCATTTAAGGGCGAAGTTCTGGACGCAGTGGTCAAGCAGATCAACAAAGT
GGGCATGTTTGCAGAGATCGGCCCGCTGTCCTGCTTCATTTCGCATCATT
CTATTCCCGCCGACATGCAGTTCTGCCCGAATGGGAATCCGCCCTGCTAT
AAGAGTAAAGATGAGGATGTGGTTATCTCCGGAGAGGATAAGATTCGGCT
GAAGATTGTGGGCACACGAGTAGATGCCACTGGAATTTTTGCAATTGGCA
CTTTGATGGACGACTACTTGGGATTGGTGTCCAACTAAAAGCTTTCTAGA
CCAT
BS17153.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:17:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpb7-RA | 522 | CG31155-PA | 1..522 | 17..538 | 2610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:17:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpb7-RA | 759 | CG31155-RA | 89..611 | 17..539 | 2615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:17:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15222703..15223023 | 349..29 | 1605 | 100 | Minus |
3R | 32079331 | 3R | 15222508..15222645 | 487..350 | 690 | 100 | Minus |
3R | 32079331 | 3R | 15222399..15222450 | 539..488 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:17:03 has no hits.
BS17153.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:48 Download gff for
BS17153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpb7-RA | 1..522 | 17..538 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:00:45 Download gff for
BS17153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpb7-RA | 36..558 | 17..539 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:49:09 Download gff for
BS17153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpb7-RA | 96..608 | 24..536 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:49 Download gff for
BS17153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpb7-RA | 36..558 | 17..539 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:40 Download gff for
BS17153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpb7-RA | 96..608 | 24..536 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:40 Download gff for
BS17153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15222402..15222450 | 488..536 | 100 | <- | Minus |
3R | 15222508..15222645 | 350..487 | 100 | <- | Minus |
3R | 15222703..15223025 | 24..349 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:49:09 Download gff for
BS17153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11048124..11048172 | 488..536 | 100 | <- | Minus |
arm_3R | 11048230..11048367 | 350..487 | 100 | <- | Minus |
arm_3R | 11048425..11048747 | 24..349 | 98 | | Minus |
BS17153.pep Sequence
Translation from 16 to 537
> BS17153.pep
MFYHISLEQEILLHPRYFGPQLLETVKQKLYSEVEGTCTGKYGFVIAVTT
IDQIGSGVIQPGQGFVVYPVKYKAIVFRPFKGEVLDAVVKQINKVGMFAE
IGPLSCFISHHSIPADMQFCPNGNPPCYKSKDEDVVISGEDKIRLKIVGT
RVDATGIFAIGTLMDDYLGLVSN*
BS17153.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpb7-PA | 173 | CG31155-PA | 1..173 | 1..173 | 907 | 100 | Plus |