Clone BS17154 Report

Search the DGRC for BS17154

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:171
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptTotX-RA
Protein status:BS17154.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS17154.5prime Sequence

459 bp (459 high quality bases) assembled on 2007-05-15

> BS17154.5prime
GAAGTTATCAGTCGACATGGGGCTTTCTATTGGCAGCTTGCTAATATGCG
TGTTCTTAGGCATAGTTCCTTTTGCAACTGCTAACACAAACAGTTCAAGT
TATGAGGAACACAGGAATTATTTGCTTAACATCTTTCACAATCCATTTGT
GAATGACTCCATTAAGGAGAAAAATATTCCGCAGCTAATCGCTTTTTATC
AACGATATCCTACAGATGTTCCTCTATCCGACGCAGACAGGCAACAATTT
GAAAGGTTTATTCATGATTACAGAGAATACCGGGCAGTTTTGGTTGATGG
TGCACCACCTCAAGGAGGATCATTTGGAAACATATTTGGACACTTCCTAG
GCAGAGTCGGAACCCGGTATATTTCGTCTCTGTTTAATAAGAAAAGGGAG
GAAAGGAAATCCAACCATGCATACATAATCGAGGACTATAACTAAAAGCT
TTCTAGACC

BS17154.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG31193-PA 429 TotX-RA 1..429 17..445 2145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:28:11
Subject Length Description Subject Range Query Range Score Percent Strand
TotX-RA 602 CG31193-RA 31..460 17..446 2150 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:28:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20905059..20905488 446..17 2150 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:28:09 has no hits.

BS17154.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:04:19 Download gff for BS17154.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31193-PA 1..429 17..445 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:31:49 Download gff for BS17154.5prime
Subject Subject Range Query Range Percent Splice Strand
TotX-RA 23..463 10..451 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:13:19 Download gff for BS17154.5prime
Subject Subject Range Query Range Percent Splice Strand
TotX-RA 23..463 10..451 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:13:19 Download gff for BS17154.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20905056..20905492 10..451 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:31:49 Download gff for BS17154.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16730778..16731214 10..451 98   Minus

BS17154.3prime Sequence

459 bp (459 high quality bases) assembled on 2007-05-15

> BS17154.3prime
ATGGTCTAGAAAGCTTTTAGTTATAGTCCTCGATTATGTATGCATGGTTG
GATTTCCTTTCCTCCCTTTTCTTATTAAACAGAGACGAAATATACCGGGT
TCCGACTCTGCCTAGGAAGTGTCCAAATATGTTTCCAAATGATCCTCCTT
GAGGTGGTGCACCATCAACCAAAACTGCCCGGTATTCTCTGTAATCATGA
ATAAACCTTTCAAATTGTTGCCTGTCTGCGTCGGATAGAGGAACATCTGT
AGGATATCGTTGATAAAAAGCGATTAGCTGCGGAATATTTTTCTCCTTAA
TGGAGTCATTCACAAATGGATTGTGAAAGATGTTAAGCAAATAATTCCTG
TGTTCCTCATAACTTGAACTGTTTGTGTTAGCAGTTGCAAAAGGAACTAT
GCCTAAGAACACGCATATTAGCAAGCTGCCAATAGAAAGCCCCATGTCGA
CTGATAACT

BS17154.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:08:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG31193-PA 429 TotX-RA 1..429 445..17 2145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:03:51
Subject Length Description Subject Range Query Range Score Percent Strand
TotX-RA 602 CG31193-RA 31..460 445..16 2150 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:03:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20905059..20905488 16..445 2150 100 Plus
Blast to na_te.dros performed on 2015-02-04 21:03:49 has no hits.

BS17154.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:08:32 Download gff for BS17154.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31193-PA 1..429 17..445 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:38:38 Download gff for BS17154.3prime
Subject Subject Range Query Range Percent Splice Strand
TotX-RA 23..463 11..452 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:38:47 Download gff for BS17154.3prime
Subject Subject Range Query Range Percent Splice Strand
TotX-RA 23..463 11..452 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:38:47 Download gff for BS17154.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20905056..20905492 11..452 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:38:38 Download gff for BS17154.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16730778..16731214 11..452 98   Plus

BS17154.complete Sequence

461 bp assembled on 2007-05-08

GenBank Submission: FJ638258

> BS17154.complete
GAAGTTATCAGTCGACATGGGGCTTTCTATTGGCAGCTTGCTAATATGCG
TGTTCTTAGGCATAGTTCCTTTTGCAACTGCTAACACAAACAGTTCAAGT
TATGAGGAACACAGGAATTATTTGCTTAACATCTTTCACAATCCATTTGT
GAATGACTCCATTAAGGAGAAAAATATTCCGCAGCTAATCGCTTTTTATC
AACGATATCCTACAGATGTTCCTCTATCCGACGCAGACAGGCAACAATTT
GAAAGGTTTATTCATGATTACAGAGAATACCGGGCAGTTTTGGTTGATGG
TGCACCACCTCAAGGAGGATCATTTGGAAACATATTTGGACACTTCCTAG
GCAGAGTCGGAACCCGGTATATTTCGTCTCTGTTTAATAAGAAAAGGGAG
GAAAGGAAATCCAACCATGCATACATAATCGAGGACTATAACTAAAAGCT
TTCTAGACCAT

BS17154.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:58:00
Subject Length Description Subject Range Query Range Score Percent Strand
TotX-RA 429 CG31193-PA 1..429 17..445 2145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:58:01
Subject Length Description Subject Range Query Range Score Percent Strand
TotX-RA 602 CG31193-RA 31..460 17..446 2150 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:57:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20905059..20905488 446..17 2150 100 Minus
Blast to na_te.dros performed on 2014-11-26 14:57:59 has no hits.

BS17154.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:50 Download gff for BS17154.complete
Subject Subject Range Query Range Percent Splice Strand
TotX-RA 1..429 17..445 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:00:47 Download gff for BS17154.complete
Subject Subject Range Query Range Percent Splice Strand
TotX-RA 23..463 10..451 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:46:16 Download gff for BS17154.complete
Subject Subject Range Query Range Percent Splice Strand
TotX-RA 31..457 17..443 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:50 Download gff for BS17154.complete
Subject Subject Range Query Range Percent Splice Strand
TotX-RA 23..463 10..451 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:03:43 Download gff for BS17154.complete
Subject Subject Range Query Range Percent Splice Strand
TotX-RA 31..457 17..443 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:03:43 Download gff for BS17154.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20905062..20905488 17..443 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:46:16 Download gff for BS17154.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16730784..16731210 17..443 100   Minus

BS17154.pep Sequence

Translation from 16 to 444

> BS17154.pep
MGLSIGSLLICVFLGIVPFATANTNSSSYEEHRNYLLNIFHNPFVNDSIK
EKNIPQLIAFYQRYPTDVPLSDADRQQFERFIHDYREYRAVLVDGAPPQG
GSFGNIFGHFLGRVGTRYISSLFNKKREERKSNHAYIIEDYN*

BS17154.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:12
Subject Length Description Subject Range Query Range Score Percent Strand
TotX-PA 142 CG31193-PA 1..142 1..142 752 100 Plus