Clone Sequence Records
BS17154.5prime Sequence
459 bp (459 high quality bases) assembled on 2007-05-15
> BS17154.5prime
GAAGTTATCAGTCGACATGGGGCTTTCTATTGGCAGCTTGCTAATATGCG
TGTTCTTAGGCATAGTTCCTTTTGCAACTGCTAACACAAACAGTTCAAGT
TATGAGGAACACAGGAATTATTTGCTTAACATCTTTCACAATCCATTTGT
GAATGACTCCATTAAGGAGAAAAATATTCCGCAGCTAATCGCTTTTTATC
AACGATATCCTACAGATGTTCCTCTATCCGACGCAGACAGGCAACAATTT
GAAAGGTTTATTCATGATTACAGAGAATACCGGGCAGTTTTGGTTGATGG
TGCACCACCTCAAGGAGGATCATTTGGAAACATATTTGGACACTTCCTAG
GCAGAGTCGGAACCCGGTATATTTCGTCTCTGTTTAATAAGAAAAGGGAG
GAAAGGAAATCCAACCATGCATACATAATCGAGGACTATAACTAAAAGCT
TTCTAGACC
BS17154.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:04:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31193-PA | 429 | TotX-RA | 1..429 | 17..445 | 2145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:28:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TotX-RA | 602 | CG31193-RA | 31..460 | 17..446 | 2150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:28:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20905059..20905488 | 446..17 | 2150 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:28:09 has no hits.
BS17154.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:04:19 Download gff for
BS17154.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31193-PA | 1..429 | 17..445 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:31:49 Download gff for
BS17154.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotX-RA | 23..463 | 10..451 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:13:19 Download gff for
BS17154.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotX-RA | 23..463 | 10..451 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:13:19 Download gff for
BS17154.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20905056..20905492 | 10..451 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:31:49 Download gff for
BS17154.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16730778..16731214 | 10..451 | 98 | | Minus |
BS17154.3prime Sequence
459 bp (459 high quality bases) assembled on 2007-05-15
> BS17154.3prime
ATGGTCTAGAAAGCTTTTAGTTATAGTCCTCGATTATGTATGCATGGTTG
GATTTCCTTTCCTCCCTTTTCTTATTAAACAGAGACGAAATATACCGGGT
TCCGACTCTGCCTAGGAAGTGTCCAAATATGTTTCCAAATGATCCTCCTT
GAGGTGGTGCACCATCAACCAAAACTGCCCGGTATTCTCTGTAATCATGA
ATAAACCTTTCAAATTGTTGCCTGTCTGCGTCGGATAGAGGAACATCTGT
AGGATATCGTTGATAAAAAGCGATTAGCTGCGGAATATTTTTCTCCTTAA
TGGAGTCATTCACAAATGGATTGTGAAAGATGTTAAGCAAATAATTCCTG
TGTTCCTCATAACTTGAACTGTTTGTGTTAGCAGTTGCAAAAGGAACTAT
GCCTAAGAACACGCATATTAGCAAGCTGCCAATAGAAAGCCCCATGTCGA
CTGATAACT
BS17154.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:08:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31193-PA | 429 | TotX-RA | 1..429 | 445..17 | 2145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:03:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TotX-RA | 602 | CG31193-RA | 31..460 | 445..16 | 2150 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:03:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20905059..20905488 | 16..445 | 2150 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 21:03:49 has no hits.
BS17154.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:08:32 Download gff for
BS17154.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31193-PA | 1..429 | 17..445 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:38:38 Download gff for
BS17154.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotX-RA | 23..463 | 11..452 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:38:47 Download gff for
BS17154.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotX-RA | 23..463 | 11..452 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:38:47 Download gff for
BS17154.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20905056..20905492 | 11..452 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:38:38 Download gff for
BS17154.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16730778..16731214 | 11..452 | 98 | | Plus |
BS17154.complete Sequence
461 bp assembled on 2007-05-08
GenBank Submission: FJ638258
> BS17154.complete
GAAGTTATCAGTCGACATGGGGCTTTCTATTGGCAGCTTGCTAATATGCG
TGTTCTTAGGCATAGTTCCTTTTGCAACTGCTAACACAAACAGTTCAAGT
TATGAGGAACACAGGAATTATTTGCTTAACATCTTTCACAATCCATTTGT
GAATGACTCCATTAAGGAGAAAAATATTCCGCAGCTAATCGCTTTTTATC
AACGATATCCTACAGATGTTCCTCTATCCGACGCAGACAGGCAACAATTT
GAAAGGTTTATTCATGATTACAGAGAATACCGGGCAGTTTTGGTTGATGG
TGCACCACCTCAAGGAGGATCATTTGGAAACATATTTGGACACTTCCTAG
GCAGAGTCGGAACCCGGTATATTTCGTCTCTGTTTAATAAGAAAAGGGAG
GAAAGGAAATCCAACCATGCATACATAATCGAGGACTATAACTAAAAGCT
TTCTAGACCAT
BS17154.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:58:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TotX-RA | 429 | CG31193-PA | 1..429 | 17..445 | 2145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:58:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TotX-RA | 602 | CG31193-RA | 31..460 | 17..446 | 2150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:57:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20905059..20905488 | 446..17 | 2150 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:57:59 has no hits.
BS17154.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:50 Download gff for
BS17154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotX-RA | 1..429 | 17..445 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:00:47 Download gff for
BS17154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotX-RA | 23..463 | 10..451 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:46:16 Download gff for
BS17154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotX-RA | 31..457 | 17..443 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:50 Download gff for
BS17154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotX-RA | 23..463 | 10..451 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:03:43 Download gff for
BS17154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotX-RA | 31..457 | 17..443 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:03:43 Download gff for
BS17154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20905062..20905488 | 17..443 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:46:16 Download gff for
BS17154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16730784..16731210 | 17..443 | 100 | | Minus |
BS17154.pep Sequence
Translation from 16 to 444
> BS17154.pep
MGLSIGSLLICVFLGIVPFATANTNSSSYEEHRNYLLNIFHNPFVNDSIK
EKNIPQLIAFYQRYPTDVPLSDADRQQFERFIHDYREYRAVLVDGAPPQG
GSFGNIFGHFLGRVGTRYISSLFNKKREERKSNHAYIIEDYN*
BS17154.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TotX-PA | 142 | CG31193-PA | 1..142 | 1..142 | 752 | 100 | Plus |