Clone Sequence Records
BS17157.3prime Sequence
768 bp (768 high quality bases) assembled on 2007-05-15
> BS17157.3prime
ATGGTCTAGAAAGCTTCTACTGCTCTTCGTTGTCCTCCACTAGCTTATTC
CCATTTACTCGCTCCCAGCATTTGTACTCATGGTACATCCACGAGCACTT
GCTTAGCGCCACCTCCCGCTGAGTCCCACTTAGTCGACAGCCACTGTAGT
CAGCGCCAGAAGACTGATCCTCATTTCCGGAAGGCCCAAACGCCTGCTTC
CAGTTTTCCAGCCGCCAGTTTCCATCGGGATCGTAGAATCCCATGGCATC
CGCAAAGCACTGAAAGAGGCAGGGAATAGGTTCCTTTGACTTCAGCTTAC
TGTACTGCAGCAGCTCCACGTTGGTGGCGTTCAGCTGGCGGGAACACTGT
AGCAGTGTGCTCAGGCTGGTGCCCGCATGCATCTCGGCCTGCTTCAGGCA
CCTGAGTCCCCGATAGGCGAAGCTGCAGCCATCGGACCCCATCCGGCGCA
GCTCGAATCTGCAGTAGTTATAGACATCGGCGCCCAGGTCCTCAGTCAGT
TGCTTGAGCCTCCACTTGTTTTCCTCCACGTCGAACCAGCCCTTTTCTCT
GGCCAAGCAGCGCATCAGGCAAGGTACCTCCTCCCGCGTCCAAGATGAAT
ACCGTTCCAGCTTTCGAAGATCGCCAGCAATGCTCTCCGGCGAACTAAGT
TGCCGCAGGCACTTTTCCAGAGTCTGGGCATCACCAGAAAGGTCAGCTAG
TGCCTGACTGCAGATCAGGAACAGGCTGACTAGAACCGCACGAGGGGAAC
TCATGTCGACTGATAACT
BS17157.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:06:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31557-PA | 738 | Obp83ef-RA | 1..738 | 754..17 | 3690 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:27:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp83ef-RA | 901 | CG31557-RA | 27..764 | 754..17 | 3690 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:27:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6109779..6110468 | 17..706 | 3450 | 100 | Plus |
| 3R | 32079331 | 3R | 6110957..6111008 | 703..754 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:27:31 has no hits.
BS17157.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:06:26 Download gff for
BS17157.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31557-PA | 1..738 | 17..754 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:22:40 Download gff for
BS17157.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp83ef-RA | 20..768 | 11..762 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:20:49 Download gff for
BS17157.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp83ef-RA | 20..768 | 11..762 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:20:49 Download gff for
BS17157.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6109775..6110465 | 11..703 | 99 | <- | Plus |
| 3R | 6110958..6111015 | 704..762 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:22:40 Download gff for
BS17157.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1935497..1936187 | 11..703 | 99 | <- | Plus |
| arm_3R | 1936680..1936737 | 704..762 | 94 | | Plus |
BS17157.5prime Sequence
768 bp (768 high quality bases) assembled on 2007-05-15
> BS17157.5prime
GAAGTTATCAGTCGACATGAGTTCCCCTCGTGCGGTTCTAGTCAGCCTGT
TCCTGATCTGCAGTCAGGCACTAGCTGACCTTTCTGGTGATGCCCAGACT
CTGGAAAAGTGCCTGCGGCAACTTAGTTCGCCGGAGAGCATTGCTGGCGA
TCTTCGAAAGCTGGAACGGTATTCATCTTGGACGCGGGAGGAGGTACCTT
GCCTGATGCGCTGCTTGGCCAGAGAAAAGGGCTGGTTCGACGTGGAGGAA
AACAAGTGGAGGCTCAAGCAACTGACTGAGGACCTGGGCGCCGATGTCTA
TAACTACTGCAGATTCGAGCTGCGCCGGATGGGGTCCGATGGCTGCAGCT
TCGCCTATCGGGGACTCAGGTGCCTGAAGCAGGCCGAGATGCATGCGGGC
ACCAGCCTGAGCACACTGCTACAGTGTTCCCGCCAGCTGAACGCCACCAA
CGTGGAGCTGCTGCAGTACAGTAAGCTGAAGTCAAAGGAACCTATTCCCT
GCCTCTTTCAGTGCTTTGCGGATGCCATGGGATTCTACGATCCCGATGGA
AACTGGCGGCTGGAAAACTGGAAGCAGGCGTTTGGGCCTTCCGGAAATGA
GGATCAGTCTTCTGGCGCTGACTACAGTGGCTGTCGACTAAGTGGGACTC
AGCGGGAGGTGGCGCTAAGCAAGTGCTCGTGGATGTACCATGAGTACAAA
TGCTGGGAGCGAGTAAATGGGAATAAGCTAGTGGAGGACAACGAAGAGCA
GTAGAAGCTTTCTAGACC
BS17157.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:02:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31557-PA | 738 | Obp83ef-RA | 1..738 | 17..754 | 3690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:56:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp83ef-RA | 901 | CG31557-RA | 27..764 | 17..754 | 3690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:56:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6109779..6110468 | 754..65 | 3450 | 100 | Minus |
| 3R | 32079331 | 3R | 6110957..6111008 | 68..17 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:56:35 has no hits.
BS17157.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:02:14 Download gff for
BS17157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31557-PA | 1..738 | 17..754 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:24:42 Download gff for
BS17157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp83ef-RA | 20..768 | 9..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:21:49 Download gff for
BS17157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp83ef-RA | 20..768 | 9..760 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:21:49 Download gff for
BS17157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6109775..6110465 | 68..760 | 99 | <- | Minus |
| 3R | 6110958..6111015 | 9..67 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:24:42 Download gff for
BS17157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1935497..1936187 | 68..760 | 99 | <- | Minus |
| arm_3R | 1936680..1936737 | 9..67 | 94 | | Minus |
BS17157.complete Sequence
770 bp assembled on 2007-05-08
GenBank Submission: FJ638259
> BS17157.complete
GAAGTTATCAGTCGACATGAGTTCCCCTCGTGCGGTTCTAGTCAGCCTGT
TCCTGATCTGCAGTCAGGCACTAGCTGACCTTTCTGGTGATGCCCAGACT
CTGGAAAAGTGCCTGCGGCAACTTAGTTCGCCGGAGAGCATTGCTGGCGA
TCTTCGAAAGCTGGAACGGTATTCATCTTGGACGCGGGAGGAGGTACCTT
GCCTGATGCGCTGCTTGGCCAGAGAAAAGGGCTGGTTCGACGTGGAGGAA
AACAAGTGGAGGCTCAAGCAACTGACTGAGGACCTGGGCGCCGATGTCTA
TAACTACTGCAGATTCGAGCTGCGCCGGATGGGGTCCGATGGCTGCAGCT
TCGCCTATCGGGGACTCAGGTGCCTGAAGCAGGCCGAGATGCATGCGGGC
ACCAGCCTGAGCACACTGCTACAGTGTTCCCGCCAGCTGAACGCCACCAA
CGTGGAGCTGCTGCAGTACAGTAAGCTGAAGTCAAAGGAACCTATTCCCT
GCCTCTTTCAGTGCTTTGCGGATGCCATGGGATTCTACGATCCCGATGGA
AACTGGCGGCTGGAAAACTGGAAGCAGGCGTTTGGGCCTTCCGGAAATGA
GGATCAGTCTTCTGGCGCTGACTACAGTGGCTGTCGACTAAGTGGGACTC
AGCGGGAGGTGGCGCTAAGCAAGTGCTCGTGGATGTACCATGAGTACAAA
TGCTGGGAGCGAGTAAATGGGAATAAGCTAGTGGAGGACAACGAAGAGCA
GTAGAAGCTTTCTAGACCAT
BS17157.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:59:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp83ef-RA | 738 | CG31557-PA | 1..738 | 17..754 | 3690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:59:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp83ef-RA | 901 | CG31557-RA | 27..764 | 17..754 | 3690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:59:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6109779..6110468 | 754..65 | 3450 | 100 | Minus |
| 3R | 32079331 | 3R | 6110957..6111008 | 68..17 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:59:29 has no hits.
BS17157.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:51 Download gff for
BS17157.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp83ef-RA | 1..738 | 17..754 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:00:48 Download gff for
BS17157.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp83ef-RA | 4..752 | 9..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:37 Download gff for
BS17157.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp83ef-RA | 27..764 | 17..754 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:51 Download gff for
BS17157.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp83ef-RA | 4..752 | 9..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:00:05 Download gff for
BS17157.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp83ef-RA | 27..764 | 17..754 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:00:05 Download gff for
BS17157.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6110958..6111008 | 17..67 | 100 | | Minus |
| 3R | 6109779..6110465 | 68..754 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:37 Download gff for
BS17157.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1935501..1936187 | 68..754 | 100 | <- | Minus |
| arm_3R | 1936680..1936730 | 17..67 | 100 | | Minus |
BS17157.pep Sequence
Translation from 16 to 753
> BS17157.pep
MSSPRAVLVSLFLICSQALADLSGDAQTLEKCLRQLSSPESIAGDLRKLE
RYSSWTREEVPCLMRCLAREKGWFDVEENKWRLKQLTEDLGADVYNYCRF
ELRRMGSDGCSFAYRGLRCLKQAEMHAGTSLSTLLQCSRQLNATNVELLQ
YSKLKSKEPIPCLFQCFADAMGFYDPDGNWRLENWKQAFGPSGNEDQSSG
ADYSGCRLSGTQREVALSKCSWMYHEYKCWERVNGNKLVEDNEEQ*
BS17157.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp83ef-PA | 245 | CG31557-PA | 1..245 | 1..245 | 1322 | 100 | Plus |
| Obp83cd-PA | 242 | CG15582-PA | 3..238 | 1..230 | 200 | 24.2 | Plus |
