Clone Sequence Records
BS17160.complete Sequence
231 bp assembled on 2010-02-09
GenBank Submission: KX806547
> BS17160.complete
GAAGTTATCAGTCGACATGGCAGTGGCATTCTACATACCCGATCAGGCGA
CTCTGTTGCGGGAGGCGGAGCAGAAGGAGCAGCAGATCCTTCGCTTGCGG
GAGTCACAGTGGAGATTCCTGGCCACCGTCGTCCTGGAAACCCTGCGCCA
GTACACTTCATGTCATCCGAAGACCGGAAGAAAGTCCGGCAAATATCGCA
AGCCATCGCAATGAAAAGCTTTCTAGACCAT
BS17160.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:31:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rpr-RA | 198 | CG4319-PA | 1..198 | 17..214 | 990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:31:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rpr-RA | 901 | CG4319-RA | 201..398 | 17..214 | 990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:31:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18398038..18398235 | 214..17 | 990 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:31:49 has no hits.
BS17160.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:02 Download gff for
BS17160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rpr-RA | 169..365 | 17..213 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:13 Download gff for
BS17160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rpr-RA | 201..397 | 17..213 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:24:37 Download gff for
BS17160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rpr-RA | 169..365 | 17..213 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:31:01 Download gff for
BS17160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rpr-RA | 201..397 | 17..213 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:31:01 Download gff for
BS17160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18398039..18398235 | 17..213 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:13 Download gff for
BS17160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18391139..18391335 | 17..213 | 100 | | Minus |
BS17160.3prime Sequence
229 bp (229 high quality bases) assembled on 2007-05-15
> BS17160.3prime
ATGGTCTAGAAAGCTTTTCATTGCGATGGCTTGCGATATTTGCCGGACTT
TCTTCCGGTCTTCGGATGACATGAAGTGTACTGGCGCAGGGTTTCCAGGA
CGACGGTGGCCAGGAATCTCCACTGTGACTCCCGCAAGCGAAGGATCTGC
TGCTCCTTCTGCTCCGCCTCCCGCAACAGAGTCGCCTGATCGGGTATGTA
GAATGCCACTGCCATGTCGACTGATAACT
BS17160.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:08:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4319-PA | 198 | rpr-RA | 1..198 | 215..18 | 990 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:37:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rpr-RA | 901 | CG4319-RA | 201..398 | 215..18 | 990 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:37:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18398038..18398235 | 18..215 | 990 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:37:21 has no hits.
BS17160.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:08:36 Download gff for
BS17160.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4319-PA | 1..198 | 18..215 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:44:49 Download gff for
BS17160.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rpr-RA | 196..403 | 11..223 | 96 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:42:33 Download gff for
BS17160.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rpr-RA | 196..403 | 11..223 | 96 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:42:33 Download gff for
BS17160.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18398033..18398240 | 11..223 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:44:49 Download gff for
BS17160.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18391133..18391340 | 11..223 | 96 | | Plus |
BS17160.5prime Sequence
229 bp (229 high quality bases) assembled on 2007-05-15
> BS17160.5prime
GAAGTTATCAGTCGACATGGCAGTGGCATTCTACATACCCGATCAGGCGA
CTCTGTTGCGGGAGGCGGAGCAGAAGGAGCAGCAGATCCTTCGCTTGCGG
GAGTCACAGTGGAGATTCCTGGCCACCGTCGTCCTGGAAACCCTGCGCCA
GTACACTTCATGTCATCCGAAGACCGGAAGAAAGTCCGGCAAATATCGCA
AGCCATCGCAATGAAAAGCTTTCTAGACC
BS17160.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:04:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4319-PA | 198 | rpr-RA | 1..198 | 17..214 | 990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:35:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rpr-RA | 901 | CG4319-RA | 201..398 | 17..214 | 990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:35:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18398038..18398235 | 214..17 | 990 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:35:04 has no hits.
BS17160.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:04:23 Download gff for
BS17160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4319-PA | 1..198 | 17..214 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:44:14 Download gff for
BS17160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rpr-RA | 196..403 | 9..221 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:36:43 Download gff for
BS17160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rpr-RA | 196..403 | 9..221 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:36:43 Download gff for
BS17160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18398033..18398240 | 9..221 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:44:14 Download gff for
BS17160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18391133..18391340 | 9..221 | 96 | | Minus |
BS17160.pep Sequence
Translation from 159 to 231
> BS17160.pep
MSSEDRKKVRQISQAIAMKSFLDH
Sequence BS17160.pep has no blast hits.
