Clone BS17164 Report

Search the DGRC for BS17164

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:171
Well:64
Vector:pDNR-Dual
Associated Gene/Transcriptwbl-RA
Protein status:BS17164.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS17164.3prime Sequence

804 bp (759 high quality bases) assembled on 2007-05-15

> BS17164.3prime
ATGGTCTAGAAAGCTTTCACAGTTCCTCCTTTTCCGGCGCTGTCTTGGTG
ACCTTGTGAACCCTGAAGACTTCCAGGATGTTCAGTTTCCTCAGCAGCTC
CTCCTTCTTGGCCTCGGTGACCTTGCCGGCCTTGAGGCGCAGGAGTCGCT
TGGTCTCCTCCTCCAGGAAATCGTAGCCCACCTCGTGGATCTTCCGCATG
TAGATCAGATAGGCCCTGGCGTTCTGCTGCTGCTCGGGATCGGTCAGCTG
CTCCTGCTTGGCCTGCAGCTTTTCGATAAGCTTCAGTTGCTCTGCATCGG
GGATATTGGCATAGTTCTTGAGCACTTCGTTGAACTCTTTGATGCAGCCA
TCACGACCGATGTACAGAGGTGTGTTGGCACTGACAAAAGCCTTCAGATT
GTCCAGCGTTACGTCGACGTGGCTAGGAAGCTGGACGTACTCATCAGCGT
TGCCCTTGAACAGGAAGATACTCGGGAAGTTCTTGTCGTCGACTTTGTAA
CGGTCGCCCAGGGCCTTGTTCTCCAGTTCTCCATAGTCCTTGACACCCAC
GGTGGCTATTAGCAGATCTTTAGTTGCCTTGTGGGCAGATTTGGAGAAGG
CGGTAAAGGCCTCATGCTTTTCCCCATACGGATATGCGATATCAAATTTC
ACTACGGAGTAGGGAAATCGTTCCACCGTCTTCTCGAAACTCAGCTCATC
CAGATCCACGCAGCCCGTGCAGGTGACGGCCCAGGTGGTGGGTATCGAGT
GGATAGCGACCAGGAGCAGAGTCACCAAAATATGCATCATGTCGACTGAT
AACT

BS17164.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:08:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG7225-PA 774 wbl-RA 1..774 790..17 3870 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:21:52
Subject Length Description Subject Range Query Range Score Percent Strand
wbl-RB 1319 CG7225-RB 431..1205 790..16 3875 100 Minus
wbl-RA 953 CG7225-RA 65..839 790..16 3875 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:21:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19250303..19250803 516..16 2505 100 Minus
2R 25286936 2R 19249825..19250101 790..514 1385 100 Minus
Blast to na_te.dros performed 2015-02-11 04:21:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2754..2867 322..210 151 65.8 Minus

BS17164.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:08:41 Download gff for BS17164.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7225-PA 1..774 17..790 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:30:12 Download gff for BS17164.3prime
Subject Subject Range Query Range Percent Splice Strand
wbl-RA 58..848 5..798 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:03:27 Download gff for BS17164.3prime
Subject Subject Range Query Range Percent Splice Strand
wbl-RA 58..848 5..798 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:03:27 Download gff for BS17164.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 19249818..19250100 515..798 98 -> Minus
2R 19250305..19250812 5..514 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:30:12 Download gff for BS17164.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15137323..15137605 515..798 98 -> Minus
arm_2R 15137810..15138317 5..514 99   Minus

BS17164.5prime Sequence

804 bp (770 high quality bases) assembled on 2007-05-15

> BS17164.5prime
GAAGTTATCAGTCGACATGATGCATATTTTGGTGACTCTGCTCCTGGTCG
CTATCCACTCGATACCCACCACCTGGGCCGTCACCTGCACGGGCTGCGTG
GATCTGGATGAGCTGAGTTTCGAGAAGACGGTGGAACGATTTCCCTACTC
CGTAGTGAAATTTGATATCGCATATCCGTATGGGGAAAAGCATGAGGCCT
TTACCGCCTTCTCCAAATCTGCCCACAAGGCAACTAAAGATCTGCTAATA
GCCACCGTGGGTGTCAAGGACTATGGAGAACTGGAGAACAAGGCCCTGGG
CGACCGTTACAAAGTCGACGACAAGAACTTCCCGAGTATCTTCCTGTTCA
AGGGCAACGCTGATGAGTACGTCCAGCTTCCTAGCCACGTCGACGTAACG
CTGGACAATCTGAAGGCTTTTGTCAGTGCCAACACACCTCTGTACATCGG
TCGTGATGGCTGCATCAAAGAGTTCAACGAAGTGCTCAAGAACTATGCCA
ATATCCCCGATGCAGAGCAACTGAAGCTTATCGAAAAGCTGCAGGCCAAG
CAGGAGCAGCTGACCGATCCCGAGCAGCAGCAGAACGCCAGGGCCTATCT
GATCTACATGCGGAAGATCCACGAGGTGGGCTACGATTTCCTGGAGGAGG
AGACCAAGCGACTCCTGCGCCTCAAGGCCGGCAAGGTCACCGAGGCCAAG
AAGGAGGAGCTGCTGAGGAAACTGAACATCCTGGAAGTCTTCAGGGTTCA
CAAGGTCACCAAGACAGCGCCGGAAAAGGAGGAACTGTGAAAGCTTTCTA
GACC

BS17164.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:04:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG7225-PA 774 wbl-RA 1..774 17..790 3870 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:17:33
Subject Length Description Subject Range Query Range Score Percent Strand
wbl-RB 1319 CG7225-RB 431..1205 17..791 3875 100 Plus
wbl-RA 953 CG7225-RA 65..839 17..791 3875 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:17:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19250303..19250803 291..791 2505 100 Plus
2R 25286936 2R 19249825..19250101 17..293 1385 100 Plus
Blast to na_te.dros performed 2015-02-13 15:17:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2754..2867 485..597 151 65.8 Plus

BS17164.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:04:28 Download gff for BS17164.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7225-PA 1..774 17..790 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:51:22 Download gff for BS17164.5prime
Subject Subject Range Query Range Percent Splice Strand
wbl-RA 58..848 9..802 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:08:44 Download gff for BS17164.5prime
Subject Subject Range Query Range Percent Splice Strand
wbl-RA 58..848 9..802 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:08:44 Download gff for BS17164.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 19249818..19250100 9..292 98 -> Plus
2R 19250305..19250812 293..802 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:51:22 Download gff for BS17164.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15137323..15137605 9..292 98 -> Plus
arm_2R 15137810..15138317 293..802 99   Plus

BS17164.complete Sequence

806 bp assembled on 2007-05-08

GenBank Submission: FJ638261

> BS17164.complete
GAAGTTATCAGTCGACATGATGCATATTTTGGTGACTCTGCTCCTGGTCG
CTATCCACTCGATACCCACCACCTGGGCCGTCACCTGCACGGGCTGCGTG
GATCTGGATGAGCTGAGTTTCGAGAAGACGGTGGAACGATTTCCCTACTC
CGTAGTGAAATTTGATATCGCATATCCGTATGGGGAAAAGCATGAGGCCT
TTACCGCCTTCTCCAAATCTGCCCACAAGGCAACTAAAGATCTGCTAATA
GCCACCGTGGGTGTCAAGGACTATGGAGAACTGGAGAACAAGGCCCTGGG
CGACCGTTACAAAGTCGACGACAAGAACTTCCCGAGTATCTTCCTGTTCA
AGGGCAACGCTGATGAGTACGTCCAGCTTCCTAGCCACGTCGACGTAACG
CTGGACAATCTGAAGGCTTTTGTCAGTGCCAACACACCTCTGTACATCGG
TCGTGATGGCTGCATCAAAGAGTTCAACGAAGTGCTCAAGAACTATGCCA
ATATCCCCGATGCAGAGCAACTGAAGCTTATCGAAAAGCTGCAGGCCAAG
CAGGAGCAGCTGACCGATCCCGAGCAGCAGCAGAACGCCAGGGCCTATCT
GATCTACATGCGGAAGATCCACGAGGTGGGCTACGATTTCCTGGAGGAGG
AGACCAAGCGACTCCTGCGCCTCAAGGCCGGCAAGGTCACCGAGGCCAAG
AAGGAGGAGCTGCTGAGGAAACTGAACATCCTGGAAGTCTTCAGGGTTCA
CAAGGTCACCAAGACAGCGCCGGAAAAGGAGGAACTGTGAAAGCTTTCTA
GACCAT

BS17164.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:01:12
Subject Length Description Subject Range Query Range Score Percent Strand
wbl-RB 774 CG7225-PB 1..774 17..790 3870 100 Plus
wbl-RA 774 CG7225-PA 1..774 17..790 3870 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:01:13
Subject Length Description Subject Range Query Range Score Percent Strand
wbl-RB 1319 CG7225-RB 431..1205 17..791 3875 100 Plus
wbl-RA 953 CG7225-RA 65..839 17..791 3875 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:01:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19250303..19250803 291..791 2505 100 Plus
2R 25286936 2R 19249825..19250101 17..293 1385 100 Plus
Blast to na_te.dros performed 2014-11-27 08:01:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2754..2867 485..597 151 65.8 Plus

BS17164.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:53 Download gff for BS17164.complete
Subject Subject Range Query Range Percent Splice Strand
wbl-RA 1..774 17..790 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:00:51 Download gff for BS17164.complete
Subject Subject Range Query Range Percent Splice Strand
wbl-RA 58..848 9..802 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:07:18 Download gff for BS17164.complete
Subject Subject Range Query Range Percent Splice Strand
wbl-RA 65..837 17..789 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:54 Download gff for BS17164.complete
Subject Subject Range Query Range Percent Splice Strand
wbl-RA 58..848 9..802 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:09:25 Download gff for BS17164.complete
Subject Subject Range Query Range Percent Splice Strand
wbl-RA 65..837 17..789 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:09:25 Download gff for BS17164.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19249825..19250100 17..292 100 -> Plus
2R 19250305..19250801 293..789 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:07:18 Download gff for BS17164.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15137330..15137605 17..292 100 -> Plus
arm_2R 15137810..15138306 293..789 100   Plus

BS17164.pep Sequence

Translation from 16 to 789

> BS17164.pep
MMHILVTLLLVAIHSIPTTWAVTCTGCVDLDELSFEKTVERFPYSVVKFD
IAYPYGEKHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKV
DDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANTPLYIGRDGCI
KEFNEVLKNYANIPDAEQLKLIEKLQAKQEQLTDPEQQQNARAYLIYMRK
IHEVGYDFLEEETKRLLRLKAGKVTEAKKEELLRKLNILEVFRVHKVTKT
APEKEEL*

BS17164.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:07
Subject Length Description Subject Range Query Range Score Percent Strand
wbl-PB 257 CG7225-PB 1..257 1..257 1320 100 Plus
wbl-PA 257 CG7225-PA 1..257 1..257 1320 100 Plus