Clone Sequence Records
BS17170.3prime Sequence
390 bp (390 high quality bases) assembled on 2007-05-15
> BS17170.3prime
ATGGTCTAGAAAGCTTCTACCACTGGATGGGCTGAGGAGCGTAGACGGGG
GCGTACTGCGAGTAGGCACCGGCGGATCCATAGCTGGGAGCTGGGGCGCT
GCATGGCACTGGGGCCAGGTTGGGCTGGCAGCTGAACAGGTAGTTCTTGG
GGCAAGGAGGAGCCGGGATCGAGACCGGAGCGGCGGCGTAGGATGGAGCA
GCTGGGGCGGCGTAGGCCTGGGGAGCGGCAGCCGGAGCGGAGTAGGATGG
AGCCGGAGCAGCGGCGGGCTTGCCGTAGCCACCACCGTACGAGGAGCCGA
GCATCTTATCCTCCTTATCGGCGGCAACGAAAGCGGCCAGCAGGCAGATG
GTGGAGACGATGGCGATGCACTTCATGTCGACTGATAACT
BS17170.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:08:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9271-PA | 360 | Vm34Ca-RA | 1..360 | 376..17 | 1800 | 100 | Minus |
CG9048-PA | 426 | Vm26Aa-RA | 214..323 | 169..60 | 375 | 93.6 | Minus |
CG9046-PA | 507 | Vm26Ab-RA | 367..399 | 154..122 | 165 | 100 | Minus |
CG16874-PA | 351 | Vm32E-RA | 133..169 | 145..109 | 135 | 94.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:03:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vm34Ca-RA | 491 | CG9271-RA | 45..406 | 378..17 | 1810 | 100 | Minus |
Vm26Aa-RB | 745 | CG9048-RB | 295..404 | 169..60 | 445 | 93.6 | Minus |
Vm26Aa-RA | 641 | CG9048-RA | 295..404 | 169..60 | 445 | 93.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:03:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13411226..13411587 | 17..378 | 1810 | 100 | Plus |
2L | 23513712 | 2L | 5959937..5960046 | 60..169 | 445 | 93.6 | Plus |
2L | 23513712 | 2L | 5957403..5957534 | 183..52 | 300 | 81.8 | Minus |
2L | 23513712 | 2L | 11171466..11171524 | 109..167 | 205 | 89.8 | Plus |
Blast to na_te.dros performed on 2015-02-04 21:03:56 has no hits.
BS17170.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:08:45 Download gff for
BS17170.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9271-PA | 1..360 | 17..376 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:38:40 Download gff for
BS17170.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vm34Ca-RA | 24..391 | 17..384 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:38:50 Download gff for
BS17170.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vm34Ca-RA | 39..406 | 17..384 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:38:50 Download gff for
BS17170.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13411226..13411593 | 17..384 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:38:40 Download gff for
BS17170.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13411226..13411593 | 17..384 | 99 | | Plus |
BS17170.5prime Sequence
390 bp (390 high quality bases) assembled on 2007-05-15
> BS17170.5prime
GAAGTTATCAGTCGACATGAAGTGCATCGCCATCGTCTCCACCATCTGCC
TGCTGGCCGCTTTCGTTGCCGCCGATAAGGAGGATAAGATGCTCGGCTCC
TCGTACGGTGGTGGCTACGGCAAGCCCGCCGCTGCTCCGGCTCCATCCTA
CTCCGCTCCGGCTGCCGCTCCCCAGGCCTACGCCGCCCCAGCTGCTCCAT
CCTACGCCGCCGCTCCGGTCTCGATCCCGGCTCCTCCTTGCCCCAAGAAC
TACCTGTTCAGCTGCCAGCCCAACCTGGCCCCAGTGCCATGCAGCGCCCC
AGCTCCCAGCTATGGATCCGCCGGTGCCTACTCGCAGTACGCCCCCGTCT
ACGCTCCTCAGCCCATCCAGTGGTAGAAGCTTTCTAGACC
BS17170.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:04:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9271-PA | 360 | Vm34Ca-RA | 1..360 | 17..376 | 1800 | 100 | Plus |
CG9048-PA | 426 | Vm26Aa-RA | 214..323 | 224..333 | 375 | 93.6 | Plus |
CG9046-PA | 507 | Vm26Ab-RA | 367..399 | 239..271 | 165 | 100 | Plus |
CG16874-PA | 351 | Vm32E-RA | 133..169 | 248..284 | 135 | 94.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:05:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vm34Ca-RA | 491 | CG9271-RA | 45..406 | 15..376 | 1810 | 100 | Plus |
Vm26Aa-RB | 745 | CG9048-RB | 295..404 | 224..333 | 445 | 93.6 | Plus |
Vm26Aa-RA | 641 | CG9048-RA | 295..404 | 224..333 | 445 | 93.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:05:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13411226..13411587 | 376..15 | 1810 | 100 | Minus |
2L | 23513712 | 2L | 5959937..5960046 | 333..224 | 445 | 93.6 | Minus |
2L | 23513712 | 2L | 5957403..5957534 | 210..341 | 300 | 81.8 | Plus |
2L | 23513712 | 2L | 11171466..11171524 | 284..226 | 205 | 89.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:05:17 has no hits.
BS17170.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:04:33 Download gff for
BS17170.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9271-PA | 1..360 | 17..376 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:52:38 Download gff for
BS17170.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vm34Ca-RA | 24..391 | 9..376 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:03:37 Download gff for
BS17170.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vm34Ca-RA | 39..406 | 9..376 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:03:37 Download gff for
BS17170.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13411226..13411593 | 9..376 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:52:38 Download gff for
BS17170.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13411226..13411593 | 9..376 | 99 | | Minus |
BS17170.complete Sequence
392 bp assembled on 2007-05-08
GenBank Submission: FJ638262
> BS17170.complete
GAAGTTATCAGTCGACATGAAGTGCATCGCCATCGTCTCCACCATCTGCC
TGCTGGCCGCTTTCGTTGCCGCCGATAAGGAGGATAAGATGCTCGGCTCC
TCGTACGGTGGTGGCTACGGCAAGCCCGCCGCTGCTCCGGCTCCATCCTA
CTCCGCTCCGGCTGCCGCTCCCCAGGCCTACGCCGCCCCAGCTGCTCCAT
CCTACGCCGCCGCTCCGGTCTCGATCCCGGCTCCTCCTTGCCCCAAGAAC
TACCTGTTCAGCTGCCAGCCCAACCTGGCCCCAGTGCCATGCAGCGCCCC
AGCTCCCAGCTATGGATCCGCCGGTGCCTACTCGCAGTACGCCCCCGTCT
ACGCTCCTCAGCCCATCCAGTGGTAGAAGCTTTCTAGACCAT
BS17170.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:21:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vm34Ca-RA | 360 | CG9271-PA | 1..360 | 17..376 | 1800 | 100 | Plus |
Vm26Aa-RB | 426 | CG9048-PB | 214..323 | 224..333 | 445 | 93.6 | Plus |
Vm26Aa-RA | 426 | CG9048-PA | 214..323 | 224..333 | 445 | 93.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vm34Ca-RA | 491 | CG9271-RA | 45..406 | 15..376 | 1810 | 100 | Plus |
Vm26Aa-RB | 745 | CG9048-RB | 295..404 | 224..333 | 445 | 93.6 | Plus |
Vm26Aa-RA | 641 | CG9048-RA | 295..404 | 224..333 | 445 | 93.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13411226..13411587 | 376..15 | 1810 | 100 | Minus |
2L | 23513712 | 2L | 5959937..5960046 | 333..224 | 445 | 93.6 | Minus |
2L | 23513712 | 2L | 5957403..5957534 | 210..341 | 300 | 81.8 | Plus |
2L | 23513712 | 2L | 11171466..11171524 | 284..226 | 205 | 89.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:21:10 has no hits.
BS17170.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:55 Download gff for
BS17170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vm34Ca-RA | 1..360 | 17..376 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:00:53 Download gff for
BS17170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vm34Ca-RA | 39..406 | 9..376 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:14 Download gff for
BS17170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vm34Ca-RA | 32..391 | 17..376 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:55 Download gff for
BS17170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vm34Ca-RA | 39..406 | 9..376 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:46 Download gff for
BS17170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vm34Ca-RA | 47..406 | 17..376 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:46 Download gff for
BS17170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13411226..13411585 | 17..376 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:14 Download gff for
BS17170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13411226..13411585 | 17..376 | 100 | | Minus |
BS17170.pep Sequence
Translation from 16 to 375
> BS17170.pep
MKCIAIVSTICLLAAFVAADKEDKMLGSSYGGGYGKPAAAPAPSYSAPAA
APQAYAAPAAPSYAAAPVSIPAPPCPKNYLFSCQPNLAPVPCSAPAPSYG
SAGAYSQYAPVYAPQPIQW*
BS17170.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vm34Ca-PA | 119 | CG9271-PA | 1..119 | 1..119 | 638 | 100 | Plus |
Vm26Ab-PB | 168 | CG9046-PB | 50..161 | 32..113 | 302 | 58.9 | Plus |
Vm26Ab-PA | 168 | CG9046-PA | 50..161 | 32..113 | 302 | 58.9 | Plus |
Vm32E-PB | 116 | CG16874-PB | 16..83 | 33..116 | 227 | 53.6 | Plus |
Vm32E-PA | 116 | CG16874-PA | 16..83 | 33..116 | 227 | 53.6 | Plus |