Clone BS17170 Report

Search the DGRC for BS17170

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:171
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptVm34Ca-RA
Protein status:BS17170.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS17170.3prime Sequence

390 bp (390 high quality bases) assembled on 2007-05-15

> BS17170.3prime
ATGGTCTAGAAAGCTTCTACCACTGGATGGGCTGAGGAGCGTAGACGGGG
GCGTACTGCGAGTAGGCACCGGCGGATCCATAGCTGGGAGCTGGGGCGCT
GCATGGCACTGGGGCCAGGTTGGGCTGGCAGCTGAACAGGTAGTTCTTGG
GGCAAGGAGGAGCCGGGATCGAGACCGGAGCGGCGGCGTAGGATGGAGCA
GCTGGGGCGGCGTAGGCCTGGGGAGCGGCAGCCGGAGCGGAGTAGGATGG
AGCCGGAGCAGCGGCGGGCTTGCCGTAGCCACCACCGTACGAGGAGCCGA
GCATCTTATCCTCCTTATCGGCGGCAACGAAAGCGGCCAGCAGGCAGATG
GTGGAGACGATGGCGATGCACTTCATGTCGACTGATAACT

BS17170.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:08:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG9271-PA 360 Vm34Ca-RA 1..360 376..17 1800 100 Minus
CG9048-PA 426 Vm26Aa-RA 214..323 169..60 375 93.6 Minus
CG9046-PA 507 Vm26Ab-RA 367..399 154..122 165 100 Minus
CG16874-PA 351 Vm32E-RA 133..169 145..109 135 94.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:03:58
Subject Length Description Subject Range Query Range Score Percent Strand
Vm34Ca-RA 491 CG9271-RA 45..406 378..17 1810 100 Minus
Vm26Aa-RB 745 CG9048-RB 295..404 169..60 445 93.6 Minus
Vm26Aa-RA 641 CG9048-RA 295..404 169..60 445 93.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:03:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13411226..13411587 17..378 1810 100 Plus
2L 23513712 2L 5959937..5960046 60..169 445 93.6 Plus
2L 23513712 2L 5957403..5957534 183..52 300 81.8 Minus
2L 23513712 2L 11171466..11171524 109..167 205 89.8 Plus
Blast to na_te.dros performed on 2015-02-04 21:03:56 has no hits.

BS17170.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:08:45 Download gff for BS17170.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9271-PA 1..360 17..376 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:38:40 Download gff for BS17170.3prime
Subject Subject Range Query Range Percent Splice Strand
Vm34Ca-RA 24..391 17..384 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:38:50 Download gff for BS17170.3prime
Subject Subject Range Query Range Percent Splice Strand
Vm34Ca-RA 39..406 17..384 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:38:50 Download gff for BS17170.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13411226..13411593 17..384 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:38:40 Download gff for BS17170.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13411226..13411593 17..384 99   Plus

BS17170.5prime Sequence

390 bp (390 high quality bases) assembled on 2007-05-15

> BS17170.5prime
GAAGTTATCAGTCGACATGAAGTGCATCGCCATCGTCTCCACCATCTGCC
TGCTGGCCGCTTTCGTTGCCGCCGATAAGGAGGATAAGATGCTCGGCTCC
TCGTACGGTGGTGGCTACGGCAAGCCCGCCGCTGCTCCGGCTCCATCCTA
CTCCGCTCCGGCTGCCGCTCCCCAGGCCTACGCCGCCCCAGCTGCTCCAT
CCTACGCCGCCGCTCCGGTCTCGATCCCGGCTCCTCCTTGCCCCAAGAAC
TACCTGTTCAGCTGCCAGCCCAACCTGGCCCCAGTGCCATGCAGCGCCCC
AGCTCCCAGCTATGGATCCGCCGGTGCCTACTCGCAGTACGCCCCCGTCT
ACGCTCCTCAGCCCATCCAGTGGTAGAAGCTTTCTAGACC

BS17170.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:04:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG9271-PA 360 Vm34Ca-RA 1..360 17..376 1800 100 Plus
CG9048-PA 426 Vm26Aa-RA 214..323 224..333 375 93.6 Plus
CG9046-PA 507 Vm26Ab-RA 367..399 239..271 165 100 Plus
CG16874-PA 351 Vm32E-RA 133..169 248..284 135 94.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:05:18
Subject Length Description Subject Range Query Range Score Percent Strand
Vm34Ca-RA 491 CG9271-RA 45..406 15..376 1810 100 Plus
Vm26Aa-RB 745 CG9048-RB 295..404 224..333 445 93.6 Plus
Vm26Aa-RA 641 CG9048-RA 295..404 224..333 445 93.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:05:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13411226..13411587 376..15 1810 100 Minus
2L 23513712 2L 5959937..5960046 333..224 445 93.6 Minus
2L 23513712 2L 5957403..5957534 210..341 300 81.8 Plus
2L 23513712 2L 11171466..11171524 284..226 205 89.8 Minus
Blast to na_te.dros performed on 2015-02-12 10:05:17 has no hits.

BS17170.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:04:33 Download gff for BS17170.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9271-PA 1..360 17..376 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:52:38 Download gff for BS17170.5prime
Subject Subject Range Query Range Percent Splice Strand
Vm34Ca-RA 24..391 9..376 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:03:37 Download gff for BS17170.5prime
Subject Subject Range Query Range Percent Splice Strand
Vm34Ca-RA 39..406 9..376 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:03:37 Download gff for BS17170.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13411226..13411593 9..376 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:52:38 Download gff for BS17170.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13411226..13411593 9..376 99   Minus

BS17170.complete Sequence

392 bp assembled on 2007-05-08

GenBank Submission: FJ638262

> BS17170.complete
GAAGTTATCAGTCGACATGAAGTGCATCGCCATCGTCTCCACCATCTGCC
TGCTGGCCGCTTTCGTTGCCGCCGATAAGGAGGATAAGATGCTCGGCTCC
TCGTACGGTGGTGGCTACGGCAAGCCCGCCGCTGCTCCGGCTCCATCCTA
CTCCGCTCCGGCTGCCGCTCCCCAGGCCTACGCCGCCCCAGCTGCTCCAT
CCTACGCCGCCGCTCCGGTCTCGATCCCGGCTCCTCCTTGCCCCAAGAAC
TACCTGTTCAGCTGCCAGCCCAACCTGGCCCCAGTGCCATGCAGCGCCCC
AGCTCCCAGCTATGGATCCGCCGGTGCCTACTCGCAGTACGCCCCCGTCT
ACGCTCCTCAGCCCATCCAGTGGTAGAAGCTTTCTAGACCAT

BS17170.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:21:11
Subject Length Description Subject Range Query Range Score Percent Strand
Vm34Ca-RA 360 CG9271-PA 1..360 17..376 1800 100 Plus
Vm26Aa-RB 426 CG9048-PB 214..323 224..333 445 93.6 Plus
Vm26Aa-RA 426 CG9048-PA 214..323 224..333 445 93.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:11
Subject Length Description Subject Range Query Range Score Percent Strand
Vm34Ca-RA 491 CG9271-RA 45..406 15..376 1810 100 Plus
Vm26Aa-RB 745 CG9048-RB 295..404 224..333 445 93.6 Plus
Vm26Aa-RA 641 CG9048-RA 295..404 224..333 445 93.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13411226..13411587 376..15 1810 100 Minus
2L 23513712 2L 5959937..5960046 333..224 445 93.6 Minus
2L 23513712 2L 5957403..5957534 210..341 300 81.8 Plus
2L 23513712 2L 11171466..11171524 284..226 205 89.8 Minus
Blast to na_te.dros performed on 2014-11-28 01:21:10 has no hits.

BS17170.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:55 Download gff for BS17170.complete
Subject Subject Range Query Range Percent Splice Strand
Vm34Ca-RA 1..360 17..376 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:00:53 Download gff for BS17170.complete
Subject Subject Range Query Range Percent Splice Strand
Vm34Ca-RA 39..406 9..376 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:14 Download gff for BS17170.complete
Subject Subject Range Query Range Percent Splice Strand
Vm34Ca-RA 32..391 17..376 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:55 Download gff for BS17170.complete
Subject Subject Range Query Range Percent Splice Strand
Vm34Ca-RA 39..406 9..376 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:46 Download gff for BS17170.complete
Subject Subject Range Query Range Percent Splice Strand
Vm34Ca-RA 47..406 17..376 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:46 Download gff for BS17170.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13411226..13411585 17..376 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:14 Download gff for BS17170.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13411226..13411585 17..376 100   Minus

BS17170.pep Sequence

Translation from 16 to 375

> BS17170.pep
MKCIAIVSTICLLAAFVAADKEDKMLGSSYGGGYGKPAAAPAPSYSAPAA
APQAYAAPAAPSYAAAPVSIPAPPCPKNYLFSCQPNLAPVPCSAPAPSYG
SAGAYSQYAPVYAPQPIQW*

BS17170.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:05
Subject Length Description Subject Range Query Range Score Percent Strand
Vm34Ca-PA 119 CG9271-PA 1..119 1..119 638 100 Plus
Vm26Ab-PB 168 CG9046-PB 50..161 32..113 302 58.9 Plus
Vm26Ab-PA 168 CG9046-PA 50..161 32..113 302 58.9 Plus
Vm32E-PB 116 CG16874-PB 16..83 33..116 227 53.6 Plus
Vm32E-PA 116 CG16874-PA 16..83 33..116 227 53.6 Plus