Clone BS17171 Report

Search the DGRC for BS17171

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:171
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptPGRP-SB1-RA
Protein status:BS17171.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS17171.3prime Sequence

603 bp (603 high quality bases) assembled on 2007-05-15

> BS17171.3prime
ATGGTCTAGAAAGCTTCTAGTTTTGCCTCCAGTGCGGCCACGTCTTGATC
TCGTTGTACAGAGCATCACCTGGGCAGGAGGTGGCCTTGGTCTGCCGATG
ACCGAACAGCGTGTAGTTATCCTTGAGGTATCCACGCTGCTTGGCCAGCT
CGATTAGATCCTTGGCGTTCTGGAGCATCTGGGCGGATGGGGCACTGCGT
TCGAAGTTGCCAATGAAGACGATGCCAATGCTCTTGCGATTATAGTTGGG
GGAGTGTGATCCCTGGAGCCCGAAACCACGACCCTCGTACACCTTGCCAT
CACCGGCCACGATAAAGTTATATCCAATATCGCTGAAATTGCGGCGACCC
TTGTGATCCGACTGAATGTTCTTGATCATGCGCTTGCACTGCTCGGATGT
GGAGCAGCCATTAGGATTGTCCGAATGATGGATGATCACATAGTCGACGG
CGCCGGAAATCCTAGAAGGCGATCGAGCAGACACCGCACCCCAACTGCTG
CGTGGTTCAATCTGCAGGGCATTGGCGGATAGAGCTAAGCAGCAAAGCAC
TAAAGCGGCCACAAAACTAATTGCCGTTGATGTGTTCATGTCGACTGATA
ACT

BS17171.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG9681-PA 573 PGRP-SB1-RA 1..573 589..17 2865 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:09:37
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-SB1-RA 623 CG9681-RA 7..581 589..15 2875 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:09:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16727341..16727862 15..536 2610 100 Plus
3L 28110227 3L 16727929..16727983 535..589 275 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:09:36 has no hits.

BS17171.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:08:53 Download gff for BS17171.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9681-PA 1..573 17..589 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:50:54 Download gff for BS17171.3prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-SB1-RA 1..581 15..592 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:10:43 Download gff for BS17171.3prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-SB1-RA 1..581 15..592 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:10:43 Download gff for BS17171.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16727341..16727860 15..534 100 <- Plus
3L 16727929..16727983 535..589 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:50:54 Download gff for BS17171.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16720441..16720960 15..534 100 <- Plus
arm_3L 16721029..16721083 535..589 100   Plus

BS17171.5prime Sequence

603 bp (603 high quality bases) assembled on 2007-05-15

> BS17171.5prime
GAAGTTATCAGTCGACATGAACACATCAACGGCAATTAGTTTTGTGGCCG
CTTTAGTGCTTTGCTGCTTAGCTCTATCCGCCAATGCCCTGCAGATTGAA
CCACGCAGCAGTTGGGGTGCGGTGTCTGCTCGATCGCCTTCTAGGATTTC
CGGCGCCGTCGACTATGTGATCATCCATCATTCGGACAATCCTAATGGCT
GCTCCACATCCGAGCAGTGCAAGCGCATGATCAAGAACATTCAGTCGGAT
CACAAGGGTCGCCGCAATTTCAGCGATATTGGATATAACTTTATCGTGGC
CGGTGATGGCAAGGTGTACGAGGGTCGTGGTTTCGGGCTCCAGGGATCAC
ACTCCCCCAACTATAATCGCAAGAGCATTGGCATCGTCTTCATTGGCAAC
TTCGAACGCAGTGCCCCATCCGCCCAGATGCTCCAGAACGCCAAGGATCT
AATCGAGCTGGCCAAGCAGCGTGGATACCTCAAGGATAACTACACGCTGT
TCGGTCATCGGCAGACCAAGGCCACCTCCTGCCCAGGTGATGCTCTGTAC
AACGAGATCAAGACGTGGCCGCACTGGAGGCAAAACTAGAAGCTTTCTAG
ACC

BS17171.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:04:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG9681-PA 573 PGRP-SB1-RA 1..573 17..589 2865 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:00:59
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-SB1-RA 623 CG9681-RA 7..581 17..591 2875 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:00:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16727341..16727862 591..70 2610 100 Minus
3L 28110227 3L 16727929..16727983 71..17 275 100 Minus
Blast to na_te.dros performed on 2015-02-04 21:00:58 has no hits.

BS17171.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:04:41 Download gff for BS17171.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9681-PA 1..573 17..589 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:38:03 Download gff for BS17171.5prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-SB1-RA 1..581 14..591 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:38:09 Download gff for BS17171.5prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-SB1-RA 1..581 14..591 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:38:09 Download gff for BS17171.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16727341..16727860 72..591 100 <- Minus
3L 16727929..16727983 17..71 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:38:03 Download gff for BS17171.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16720441..16720960 72..591 100 <- Minus
arm_3L 16721029..16721083 17..71 100   Minus

BS17171.complete Sequence

605 bp assembled on 2007-05-08

GenBank Submission: FJ638263

> BS17171.complete
GAAGTTATCAGTCGACATGAACACATCAACGGCAATTAGTTTTGTGGCCG
CTTTAGTGCTTTGCTGCTTAGCTCTATCCGCCAATGCCCTGCAGATTGAA
CCACGCAGCAGTTGGGGTGCGGTGTCTGCTCGATCGCCTTCTAGGATTTC
CGGCGCCGTCGACTATGTGATCATCCATCATTCGGACAATCCTAATGGCT
GCTCCACATCCGAGCAGTGCAAGCGCATGATCAAGAACATTCAGTCGGAT
CACAAGGGTCGCCGCAATTTCAGCGATATTGGATATAACTTTATCGTGGC
CGGTGATGGCAAGGTGTACGAGGGTCGTGGTTTCGGGCTCCAGGGATCAC
ACTCCCCCAACTATAATCGCAAGAGCATTGGCATCGTCTTCATTGGCAAC
TTCGAACGCAGTGCCCCATCCGCCCAGATGCTCCAGAACGCCAAGGATCT
AATCGAGCTGGCCAAGCAGCGTGGATACCTCAAGGATAACTACACGCTGT
TCGGTCATCGGCAGACCAAGGCCACCTCCTGCCCAGGTGATGCTCTGTAC
AACGAGATCAAGACGTGGCCGCACTGGAGGCAAAACTAGAAGCTTTCTAG
ACCAT

BS17171.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:40:55
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-SB1-RA 573 CG9681-PA 1..573 17..589 2865 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:56
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-SB1-RA 623 CG9681-RA 7..581 17..591 2875 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16727341..16727862 591..70 2610 100 Minus
3L 28110227 3L 16727929..16727983 71..17 275 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:40:54 has no hits.

BS17171.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:36 Download gff for BS17171.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-SB1-RA 1..573 17..589 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:52:20 Download gff for BS17171.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-SB1-RA 36..610 17..591 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:41:46 Download gff for BS17171.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-SB1-RA 7..579 17..589 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:36 Download gff for BS17171.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-SB1-RA 36..610 17..591 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:21 Download gff for BS17171.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-SB1-RA 7..579 17..589 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:21 Download gff for BS17171.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16727929..16727983 17..71 100   Minus
3L 16727343..16727860 72..589 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:41:46 Download gff for BS17171.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16720443..16720960 72..589 100 <- Minus
arm_3L 16721029..16721083 17..71 100   Minus

BS17171.pep Sequence

Translation from 16 to 588

> BS17171.pep
MNTSTAISFVAALVLCCLALSANALQIEPRSSWGAVSARSPSRISGAVDY
VIIHHSDNPNGCSTSEQCKRMIKNIQSDHKGRRNFSDIGYNFIVAGDGKV
YEGRGFGLQGSHSPNYNRKSIGIVFIGNFERSAPSAQMLQNAKDLIELAK
QRGYLKDNYTLFGHRQTKATSCPGDALYNEIKTWPHWRQN*

BS17171.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:36
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-SB1-PA 190 CG9681-PA 1..190 1..190 1009 100 Plus
PGRP-SB2-PA 182 CG9697-PA 6..179 12..188 456 52 Plus
PGRP-SC2-PA 184 CG14745-PA 5..183 12..188 395 41.1 Plus
PGRP-LB-PF 215 CG14704-PF 18..175 30..187 393 44.9 Plus
PGRP-LB-PE 215 CG14704-PE 18..175 30..187 393 44.9 Plus