Clone Sequence Records
BS17171.3prime Sequence
603 bp (603 high quality bases) assembled on 2007-05-15
> BS17171.3prime
ATGGTCTAGAAAGCTTCTAGTTTTGCCTCCAGTGCGGCCACGTCTTGATC
TCGTTGTACAGAGCATCACCTGGGCAGGAGGTGGCCTTGGTCTGCCGATG
ACCGAACAGCGTGTAGTTATCCTTGAGGTATCCACGCTGCTTGGCCAGCT
CGATTAGATCCTTGGCGTTCTGGAGCATCTGGGCGGATGGGGCACTGCGT
TCGAAGTTGCCAATGAAGACGATGCCAATGCTCTTGCGATTATAGTTGGG
GGAGTGTGATCCCTGGAGCCCGAAACCACGACCCTCGTACACCTTGCCAT
CACCGGCCACGATAAAGTTATATCCAATATCGCTGAAATTGCGGCGACCC
TTGTGATCCGACTGAATGTTCTTGATCATGCGCTTGCACTGCTCGGATGT
GGAGCAGCCATTAGGATTGTCCGAATGATGGATGATCACATAGTCGACGG
CGCCGGAAATCCTAGAAGGCGATCGAGCAGACACCGCACCCCAACTGCTG
CGTGGTTCAATCTGCAGGGCATTGGCGGATAGAGCTAAGCAGCAAAGCAC
TAAAGCGGCCACAAAACTAATTGCCGTTGATGTGTTCATGTCGACTGATA
ACT
BS17171.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:08:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9681-PA | 573 | PGRP-SB1-RA | 1..573 | 589..17 | 2865 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:09:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-SB1-RA | 623 | CG9681-RA | 7..581 | 589..15 | 2875 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:09:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16727341..16727862 | 15..536 | 2610 | 100 | Plus |
3L | 28110227 | 3L | 16727929..16727983 | 535..589 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:09:36 has no hits.
BS17171.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:08:53 Download gff for
BS17171.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9681-PA | 1..573 | 17..589 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:50:54 Download gff for
BS17171.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-SB1-RA | 1..581 | 15..592 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:10:43 Download gff for
BS17171.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-SB1-RA | 1..581 | 15..592 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:10:43 Download gff for
BS17171.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16727341..16727860 | 15..534 | 100 | <- | Plus |
3L | 16727929..16727983 | 535..589 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:50:54 Download gff for
BS17171.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16720441..16720960 | 15..534 | 100 | <- | Plus |
arm_3L | 16721029..16721083 | 535..589 | 100 | | Plus |
BS17171.5prime Sequence
603 bp (603 high quality bases) assembled on 2007-05-15
> BS17171.5prime
GAAGTTATCAGTCGACATGAACACATCAACGGCAATTAGTTTTGTGGCCG
CTTTAGTGCTTTGCTGCTTAGCTCTATCCGCCAATGCCCTGCAGATTGAA
CCACGCAGCAGTTGGGGTGCGGTGTCTGCTCGATCGCCTTCTAGGATTTC
CGGCGCCGTCGACTATGTGATCATCCATCATTCGGACAATCCTAATGGCT
GCTCCACATCCGAGCAGTGCAAGCGCATGATCAAGAACATTCAGTCGGAT
CACAAGGGTCGCCGCAATTTCAGCGATATTGGATATAACTTTATCGTGGC
CGGTGATGGCAAGGTGTACGAGGGTCGTGGTTTCGGGCTCCAGGGATCAC
ACTCCCCCAACTATAATCGCAAGAGCATTGGCATCGTCTTCATTGGCAAC
TTCGAACGCAGTGCCCCATCCGCCCAGATGCTCCAGAACGCCAAGGATCT
AATCGAGCTGGCCAAGCAGCGTGGATACCTCAAGGATAACTACACGCTGT
TCGGTCATCGGCAGACCAAGGCCACCTCCTGCCCAGGTGATGCTCTGTAC
AACGAGATCAAGACGTGGCCGCACTGGAGGCAAAACTAGAAGCTTTCTAG
ACC
BS17171.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:04:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9681-PA | 573 | PGRP-SB1-RA | 1..573 | 17..589 | 2865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:00:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-SB1-RA | 623 | CG9681-RA | 7..581 | 17..591 | 2875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:00:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16727341..16727862 | 591..70 | 2610 | 100 | Minus |
3L | 28110227 | 3L | 16727929..16727983 | 71..17 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 21:00:58 has no hits.
BS17171.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:04:41 Download gff for
BS17171.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9681-PA | 1..573 | 17..589 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:38:03 Download gff for
BS17171.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-SB1-RA | 1..581 | 14..591 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:38:09 Download gff for
BS17171.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-SB1-RA | 1..581 | 14..591 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:38:09 Download gff for
BS17171.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16727341..16727860 | 72..591 | 100 | <- | Minus |
3L | 16727929..16727983 | 17..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:38:03 Download gff for
BS17171.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16720441..16720960 | 72..591 | 100 | <- | Minus |
arm_3L | 16721029..16721083 | 17..71 | 100 | | Minus |
BS17171.complete Sequence
605 bp assembled on 2007-05-08
GenBank Submission: FJ638263
> BS17171.complete
GAAGTTATCAGTCGACATGAACACATCAACGGCAATTAGTTTTGTGGCCG
CTTTAGTGCTTTGCTGCTTAGCTCTATCCGCCAATGCCCTGCAGATTGAA
CCACGCAGCAGTTGGGGTGCGGTGTCTGCTCGATCGCCTTCTAGGATTTC
CGGCGCCGTCGACTATGTGATCATCCATCATTCGGACAATCCTAATGGCT
GCTCCACATCCGAGCAGTGCAAGCGCATGATCAAGAACATTCAGTCGGAT
CACAAGGGTCGCCGCAATTTCAGCGATATTGGATATAACTTTATCGTGGC
CGGTGATGGCAAGGTGTACGAGGGTCGTGGTTTCGGGCTCCAGGGATCAC
ACTCCCCCAACTATAATCGCAAGAGCATTGGCATCGTCTTCATTGGCAAC
TTCGAACGCAGTGCCCCATCCGCCCAGATGCTCCAGAACGCCAAGGATCT
AATCGAGCTGGCCAAGCAGCGTGGATACCTCAAGGATAACTACACGCTGT
TCGGTCATCGGCAGACCAAGGCCACCTCCTGCCCAGGTGATGCTCTGTAC
AACGAGATCAAGACGTGGCCGCACTGGAGGCAAAACTAGAAGCTTTCTAG
ACCAT
BS17171.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:40:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-SB1-RA | 573 | CG9681-PA | 1..573 | 17..589 | 2865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-SB1-RA | 623 | CG9681-RA | 7..581 | 17..591 | 2875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16727341..16727862 | 591..70 | 2610 | 100 | Minus |
3L | 28110227 | 3L | 16727929..16727983 | 71..17 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:40:54 has no hits.
BS17171.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:36 Download gff for
BS17171.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-SB1-RA | 1..573 | 17..589 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:52:20 Download gff for
BS17171.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-SB1-RA | 36..610 | 17..591 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:41:46 Download gff for
BS17171.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-SB1-RA | 7..579 | 17..589 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:36 Download gff for
BS17171.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-SB1-RA | 36..610 | 17..591 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:21 Download gff for
BS17171.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-SB1-RA | 7..579 | 17..589 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:21 Download gff for
BS17171.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16727929..16727983 | 17..71 | 100 | | Minus |
3L | 16727343..16727860 | 72..589 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:41:46 Download gff for
BS17171.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16720443..16720960 | 72..589 | 100 | <- | Minus |
arm_3L | 16721029..16721083 | 17..71 | 100 | | Minus |
BS17171.pep Sequence
Translation from 16 to 588
> BS17171.pep
MNTSTAISFVAALVLCCLALSANALQIEPRSSWGAVSARSPSRISGAVDY
VIIHHSDNPNGCSTSEQCKRMIKNIQSDHKGRRNFSDIGYNFIVAGDGKV
YEGRGFGLQGSHSPNYNRKSIGIVFIGNFERSAPSAQMLQNAKDLIELAK
QRGYLKDNYTLFGHRQTKATSCPGDALYNEIKTWPHWRQN*
BS17171.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-SB1-PA | 190 | CG9681-PA | 1..190 | 1..190 | 1009 | 100 | Plus |
PGRP-SB2-PA | 182 | CG9697-PA | 6..179 | 12..188 | 456 | 52 | Plus |
PGRP-SC2-PA | 184 | CG14745-PA | 5..183 | 12..188 | 395 | 41.1 | Plus |
PGRP-LB-PF | 215 | CG14704-PF | 18..175 | 30..187 | 393 | 44.9 | Plus |
PGRP-LB-PE | 215 | CG14704-PE | 18..175 | 30..187 | 393 | 44.9 | Plus |