Clone Sequence Records
BS17172.3prime Sequence
453 bp (453 high quality bases) assembled on 2007-05-15
> BS17172.3prime
ATGGTCTAGAAAGCTTCTAGTACTTGTGTGGGCGAACGGGCCGCTCGGGA
TCAAAGAGCTTGGGGTCCTGCAGGAAGTCGAGGTCCTTGTGGTATCCCGG
CATCAGCAGGCACTGCTGGGCACGCAGAATGGCCTGCTCCACTTGCTCCT
GCCGGCGCTTGCATAATCCGGTGATGTGACGCCCGTAAATGCGACCCGTG
TATGGCGATTGGAATTGGGAGAGCAGCTTCACGTTCTTGTAGTGCGGCTC
GATGCTGTGCTTGCATAGGATGCACTGCTGGGGGTCCTTTTCATAGGGAT
TCTTTATGTCGATCGGCAGATCCAAGTCGGACGACTCCGGGGCAGCTGAA
TAGAGGCGGCTGACGGTTCCCAGCTGCTGTCTGCCCACCAGATTGACCAA
CGTGGCATTTTGTGCCAGAAACTTTCCTAATTTCAACATGTCGACTGATA
ACT
BS17172.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:09:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9688-PA | 423 | mRpS18C-RA | 1..423 | 439..17 | 2115 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:04:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS18C-RA | 528 | CG9688-RA | 38..461 | 440..17 | 2120 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:04:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30424100..30424489 | 406..17 | 1950 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 21:04:08 has no hits.
BS17172.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:09:02 Download gff for
BS17172.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9688-PA | 1..423 | 17..439 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:38:42 Download gff for
BS17172.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS18C-RA | 38..467 | 8..440 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:38:52 Download gff for
BS17172.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS18C-RA | 38..467 | 8..440 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:38:52 Download gff for
BS17172.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30424011..30424045 | 406..440 | 100 | -> | Minus |
3R | 30424101..30424495 | 8..405 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:38:42 Download gff for
BS17172.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26249733..26249767 | 406..440 | 100 | -> | Minus |
arm_3R | 26249823..26250217 | 8..405 | 98 | | Minus |
BS17172.5prime Sequence
453 bp (453 high quality bases) assembled on 2007-05-15
> BS17172.5prime
GAAGTTATCAGTCGACATGTTGAAATTAGGAAAGTTTCTGGCACAAAATG
CCACGTTGGTCAATCTGGTGGGCAGACAGCAGCTGGGAACCGTCAGCCGC
CTCTATTCAGCTGCCCCGGAGTCGTCCGACTTGGATCTGCCGATCGACAT
AAAGAATCCCTATGAAAAGGACCCCCAGCAGTGCATCCTATGCAAGCACA
GCATCGAGCCGCACTACAAGAACGTGAAGCTGCTCTCCCAATTCCAATCG
CCATACACGGGTCGCATTTACGGGCGTCACATCACCGGATTATGCAAGCG
CCGGCAGGAGCAAGTGGAGCAGGCCATTCTGCGTGCCCAGCAGTGCCTGC
TGATGCCGGGATACCACAAGGACCTCGACTTCCTGCAGGACCCCAAGCTC
TTTGATCCCGAGCGGCCCGTTCGCCCACACAAGTACTAGAAGCTTTCTAG
ACC
BS17172.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:04:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9688-PA | 423 | mRpS18C-RA | 1..423 | 17..439 | 2115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:35:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS18C-RA | 528 | CG9688-RA | 38..461 | 16..439 | 2120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:35:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30424100..30424489 | 50..439 | 1950 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:35:12 has no hits.
BS17172.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:04:49 Download gff for
BS17172.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9688-PA | 1..423 | 17..439 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:44:16 Download gff for
BS17172.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS18C-RA | 38..467 | 16..448 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:36:56 Download gff for
BS17172.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS18C-RA | 38..467 | 16..448 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:36:56 Download gff for
BS17172.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30424011..30424045 | 16..50 | 100 | -> | Plus |
3R | 30424101..30424495 | 51..448 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:44:16 Download gff for
BS17172.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26249733..26249767 | 16..50 | 100 | -> | Plus |
arm_3R | 26249823..26250217 | 51..448 | 98 | | Plus |
BS17172.complete Sequence
455 bp assembled on 2007-05-08
GenBank Submission: FJ638264
> BS17172.complete
GAAGTTATCAGTCGACATGTTGAAATTAGGAAAGTTTCTGGCACAAAATG
CCACGTTGGTCAATCTGGTGGGCAGACAGCAGCTGGGAACCGTCAGCCGC
CTCTATTCAGCTGCCCCGGAGTCGTCCGACTTGGATCTGCCGATCGACAT
AAAGAATCCCTATGAAAAGGACCCCCAGCAGTGCATCCTATGCAAGCACA
GCATCGAGCCGCACTACAAGAACGTGAAGCTGCTCTCCCAATTCCAATCG
CCATACACGGGTCGCATTTACGGGCGTCACATCACCGGATTATGCAAGCG
CCGGCAGGAGCAAGTGGAGCAGGCCATTCTGCGTGCCCAGCAGTGCCTGC
TGATGCCGGGATACCACAAGGACCTCGACTTCCTGCAGGACCCCAAGCTC
TTTGATCCCGAGCGGCCCGTTCGCCCACACAAGTACTAGAAGCTTTCTAG
ACCAT
BS17172.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:06:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS18C-RA | 423 | CG9688-PA | 1..423 | 17..439 | 2115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS18C-RA | 528 | CG9688-RA | 38..461 | 16..439 | 2120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30424100..30424489 | 50..439 | 1950 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:06:11 has no hits.
BS17172.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:44:16 Download gff for
BS17172.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS18C-RA | 1..423 | 17..439 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:11:01 Download gff for
BS17172.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS18C-RA | 1..423 | 17..439 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:23 Download gff for
BS17172.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS18C-RA | 44..461 | 22..439 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:44:16 Download gff for
BS17172.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS18C-RA | 1..423 | 17..439 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:10:35 Download gff for
BS17172.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS18C-RA | 44..461 | 22..439 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:10:35 Download gff for
BS17172.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30424017..30424045 | 22..50 | 100 | -> | Plus |
3R | 30424101..30424489 | 51..439 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:23 Download gff for
BS17172.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26249739..26249767 | 22..50 | 100 | -> | Plus |
arm_3R | 26249823..26250211 | 51..439 | 100 | | Plus |
BS17172.pep Sequence
Translation from 16 to 438
> BS17172.pep
MLKLGKFLAQNATLVNLVGRQQLGTVSRLYSAAPESSDLDLPIDIKNPYE
KDPQQCILCKHSIEPHYKNVKLLSQFQSPYTGRIYGRHITGLCKRRQEQV
EQAILRAQQCLLMPGYHKDLDFLQDPKLFDPERPVRPHKY*
BS17172.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:36:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS18C-PA | 140 | CG9688-PA | 1..140 | 1..140 | 745 | 100 | Plus |