Clone BS17172 Report

Search the DGRC for BS17172

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:171
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptmRpS18C-RA
Protein status:BS17172.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS17172.3prime Sequence

453 bp (453 high quality bases) assembled on 2007-05-15

> BS17172.3prime
ATGGTCTAGAAAGCTTCTAGTACTTGTGTGGGCGAACGGGCCGCTCGGGA
TCAAAGAGCTTGGGGTCCTGCAGGAAGTCGAGGTCCTTGTGGTATCCCGG
CATCAGCAGGCACTGCTGGGCACGCAGAATGGCCTGCTCCACTTGCTCCT
GCCGGCGCTTGCATAATCCGGTGATGTGACGCCCGTAAATGCGACCCGTG
TATGGCGATTGGAATTGGGAGAGCAGCTTCACGTTCTTGTAGTGCGGCTC
GATGCTGTGCTTGCATAGGATGCACTGCTGGGGGTCCTTTTCATAGGGAT
TCTTTATGTCGATCGGCAGATCCAAGTCGGACGACTCCGGGGCAGCTGAA
TAGAGGCGGCTGACGGTTCCCAGCTGCTGTCTGCCCACCAGATTGACCAA
CGTGGCATTTTGTGCCAGAAACTTTCCTAATTTCAACATGTCGACTGATA
ACT

BS17172.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:09:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG9688-PA 423 mRpS18C-RA 1..423 439..17 2115 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:04:10
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS18C-RA 528 CG9688-RA 38..461 440..17 2120 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:04:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30424100..30424489 406..17 1950 100 Minus
Blast to na_te.dros performed on 2015-02-04 21:04:08 has no hits.

BS17172.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:09:02 Download gff for BS17172.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9688-PA 1..423 17..439 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:38:42 Download gff for BS17172.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS18C-RA 38..467 8..440 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:38:52 Download gff for BS17172.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS18C-RA 38..467 8..440 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:38:52 Download gff for BS17172.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30424011..30424045 406..440 100 -> Minus
3R 30424101..30424495 8..405 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:38:42 Download gff for BS17172.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26249733..26249767 406..440 100 -> Minus
arm_3R 26249823..26250217 8..405 98   Minus

BS17172.5prime Sequence

453 bp (453 high quality bases) assembled on 2007-05-15

> BS17172.5prime
GAAGTTATCAGTCGACATGTTGAAATTAGGAAAGTTTCTGGCACAAAATG
CCACGTTGGTCAATCTGGTGGGCAGACAGCAGCTGGGAACCGTCAGCCGC
CTCTATTCAGCTGCCCCGGAGTCGTCCGACTTGGATCTGCCGATCGACAT
AAAGAATCCCTATGAAAAGGACCCCCAGCAGTGCATCCTATGCAAGCACA
GCATCGAGCCGCACTACAAGAACGTGAAGCTGCTCTCCCAATTCCAATCG
CCATACACGGGTCGCATTTACGGGCGTCACATCACCGGATTATGCAAGCG
CCGGCAGGAGCAAGTGGAGCAGGCCATTCTGCGTGCCCAGCAGTGCCTGC
TGATGCCGGGATACCACAAGGACCTCGACTTCCTGCAGGACCCCAAGCTC
TTTGATCCCGAGCGGCCCGTTCGCCCACACAAGTACTAGAAGCTTTCTAG
ACC

BS17172.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:04:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG9688-PA 423 mRpS18C-RA 1..423 17..439 2115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:35:14
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS18C-RA 528 CG9688-RA 38..461 16..439 2120 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:35:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30424100..30424489 50..439 1950 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:35:12 has no hits.

BS17172.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:04:49 Download gff for BS17172.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9688-PA 1..423 17..439 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:44:16 Download gff for BS17172.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS18C-RA 38..467 16..448 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:36:56 Download gff for BS17172.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS18C-RA 38..467 16..448 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:36:56 Download gff for BS17172.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30424011..30424045 16..50 100 -> Plus
3R 30424101..30424495 51..448 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:44:16 Download gff for BS17172.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26249733..26249767 16..50 100 -> Plus
arm_3R 26249823..26250217 51..448 98   Plus

BS17172.complete Sequence

455 bp assembled on 2007-05-08

GenBank Submission: FJ638264

> BS17172.complete
GAAGTTATCAGTCGACATGTTGAAATTAGGAAAGTTTCTGGCACAAAATG
CCACGTTGGTCAATCTGGTGGGCAGACAGCAGCTGGGAACCGTCAGCCGC
CTCTATTCAGCTGCCCCGGAGTCGTCCGACTTGGATCTGCCGATCGACAT
AAAGAATCCCTATGAAAAGGACCCCCAGCAGTGCATCCTATGCAAGCACA
GCATCGAGCCGCACTACAAGAACGTGAAGCTGCTCTCCCAATTCCAATCG
CCATACACGGGTCGCATTTACGGGCGTCACATCACCGGATTATGCAAGCG
CCGGCAGGAGCAAGTGGAGCAGGCCATTCTGCGTGCCCAGCAGTGCCTGC
TGATGCCGGGATACCACAAGGACCTCGACTTCCTGCAGGACCCCAAGCTC
TTTGATCCCGAGCGGCCCGTTCGCCCACACAAGTACTAGAAGCTTTCTAG
ACCAT

BS17172.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:06:12
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS18C-RA 423 CG9688-PA 1..423 17..439 2115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:12
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS18C-RA 528 CG9688-RA 38..461 16..439 2120 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30424100..30424489 50..439 1950 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:06:11 has no hits.

BS17172.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:44:16 Download gff for BS17172.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS18C-RA 1..423 17..439 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:11:01 Download gff for BS17172.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS18C-RA 1..423 17..439 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:23 Download gff for BS17172.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS18C-RA 44..461 22..439 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:44:16 Download gff for BS17172.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS18C-RA 1..423 17..439 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:10:35 Download gff for BS17172.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS18C-RA 44..461 22..439 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:10:35 Download gff for BS17172.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30424017..30424045 22..50 100 -> Plus
3R 30424101..30424489 51..439 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:23 Download gff for BS17172.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26249739..26249767 22..50 100 -> Plus
arm_3R 26249823..26250211 51..439 100   Plus

BS17172.pep Sequence

Translation from 16 to 438

> BS17172.pep
MLKLGKFLAQNATLVNLVGRQQLGTVSRLYSAAPESSDLDLPIDIKNPYE
KDPQQCILCKHSIEPHYKNVKLLSQFQSPYTGRIYGRHITGLCKRRQEQV
EQAILRAQQCLLMPGYHKDLDFLQDPKLFDPERPVRPHKY*

BS17172.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:36:35
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS18C-PA 140 CG9688-PA 1..140 1..140 745 100 Plus