Clone Sequence Records
BS17173.complete Sequence
2189 bp assembled on 2009-12-07
GenBank Submission: KX802853
> BS17173.complete
GAAGTTATCAGTCGACATGGCGGAATCTGACTCCGGAGAAAGTACGTCGT
CGGTGTCCTCGTTTATATCCTCATCGTCGTCTTCGCGATTAAGTGAGTTT
GTGGACGCAAAGACAGAACTGCAGGATATATATCACGATTTGAGTAATTA
CCTGTCCAATTTCCTAACCATTTTGGAGGAGACTGTCCTGTTAAAAGATC
GACAAATGCTGGAGCACCTGTGCGCCTTCTCCAGCAGGGTGGAGGCCATT
GCAAAGGTTCTTTCACGTGATCGAATGAAGGTGGCATTTTTTGGACGCAC
CTCAAATGGAAAAAGTGCCGTGATCAATGCACTTCTGCATGAAAAAATCC
TGCCCAGCGCCATGGGCCATACCACCAGCTGTTTTTGTCAAGTGCAAGCT
AATGGCTCGAATGAAACCGAGCACGTAAAGGTCGAGCAGGAGGATGAGCA
TATGGAACTGAGTGCCCTAAGCCAACTGGCCAGTGCACATTCTCCTGGGG
CCCTAAAACCCTCAACTCTGCTGCAGGTCAATATGGCCAAGAACCGTTGC
TCGATATTGGATTACGATGTGGTTTTGATGGATACACCTGGAGTGGATGT
AACAGCGCAACTGGACGATTGCCTAGATAGCTACTGCATGGATGCGGATG
TTTTCATTCTAGTTCTCAACGCCGAGTCCACTGTTTCGCGCGTGGAAAGG
CAGTTCTTCAAGGACGTGGCATCCAAACTCTCGCGTCCAAATCTCTTTAT
ACTCAACAATCGATGGGATAAGGCCAGCAGTCTGGAGCCGGAAATGGAGC
AGAAGGTAAAGGATCAGCATATGGAACGTTGCGTTAACCTGCTCGTGGAT
GAATTAGGTGTTTATTCAACTGCACAGGAAGCGTGGGAAAGGATCTATCA
TGTTTCAGCACTGGAGGCATTGCATATAAGGAATGGTCAGATTACGAATC
CCTCGGGACAAACCCAACAGCGATATCAGGAGTTTCTGCGTTTCGAAAAT
GATTTTTCGAATTGCCTCGCGGTGTCAGCGTTAAAAACCAAATTTGGTCC
ACACTTGCTAAGTGCGCAGAAGATTTTAAACCAGTTAAAATCAACTCTGA
TATGCCCTTTCATAGAGAAAGTAAGTCGTCTTATCGATGAGAATAAGGAG
AGAAGAGCTAACTTGAATGCCGAAATAGAGGACTGGTTAATACTAATGCA
AGAGGATAGAGAAGCGCTTCAATATTGTTTCGAAGAACTGACTGAAATGA
CACAAAGAGTAGGTCGGTGCGTTTTGAACGACCAGATAAAAACGTTAATA
CCCTCGTCTGTGCTATCATTCTCGCAACCATTTCACCCGGAATTCCCAGC
ACAAATAGGCCAGTACCAACGCTCGTTATGTGCCCATTTGGATAAACTTC
TTGAAGATCGTGTCCTTCAATGTCTCTCCATACCCCTACAAAGAAAAATA
TTAGATATAGAGAAAGAAATTGGGCTTCCGATCGCCGAGAACTCTTGCGA
TTGGCAACTAATCTACGGCCTGGATTGCCAATCCTATATGAGTGACTTTC
AGCCAGATCTTAGGTTTCGATTTTCTTTGGGTTTTACTGCCCTGTGGCAT
CGTCTTGAAGGCAACCTACCGTTGCACGCAAGTCCATTTCGAATTCAAAA
GTTACAAAATGGTCACAAGAAATGTTCGCCCCTGCCACCTTTAGTTAACG
GAAACCATTGGCAGATGCTGGAATCTTTGGTGAAGTCTAAAGGTAGCTTG
GGCACCGTTTTACTGAGCGCCATGGCCATCCGTTCGTTCAACTGGCCAAT
TGTATTGATCCTTGGTGGGCTCGTCGGATCCTTTTACATCTACGAGTACG
CCGCTTGGACAACTGCCGCCCAAGAGCGAAGTTTCAAGAGCCAGTACGCC
AGGCTCTTGCAACAACGTCTGCGGTCGGATGTGCAGCAAACTGTTAGCGG
TTTTGAGCTCCAGTTGCGACAGCACCTGGCAACGGTCCGAAATTGCTGGG
AAGCCCAGTCCAATGAGACACTGAATGACCTGAACGTAAGGACCGCGGAG
CTGACCAAACAAATACAATCGATGGAGGTGTTGCAGCTCAGCCTGAAGAA
GTTTCGGGACAAGGGACAGCTGCTGGCCAGTCGGTTGGGAGACTTTCAAG
AGACCTACTTGACCAAGAGCTGAAAGCTTTCTAGACCAT
BS17173.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:37:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fzo-RA | 2157 | CG4568-PA | 1..2157 | 17..2173 | 10785 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:37:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fzo-RA | 2391 | CG4568-RA | 74..2230 | 17..2173 | 10785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:37:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23201805..23203961 | 2173..17 | 10785 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:37:29 has no hits.
BS17173.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:32 Download gff for
BS17173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fzo-RA | 74..2229 | 17..2172 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:19:37 Download gff for
BS17173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fzo-RA | 74..2229 | 17..2172 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:16:30 Download gff for
BS17173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fzo-RA | 74..2229 | 17..2172 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:26:41 Download gff for
BS17173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fzo-RA | 74..2229 | 17..2172 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:26:41 Download gff for
BS17173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23201806..23203961 | 17..2172 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:19:37 Download gff for
BS17173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19027528..19029683 | 17..2172 | 100 | | Minus |
BS17173.3prime Sequence
792 bp (770 high quality bases) assembled on 2007-05-15
> BS17173.3prime
ATGGTCTAGAAAGCTTTCAGCTCTTGGTCAAGTAGGTCTCTTGAAAGTCT
CCCAACCGACTGGCCAGCAGCTGTCCCTTGTCCCGAAACTTCTTCAGGCT
GAGCTGCAACACCTCCATCGATTGTATTTGTTTGGTCAGCTCCGCGGTCC
TTACGTTCAGGTCATTCAGTGTCTCATTGGACTGGGCTTCCCAGCAATTT
CGGACCGTTGCCAGGTGCTGTCGCAACTGGAGCTCAAAACCGCTAACAGT
TTGCTGCACATCCGACCGCAGACGTTGTTGCAAGAGCCTGGCGTACTGGC
TCTTGAAACTTCGCTCTTGGGCGGCAGTTGTCCAAGCGGCGTACTCGTAG
ATGTAAAAGGATCCGACGAGCCCACCAAGGATCAATACAATTGGCCAGTT
GAACGAACGGATGGCCATGGCGCTCAGTAAAACGGTGCCCAAGCTACCTT
TAGACTTCACCAAAGATTCCAGCATCTGCCAATGGTTTCCGTTAACTAAA
GGTGGCAGGGGCGAACATTTCTTGTGACCATTTTGTAACTTTTGAATTCG
AAATGGACTTGCGTGCAACGGTAGGTTGCCTTCAAGACGATGCCACAGGG
CAGTAAAACCCAAAGAAAATCGAAACCTAAGATCTGGCTGAAAGTCACTC
ATATAGGATTGGCAATCCAGGCCGTAGATTAGTTGCCAATCGCAAGAGTT
CTCGGCGATCGGAAGCCCAATTTCTTTCTCTATATCTAATATTTTTCTTT
GTAGGGGTATGGAGAGACATTGAAGGACACGATCTTCAAGAA
BS17173.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:06:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4568-PA | 2157 | fzo-RA | 1382..2157 | 792..17 | 3880 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:08:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fzo-RA | 2391 | CG4568-RA | 1455..2230 | 792..17 | 3880 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:08:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23201805..23202580 | 17..792 | 3880 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:08:04 has no hits.
BS17173.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:06:59 Download gff for
BS17173.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4568-PA | 1384..2157 | 17..790 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:53:11 Download gff for
BS17173.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fzo-RA | 1455..2235 | 11..792 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:06:33 Download gff for
BS17173.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fzo-RA | 1455..2235 | 11..792 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:06:33 Download gff for
BS17173.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23201800..23202580 | 11..792 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:53:11 Download gff for
BS17173.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19027522..19028302 | 11..792 | 99 | | Plus |
BS17173.5prime Sequence
751 bp (750 high quality bases) assembled on 2007-05-15
> BS17173.5prime
GAAGTTATCAGTCGACATGGCGGAATCTGACTCCGGAGAAAGTACGTCGT
CGGTGTCCTCGTTTATATCCTCATCGTCGTCTTCGCGATTAAGTGAGTTT
GTGGACGCAAAGACAGAACTGCAGGATATATATCACGATTTGAGTAATTA
CCTGTCCAATTTCCTAACCATTTTGGAGGAGACTGTCCTGTTAAAAGATC
GACAAATGCTGGAGCACCTGTGCGCCTTCTCCAGCAGGGTGGAGGCCATT
GCAAAGGTTCTTTCACGTGATCGAATGAAGGTGGCATTTTTTGGACGCAC
CTCAAATGGAAAAAGTGCCGTGATCAATGCACTTCTGCATGAAAAAATCC
TGCCCAGCGCCATGGGCCATACCACCAGCTGTTTTTGTCAAGTGCAAGCT
AATGGCTCGAATGAAACCGAGCACGTAAAGGTCGAGCAGGAGGATGAGCA
TATGGAACTGAGTGCCCTAAGCCAACTGGCCAGTGCACATTCTCCTGGGG
CCCTAAAACCCTCAACTCTGCTGCAGGTCAATATGGCCAAGAACCGTTGC
TCGATATTGGATTACGATGTGGTTTTGATGGATACACCTGGAGTGGATGT
AACAGCGCAACTGGACGATTGCCTAGATAGCTACTGCATGGATGCGGATG
TTTTCATTCTAGTTCTCAACGCCGAGTCCACTGTTTCGCGCGTGGAAAGG
CAGTTCTTCAAGGACGTGGCATCCAAACTCTCGCGTCCAAATCTCTTTAT
A
BS17173.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:02:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4568-PA | 2157 | fzo-RA | 1..735 | 17..751 | 3675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:56:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fzo-RA | 2391 | CG4568-RA | 74..808 | 17..751 | 3675 | 100 | Plus |
| Marf-RD | 3617 | CG3869-RD | 920..1039 | 275..394 | 180 | 76.7 | Plus |
| Marf-RC | 3605 | CG3869-RC | 920..1039 | 275..394 | 180 | 76.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:56:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23203227..23203961 | 751..17 | 3675 | 100 | Minus |
| X | 23542271 | X | 6367463..6367582 | 275..394 | 180 | 76.7 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:56:51 has no hits.
BS17173.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:02:47 Download gff for
BS17173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4568-PA | 1..734 | 17..750 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:24:51 Download gff for
BS17173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fzo-RA | 68..807 | 7..750 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:23:08 Download gff for
BS17173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fzo-RA | 68..807 | 7..750 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:23:08 Download gff for
BS17173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23203228..23203967 | 7..750 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:24:51 Download gff for
BS17173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19028950..19029689 | 7..750 | 99 | | Minus |
BS17173.pep Sequence
Translation from 16 to 2172
> BS17173.pep
MAESDSGESTSSVSSFISSSSSSRLSEFVDAKTELQDIYHDLSNYLSNFL
TILEETVLLKDRQMLEHLCAFSSRVEAIAKVLSRDRMKVAFFGRTSNGKS
AVINALLHEKILPSAMGHTTSCFCQVQANGSNETEHVKVEQEDEHMELSA
LSQLASAHSPGALKPSTLLQVNMAKNRCSILDYDVVLMDTPGVDVTAQLD
DCLDSYCMDADVFILVLNAESTVSRVERQFFKDVASKLSRPNLFILNNRW
DKASSLEPEMEQKVKDQHMERCVNLLVDELGVYSTAQEAWERIYHVSALE
ALHIRNGQITNPSGQTQQRYQEFLRFENDFSNCLAVSALKTKFGPHLLSA
QKILNQLKSTLICPFIEKVSRLIDENKERRANLNAEIEDWLILMQEDREA
LQYCFEELTEMTQRVGRCVLNDQIKTLIPSSVLSFSQPFHPEFPAQIGQY
QRSLCAHLDKLLEDRVLQCLSIPLQRKILDIEKEIGLPIAENSCDWQLIY
GLDCQSYMSDFQPDLRFRFSLGFTALWHRLEGNLPLHASPFRIQKLQNGH
KKCSPLPPLVNGNHWQMLESLVKSKGSLGTVLLSAMAIRSFNWPIVLILG
GLVGSFYIYEYAAWTTAAQERSFKSQYARLLQQRLRSDVQQTVSGFELQL
RQHLATVRNCWEAQSNETLNDLNVRTAELTKQIQSMEVLQLSLKKFRDKG
QLLASRLGDFQETYLTKS*
BS17173.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:39:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fzo-PA | 718 | CG4568-PA | 1..718 | 1..718 | 3680 | 100 | Plus |
| Marf-PC | 810 | CG3869-PC | 62..808 | 14..716 | 1024 | 34.7 | Plus |
| Marf-PB | 810 | CG3869-PB | 62..808 | 14..716 | 1024 | 34.7 | Plus |
| Marf-PD | 814 | CG3869-PD | 62..812 | 14..716 | 1014 | 34.6 | Plus |
