Clone BS17174 Report

Search the DGRC for BS17174

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:171
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptEh-RA
Protein status:BS17174.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS17174.3prime Sequence

324 bp (324 high quality bases) assembled on 2007-05-15

> BS17174.3prime
ATGGTCTAGAAAGCTTTCACTCGAGCGCATTCAGAAACGGGGCTATGGAG
GCTATATCCTCGCAGTCCGGGATGGCTTTGCCCTTGAACTTGAGGCAGGA
AAGGGCACAGGTCTGCCCCTGGAAGTAATCTCCCAGCATGGTCTTGCACT
GGACGCAGTTGTTAAGGCACACCTGAACAAAATCAATGCCACCCATGGAG
TCAAATCTCTTGTGCGTATAATGACTTATGGCGGGCAATGCATTTCCAAA
ATGCACCAGGCACATTGCAACTGCCACAAAGGTGCACAAAATCAAGGGCT
TGCAGTTCATGTCGACTGATAACT

BS17174.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:07:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG5400-PA 294 Eh-RA 1..294 310..17 1470 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:05:36
Subject Length Description Subject Range Query Range Score Percent Strand
Eh-RB 700 CG5400-RB 159..454 311..16 1480 100 Minus
Eh-RA 704 CG5400-RA 163..458 311..16 1480 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:05:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17446888..17447054 16..182 805 98.8 Plus
3R 32079331 3R 17447351..17447460 202..311 550 100 Plus
Blast to na_te.dros performed on 2015-02-12 16:05:35 has no hits.

BS17174.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:07:07 Download gff for BS17174.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5400-PA 1..294 17..310 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:20:42 Download gff for BS17174.3prime
Subject Subject Range Query Range Percent Splice Strand
Eh-RA 154..460 13..321 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:40:51 Download gff for BS17174.3prime
Subject Subject Range Query Range Percent Splice Strand
Eh-RA 154..460 13..321 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:40:51 Download gff for BS17174.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17446886..17447044 13..172 99 <- Plus
3R 17447246..17447274 173..201 100 <- Plus
3R 17447351..17447469 202..321 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:20:42 Download gff for BS17174.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13272608..13272766 13..172 99 <- Plus
arm_3R 13272968..13272996 173..201 100 <- Plus
arm_3R 13273073..13273191 202..321 96   Plus

BS17174.5prime Sequence

324 bp (324 high quality bases) assembled on 2007-05-15

> BS17174.5prime
GAAGTTATCAGTCGACATGAACTGCAAGCCCTTGATTTTGTGCACCTTTG
TGGCAGTTGCAATGTGCCTGGTGCATTTTGGAAATGCATTGCCCGCCATA
AGTCATTATACGCACAAGAGATTTGACTCCATGGGTGGCATTGATTTTGT
TCAGGTGTGCCTTAACAACTGCGTCCAGTGCAAGACCATGCTGGGAGATT
ACTTCCAGGGGCAGACCTGTGCCCTTTCCTGCCTCAAGTTCAAGGGCAAA
GCCATCCCGGACTGCGAGGATATAGCCTCCATAGCCCCGTTTCTGAATGC
GCTCGAGTGAAAGCTTTCTAGACC

BS17174.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:02:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG5400-PA 294 Eh-RA 1..294 17..310 1470 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:56:00
Subject Length Description Subject Range Query Range Score Percent Strand
Eh-RB 700 CG5400-RB 159..454 16..311 1480 100 Plus
Eh-RA 704 CG5400-RA 163..458 16..311 1480 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:55:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17446888..17447054 311..145 805 98.8 Minus
3R 32079331 3R 17447351..17447460 125..16 550 100 Minus
Blast to na_te.dros performed on 2015-02-12 15:56:00 has no hits.

BS17174.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:02:55 Download gff for BS17174.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5400-PA 1..294 17..310 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:19:45 Download gff for BS17174.5prime
Subject Subject Range Query Range Percent Splice Strand
Eh-RA 154..460 6..314 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:27:22 Download gff for BS17174.5prime
Subject Subject Range Query Range Percent Splice Strand
Eh-RA 154..460 6..314 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:27:22 Download gff for BS17174.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17446886..17447044 155..314 99 <- Minus
3R 17447246..17447274 126..154 100 <- Minus
3R 17447351..17447469 6..125 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:19:45 Download gff for BS17174.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13272608..13272766 155..314 99 <- Minus
arm_3R 13272968..13272996 126..154 100 <- Minus
arm_3R 13273073..13273191 6..125 96   Minus

BS17174.complete Sequence

326 bp assembled on 2007-05-08

GenBank Submission: FJ638265

> BS17174.complete
GAAGTTATCAGTCGACATGAACTGCAAGCCCTTGATTTTGTGCACCTTTG
TGGCAGTTGCAATGTGCCTGGTGCATTTTGGAAATGCATTGCCCGCCATA
AGTCATTATACGCACAAGAGATTTGACTCCATGGGTGGCATTGATTTTGT
TCAGGTGTGCCTTAACAACTGCGTCCAGTGCAAGACCATGCTGGGAGATT
ACTTCCAGGGGCAGACCTGTGCCCTTTCCTGCCTCAAGTTCAAGGGCAAA
GCCATCCCGGACTGCGAGGATATAGCCTCCATAGCCCCGTTTCTGAATGC
GCTCGAGTGAAAGCTTTCTAGACCAT

BS17174.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:27:26
Subject Length Description Subject Range Query Range Score Percent Strand
Eh-RB 294 CG5400-PB 1..294 17..310 1470 100 Plus
Eh-RA 294 CG5400-PA 1..294 17..310 1470 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:27:27
Subject Length Description Subject Range Query Range Score Percent Strand
Eh-RB 700 CG5400-RB 159..454 16..311 1480 100 Plus
Eh-RA 704 CG5400-RA 163..458 16..311 1480 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:27:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17446888..17447054 311..145 805 98.8 Minus
3R 32079331 3R 17447351..17447460 125..16 550 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:27:25 has no hits.

BS17174.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:21 Download gff for BS17174.complete
Subject Subject Range Query Range Percent Splice Strand
Eh-RA 1..294 17..310 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:14:19 Download gff for BS17174.complete
Subject Subject Range Query Range Percent Splice Strand
Eh-RA 824..1130 6..314 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:11:53 Download gff for BS17174.complete
Subject Subject Range Query Range Percent Splice Strand
Eh-RA 164..456 17..309 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:21 Download gff for BS17174.complete
Subject Subject Range Query Range Percent Splice Strand
Eh-RA 824..1130 6..314 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:22:20 Download gff for BS17174.complete
Subject Subject Range Query Range Percent Splice Strand
Eh-RA 164..456 17..309 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:22:20 Download gff for BS17174.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17446890..17447044 155..309 100 <- Minus
3R 17447246..17447274 126..154 100 <- Minus
3R 17447351..17447459 17..125 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:11:53 Download gff for BS17174.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13272612..13272766 155..309 100 <- Minus
arm_3R 13272968..13272996 126..154 100 <- Minus
arm_3R 13273073..13273181 17..125 100   Minus

BS17174.pep Sequence

Translation from 16 to 309

> BS17174.pep
MNCKPLILCTFVAVAMCLVHFGNALPAISHYTHKRFDSMGGIDFVQVCLN
NCVQCKTMLGDYFQGQTCALSCLKFKGKAIPDCEDIASIAPFLNALE*

BS17174.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:31:41
Subject Length Description Subject Range Query Range Score Percent Strand
Eh-PB 97 CG5400-PB 1..97 1..97 530 100 Plus
Eh-PA 97 CG5400-PA 1..97 1..97 530 100 Plus