Clone Sequence Records
BS17174.3prime Sequence
324 bp (324 high quality bases) assembled on 2007-05-15
> BS17174.3prime
ATGGTCTAGAAAGCTTTCACTCGAGCGCATTCAGAAACGGGGCTATGGAG
GCTATATCCTCGCAGTCCGGGATGGCTTTGCCCTTGAACTTGAGGCAGGA
AAGGGCACAGGTCTGCCCCTGGAAGTAATCTCCCAGCATGGTCTTGCACT
GGACGCAGTTGTTAAGGCACACCTGAACAAAATCAATGCCACCCATGGAG
TCAAATCTCTTGTGCGTATAATGACTTATGGCGGGCAATGCATTTCCAAA
ATGCACCAGGCACATTGCAACTGCCACAAAGGTGCACAAAATCAAGGGCT
TGCAGTTCATGTCGACTGATAACT
BS17174.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:07:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5400-PA | 294 | Eh-RA | 1..294 | 310..17 | 1470 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:05:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Eh-RB | 700 | CG5400-RB | 159..454 | 311..16 | 1480 | 100 | Minus |
Eh-RA | 704 | CG5400-RA | 163..458 | 311..16 | 1480 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:05:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17446888..17447054 | 16..182 | 805 | 98.8 | Plus |
3R | 32079331 | 3R | 17447351..17447460 | 202..311 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:05:35 has no hits.
BS17174.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:07:07 Download gff for
BS17174.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5400-PA | 1..294 | 17..310 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:20:42 Download gff for
BS17174.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eh-RA | 154..460 | 13..321 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:40:51 Download gff for
BS17174.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eh-RA | 154..460 | 13..321 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:40:51 Download gff for
BS17174.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17446886..17447044 | 13..172 | 99 | <- | Plus |
3R | 17447246..17447274 | 173..201 | 100 | <- | Plus |
3R | 17447351..17447469 | 202..321 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:20:42 Download gff for
BS17174.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13272608..13272766 | 13..172 | 99 | <- | Plus |
arm_3R | 13272968..13272996 | 173..201 | 100 | <- | Plus |
arm_3R | 13273073..13273191 | 202..321 | 96 | | Plus |
BS17174.5prime Sequence
324 bp (324 high quality bases) assembled on 2007-05-15
> BS17174.5prime
GAAGTTATCAGTCGACATGAACTGCAAGCCCTTGATTTTGTGCACCTTTG
TGGCAGTTGCAATGTGCCTGGTGCATTTTGGAAATGCATTGCCCGCCATA
AGTCATTATACGCACAAGAGATTTGACTCCATGGGTGGCATTGATTTTGT
TCAGGTGTGCCTTAACAACTGCGTCCAGTGCAAGACCATGCTGGGAGATT
ACTTCCAGGGGCAGACCTGTGCCCTTTCCTGCCTCAAGTTCAAGGGCAAA
GCCATCCCGGACTGCGAGGATATAGCCTCCATAGCCCCGTTTCTGAATGC
GCTCGAGTGAAAGCTTTCTAGACC
BS17174.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:02:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5400-PA | 294 | Eh-RA | 1..294 | 17..310 | 1470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:56:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Eh-RB | 700 | CG5400-RB | 159..454 | 16..311 | 1480 | 100 | Plus |
Eh-RA | 704 | CG5400-RA | 163..458 | 16..311 | 1480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:55:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17446888..17447054 | 311..145 | 805 | 98.8 | Minus |
3R | 32079331 | 3R | 17447351..17447460 | 125..16 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 15:56:00 has no hits.
BS17174.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:02:55 Download gff for
BS17174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5400-PA | 1..294 | 17..310 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:19:45 Download gff for
BS17174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eh-RA | 154..460 | 6..314 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:27:22 Download gff for
BS17174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eh-RA | 154..460 | 6..314 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:27:22 Download gff for
BS17174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17446886..17447044 | 155..314 | 99 | <- | Minus |
3R | 17447246..17447274 | 126..154 | 100 | <- | Minus |
3R | 17447351..17447469 | 6..125 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:19:45 Download gff for
BS17174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13272608..13272766 | 155..314 | 99 | <- | Minus |
arm_3R | 13272968..13272996 | 126..154 | 100 | <- | Minus |
arm_3R | 13273073..13273191 | 6..125 | 96 | | Minus |
BS17174.complete Sequence
326 bp assembled on 2007-05-08
GenBank Submission: FJ638265
> BS17174.complete
GAAGTTATCAGTCGACATGAACTGCAAGCCCTTGATTTTGTGCACCTTTG
TGGCAGTTGCAATGTGCCTGGTGCATTTTGGAAATGCATTGCCCGCCATA
AGTCATTATACGCACAAGAGATTTGACTCCATGGGTGGCATTGATTTTGT
TCAGGTGTGCCTTAACAACTGCGTCCAGTGCAAGACCATGCTGGGAGATT
ACTTCCAGGGGCAGACCTGTGCCCTTTCCTGCCTCAAGTTCAAGGGCAAA
GCCATCCCGGACTGCGAGGATATAGCCTCCATAGCCCCGTTTCTGAATGC
GCTCGAGTGAAAGCTTTCTAGACCAT
BS17174.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:27:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Eh-RB | 294 | CG5400-PB | 1..294 | 17..310 | 1470 | 100 | Plus |
Eh-RA | 294 | CG5400-PA | 1..294 | 17..310 | 1470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:27:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Eh-RB | 700 | CG5400-RB | 159..454 | 16..311 | 1480 | 100 | Plus |
Eh-RA | 704 | CG5400-RA | 163..458 | 16..311 | 1480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:27:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17446888..17447054 | 311..145 | 805 | 98.8 | Minus |
3R | 32079331 | 3R | 17447351..17447460 | 125..16 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:27:25 has no hits.
BS17174.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:21 Download gff for
BS17174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eh-RA | 1..294 | 17..310 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:14:19 Download gff for
BS17174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eh-RA | 824..1130 | 6..314 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:11:53 Download gff for
BS17174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eh-RA | 164..456 | 17..309 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:21 Download gff for
BS17174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eh-RA | 824..1130 | 6..314 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:22:20 Download gff for
BS17174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eh-RA | 164..456 | 17..309 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:22:20 Download gff for
BS17174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17446890..17447044 | 155..309 | 100 | <- | Minus |
3R | 17447246..17447274 | 126..154 | 100 | <- | Minus |
3R | 17447351..17447459 | 17..125 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:11:53 Download gff for
BS17174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13272612..13272766 | 155..309 | 100 | <- | Minus |
arm_3R | 13272968..13272996 | 126..154 | 100 | <- | Minus |
arm_3R | 13273073..13273181 | 17..125 | 100 | | Minus |
BS17174.pep Sequence
Translation from 16 to 309
> BS17174.pep
MNCKPLILCTFVAVAMCLVHFGNALPAISHYTHKRFDSMGGIDFVQVCLN
NCVQCKTMLGDYFQGQTCALSCLKFKGKAIPDCEDIASIAPFLNALE*
BS17174.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:31:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Eh-PB | 97 | CG5400-PB | 1..97 | 1..97 | 530 | 100 | Plus |
Eh-PA | 97 | CG5400-PA | 1..97 | 1..97 | 530 | 100 | Plus |