Clone Sequence Records
BS17183.3prime Sequence
585 bp (585 high quality bases) assembled on 2007-05-15
> BS17183.3prime
ATGGTCTAGAAAGCTTCTAACCGTCAAAACCCTTGGAAAATTTTATGTTG
TTCTGGTCGCAGAAGTTCTTCAGATCCATGAAATTGCTATAGGGAATGTT
ATCCTTGGCACTCTGCCTTTTGTTAAAATGCTTTTCATCTTCGACTATAT
GATGGAAGTCCTGGTTCAGTTTGTGACCCTTGCAGATGGTGAACTCGGCC
TCGTCAAAAAGCTTTCGTCTCATCTCAAACGTTGGTTCGGTTGTAGTATT
GGATGCCACTTGTGGTTCTGAGGACGCCTTTCTTTCGGAGATGACAATCG
ATAAGTCGCTTAATTCAGATCGGAGCAGACTATCCGTCTCCAACTTGGCC
GTTAGTGCCGCCGTATCTAATTTCTTTTGTTTTTGCGGAAATGGCGTTCC
AGAACCCTTGGAACTTTTCAATCCATAATCGCGATTGGTGGTCGTGCGAT
CGTCATACTCGCTGGGGTTCCTATAAAAACCAAGGTGAATGGGAAATCCC
TTAGCCGCGGTTTTGGCCTTCTTCATATTGGATGGGTTAGTGTTTTGCAG
ACTTTTGAAGTTCTTATGCATGTCGACTGATAACT
BS17183.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:09:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14719-PA | 555 | I-t-RA | 1..555 | 571..17 | 2775 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:02:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
I-t-RA | 887 | CG14719-RA | 44..598 | 571..17 | 2775 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:02:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11704073..11704627 | 571..17 | 2775 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:02:57 has no hits.
BS17183.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:09:22 Download gff for
BS17183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14719-PA | 1..555 | 17..571 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:32:29 Download gff for
BS17183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
I-t-RA | 40..604 | 8..579 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:53:26 Download gff for
BS17183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
I-t-RA | 40..604 | 8..579 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:53:26 Download gff for
BS17183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11704069..11704633 | 8..579 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:32:29 Download gff for
BS17183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7529791..7530355 | 8..579 | 98 | | Minus |
BS17183.5prime Sequence
585 bp (585 high quality bases) assembled on 2007-05-15
> BS17183.5prime
GAAGTTATCAGTCGACATGCATAAGAACTTCAAAAGTCTGCAAAACACTA
ACCCATCCAATATGAAGAAGGCCAAAACCGCGGCTAAGGGATTTCCCATT
CACCTTGGTTTTTATAGGAACCCCAGCGAGTATGACGATCGCACGACCAC
CAATCGCGATTATGGATTGAAAAGTTCCAAGGGTTCTGGAACGCCATTTC
CGCAAAAACAAAAGAAATTAGATACGGCGGCACTAACGGCCAAGTTGGAG
ACGGATAGTCTGCTCCGATCTGAATTAAGCGACTTATCGATTGTCATCTC
CGAAAGAAAGGCGTCCTCAGAACCACAAGTGGCATCCAATACTACAACCG
AACCAACGTTTGAGATGAGACGAAAGCTTTTTGACGAGGCCGAGTTCACC
ATCTGCAAGGGTCACAAACTGAACCAGGACTTCCATCATATAGTCGAAGA
TGAAAAGCATTTTAACAAAAGGCAGAGTGCCAAGGATAACATTCCCTATA
GCAATTTCATGGATCTGAAGAACTTCTGCGACCAGAACAACATAAAATTT
TCCAAGGGTTTTGACGGTTAGAAGCTTTCTAGACC
BS17183.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:05:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14719-PA | 555 | I-t-RA | 1..555 | 17..571 | 2775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:05:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
I-t-RA | 887 | CG14719-RA | 44..598 | 17..571 | 2775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:05:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11704073..11704627 | 17..571 | 2775 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:05:45 has no hits.
BS17183.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:05:05 Download gff for
BS17183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14719-PA | 1..555 | 17..571 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:52:45 Download gff for
BS17183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
I-t-RA | 40..604 | 9..580 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:04:14 Download gff for
BS17183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
I-t-RA | 40..604 | 9..580 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:04:14 Download gff for
BS17183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11704069..11704633 | 9..580 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:52:45 Download gff for
BS17183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7529791..7530355 | 9..580 | 98 | | Plus |
BS17183.complete Sequence
587 bp assembled on 2007-05-08
GenBank Submission: FJ638269
> BS17183.complete
GAAGTTATCAGTCGACATGCATAAGAACTTCAAAAGTCTGCAAAACACTA
ACCCATCCAATATGAAGAAGGCCAAAACCGCGGCTAAGGGATTTCCCATT
CACCTTGGTTTTTATAGGAACCCCAGCGAGTATGACGATCGCACGACCAC
CAATCGCGATTATGGATTGAAAAGTTCCAAGGGTTCTGGAACGCCATTTC
CGCAAAAACAAAAGAAATTAGATACGGCGGCACTAACGGCCAAGTTGGAG
ACGGATAGTCTGCTCCGATCTGAATTAAGCGACTTATCGATTGTCATCTC
CGAAAGAAAGGCGTCCTCAGAACCACAAGTGGCATCCAATACTACAACCG
AACCAACGTTTGAGATGAGACGAAAGCTTTTTGACGAGGCCGAGTTCACC
ATCTGCAAGGGTCACAAACTGAACCAGGACTTCCATCATATAGTCGAAGA
TGAAAAGCATTTTAACAAAAGGCAGAGTGCCAAGGATAACATTCCCTATA
GCAATTTCATGGATCTGAAGAACTTCTGCGACCAGAACAACATAAAATTT
TCCAAGGGTTTTGACGGTTAGAAGCTTTCTAGACCAT
BS17183.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:12:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
I-t-RA | 555 | CG14719-PA | 1..555 | 17..571 | 2775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
I-t-RA | 887 | CG14719-RA | 44..598 | 17..571 | 2775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11704073..11704627 | 17..571 | 2775 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:12:18 has no hits.
BS17183.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:32 Download gff for
BS17183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
I-t-RA | 1..555 | 17..571 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:52:15 Download gff for
BS17183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
I-t-RA | 446..1010 | 9..580 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:58 Download gff for
BS17183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
I-t-RA | 44..598 | 17..571 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:32 Download gff for
BS17183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
I-t-RA | 446..1010 | 9..580 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:18 Download gff for
BS17183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
I-t-RA | 44..598 | 17..571 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:18 Download gff for
BS17183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11704073..11704627 | 17..571 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:58 Download gff for
BS17183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7529795..7530349 | 17..571 | 100 | | Plus |
BS17183.pep Sequence
Translation from 16 to 570
> BS17183.pep
MHKNFKSLQNTNPSNMKKAKTAAKGFPIHLGFYRNPSEYDDRTTTNRDYG
LKSSKGSGTPFPQKQKKLDTAALTAKLETDSLLRSELSDLSIVISERKAS
SEPQVASNTTTEPTFEMRRKLFDEAEFTICKGHKLNQDFHHIVEDEKHFN
KRQSAKDNIPYSNFMDLKNFCDQNNIKFSKGFDG*
BS17183.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
I-t-PA | 184 | CG14719-PA | 1..184 | 1..184 | 968 | 100 | Plus |
CG5509-PA | 139 | CG5509-PA | 23..139 | 47..180 | 167 | 32.8 | Plus |