Clone BS17183 Report

Search the DGRC for BS17183

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:171
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptI-t-RA
Protein status:BS17183.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS17183.3prime Sequence

585 bp (585 high quality bases) assembled on 2007-05-15

> BS17183.3prime
ATGGTCTAGAAAGCTTCTAACCGTCAAAACCCTTGGAAAATTTTATGTTG
TTCTGGTCGCAGAAGTTCTTCAGATCCATGAAATTGCTATAGGGAATGTT
ATCCTTGGCACTCTGCCTTTTGTTAAAATGCTTTTCATCTTCGACTATAT
GATGGAAGTCCTGGTTCAGTTTGTGACCCTTGCAGATGGTGAACTCGGCC
TCGTCAAAAAGCTTTCGTCTCATCTCAAACGTTGGTTCGGTTGTAGTATT
GGATGCCACTTGTGGTTCTGAGGACGCCTTTCTTTCGGAGATGACAATCG
ATAAGTCGCTTAATTCAGATCGGAGCAGACTATCCGTCTCCAACTTGGCC
GTTAGTGCCGCCGTATCTAATTTCTTTTGTTTTTGCGGAAATGGCGTTCC
AGAACCCTTGGAACTTTTCAATCCATAATCGCGATTGGTGGTCGTGCGAT
CGTCATACTCGCTGGGGTTCCTATAAAAACCAAGGTGAATGGGAAATCCC
TTAGCCGCGGTTTTGGCCTTCTTCATATTGGATGGGTTAGTGTTTTGCAG
ACTTTTGAAGTTCTTATGCATGTCGACTGATAACT

BS17183.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:09:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG14719-PA 555 I-t-RA 1..555 571..17 2775 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:02:59
Subject Length Description Subject Range Query Range Score Percent Strand
I-t-RA 887 CG14719-RA 44..598 571..17 2775 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:02:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11704073..11704627 571..17 2775 100 Minus
Blast to na_te.dros performed on 2015-02-11 22:02:57 has no hits.

BS17183.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:09:22 Download gff for BS17183.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14719-PA 1..555 17..571 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:32:29 Download gff for BS17183.3prime
Subject Subject Range Query Range Percent Splice Strand
I-t-RA 40..604 8..579 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:53:26 Download gff for BS17183.3prime
Subject Subject Range Query Range Percent Splice Strand
I-t-RA 40..604 8..579 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:53:26 Download gff for BS17183.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11704069..11704633 8..579 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:32:29 Download gff for BS17183.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7529791..7530355 8..579 98   Minus

BS17183.5prime Sequence

585 bp (585 high quality bases) assembled on 2007-05-15

> BS17183.5prime
GAAGTTATCAGTCGACATGCATAAGAACTTCAAAAGTCTGCAAAACACTA
ACCCATCCAATATGAAGAAGGCCAAAACCGCGGCTAAGGGATTTCCCATT
CACCTTGGTTTTTATAGGAACCCCAGCGAGTATGACGATCGCACGACCAC
CAATCGCGATTATGGATTGAAAAGTTCCAAGGGTTCTGGAACGCCATTTC
CGCAAAAACAAAAGAAATTAGATACGGCGGCACTAACGGCCAAGTTGGAG
ACGGATAGTCTGCTCCGATCTGAATTAAGCGACTTATCGATTGTCATCTC
CGAAAGAAAGGCGTCCTCAGAACCACAAGTGGCATCCAATACTACAACCG
AACCAACGTTTGAGATGAGACGAAAGCTTTTTGACGAGGCCGAGTTCACC
ATCTGCAAGGGTCACAAACTGAACCAGGACTTCCATCATATAGTCGAAGA
TGAAAAGCATTTTAACAAAAGGCAGAGTGCCAAGGATAACATTCCCTATA
GCAATTTCATGGATCTGAAGAACTTCTGCGACCAGAACAACATAAAATTT
TCCAAGGGTTTTGACGGTTAGAAGCTTTCTAGACC

BS17183.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:05:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG14719-PA 555 I-t-RA 1..555 17..571 2775 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:05:47
Subject Length Description Subject Range Query Range Score Percent Strand
I-t-RA 887 CG14719-RA 44..598 17..571 2775 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11704073..11704627 17..571 2775 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:05:45 has no hits.

BS17183.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:05:05 Download gff for BS17183.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14719-PA 1..555 17..571 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:52:45 Download gff for BS17183.5prime
Subject Subject Range Query Range Percent Splice Strand
I-t-RA 40..604 9..580 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:04:14 Download gff for BS17183.5prime
Subject Subject Range Query Range Percent Splice Strand
I-t-RA 40..604 9..580 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:04:14 Download gff for BS17183.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11704069..11704633 9..580 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:52:45 Download gff for BS17183.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7529791..7530355 9..580 98   Plus

BS17183.complete Sequence

587 bp assembled on 2007-05-08

GenBank Submission: FJ638269

> BS17183.complete
GAAGTTATCAGTCGACATGCATAAGAACTTCAAAAGTCTGCAAAACACTA
ACCCATCCAATATGAAGAAGGCCAAAACCGCGGCTAAGGGATTTCCCATT
CACCTTGGTTTTTATAGGAACCCCAGCGAGTATGACGATCGCACGACCAC
CAATCGCGATTATGGATTGAAAAGTTCCAAGGGTTCTGGAACGCCATTTC
CGCAAAAACAAAAGAAATTAGATACGGCGGCACTAACGGCCAAGTTGGAG
ACGGATAGTCTGCTCCGATCTGAATTAAGCGACTTATCGATTGTCATCTC
CGAAAGAAAGGCGTCCTCAGAACCACAAGTGGCATCCAATACTACAACCG
AACCAACGTTTGAGATGAGACGAAAGCTTTTTGACGAGGCCGAGTTCACC
ATCTGCAAGGGTCACAAACTGAACCAGGACTTCCATCATATAGTCGAAGA
TGAAAAGCATTTTAACAAAAGGCAGAGTGCCAAGGATAACATTCCCTATA
GCAATTTCATGGATCTGAAGAACTTCTGCGACCAGAACAACATAAAATTT
TCCAAGGGTTTTGACGGTTAGAAGCTTTCTAGACCAT

BS17183.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:12:19
Subject Length Description Subject Range Query Range Score Percent Strand
I-t-RA 555 CG14719-PA 1..555 17..571 2775 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:20
Subject Length Description Subject Range Query Range Score Percent Strand
I-t-RA 887 CG14719-RA 44..598 17..571 2775 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11704073..11704627 17..571 2775 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:12:18 has no hits.

BS17183.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:32 Download gff for BS17183.complete
Subject Subject Range Query Range Percent Splice Strand
I-t-RA 1..555 17..571 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:52:15 Download gff for BS17183.complete
Subject Subject Range Query Range Percent Splice Strand
I-t-RA 446..1010 9..580 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:58 Download gff for BS17183.complete
Subject Subject Range Query Range Percent Splice Strand
I-t-RA 44..598 17..571 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:32 Download gff for BS17183.complete
Subject Subject Range Query Range Percent Splice Strand
I-t-RA 446..1010 9..580 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:18 Download gff for BS17183.complete
Subject Subject Range Query Range Percent Splice Strand
I-t-RA 44..598 17..571 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:18 Download gff for BS17183.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11704073..11704627 17..571 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:58 Download gff for BS17183.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7529795..7530349 17..571 100   Plus

BS17183.pep Sequence

Translation from 16 to 570

> BS17183.pep
MHKNFKSLQNTNPSNMKKAKTAAKGFPIHLGFYRNPSEYDDRTTTNRDYG
LKSSKGSGTPFPQKQKKLDTAALTAKLETDSLLRSELSDLSIVISERKAS
SEPQVASNTTTEPTFEMRRKLFDEAEFTICKGHKLNQDFHHIVEDEKHFN
KRQSAKDNIPYSNFMDLKNFCDQNNIKFSKGFDG*

BS17183.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:40
Subject Length Description Subject Range Query Range Score Percent Strand
I-t-PA 184 CG14719-PA 1..184 1..184 968 100 Plus
CG5509-PA 139 CG5509-PA 23..139 47..180 167 32.8 Plus