Clone Sequence Records
BS17186.3prime Sequence
288 bp (288 high quality bases) assembled on 2007-05-15
> BS17186.3prime
ATGGTCTAGAAAGCTTTTAATCCTCTAGCTTTTCTGGTGGTGGCCCACAT
GGCTGCAGCATTCGCTCCATCAGATTAAATCGCACTCGTGCCTTCGATTC
ATTTTCCGCTATGGCAAAGTAGTTGAGAATATCGTAGTGACCCATGTAGC
TGGCCAAGGAGTCGCGATGTTGATTTGTTAGCCACTCGAACTTTGTGGTA
TCCGCGTGTCCTGTTCCGATGTACTTGCTTTGTAGATGCTCCAGCTGGCT
GTGGATATTGTAGCGTTCACCCATGTCGACTGATAACT
BS17186.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:07:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11985-PA | 258 | CG11985-RA | 1..258 | 274..17 | 1290 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:06:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11985-RA | 370 | CG11985-RA | 78..335 | 274..17 | 1290 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:06:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9015007..9015264 | 17..274 | 1290 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:06:20 has no hits.
BS17186.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:07:34 Download gff for
BS17186.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11985-PA | 1..258 | 17..274 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:57:47 Download gff for
BS17186.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11985-RA | 69..335 | 17..286 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:25:31 Download gff for
BS17186.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11985-RA | 69..335 | 17..286 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:25:31 Download gff for
BS17186.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9015007..9015273 | 17..286 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:57:47 Download gff for
BS17186.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4840729..4840995 | 17..286 | 98 | | Plus |
BS17186.5prime Sequence
288 bp (288 high quality bases) assembled on 2007-05-15
> BS17186.5prime
GAAGTTATCAGTCGACATGGGTGAACGCTACAATATCCACAGCCAGCTGG
AGCATCTACAAAGCAAGTACATCGGAACAGGACACGCGGATACCACAAAG
TTCGAGTGGCTAACAAATCAACATCGCGACTCCTTGGCCAGCTACATGGG
TCACTACGATATTCTCAACTACTTTGCCATAGCGGAAAATGAATCGAAGG
CACGAGTGCGATTTAATCTGATGGAGCGAATGCTGCAGCCATGTGGGCCA
CCACCAGAAAAGCTAGAGGATTAAAAGCTTTCTAGACC
BS17186.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:03:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11985-PA | 258 | CG11985-RA | 1..258 | 17..274 | 1290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:16:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11985-RA | 370 | CG11985-RA | 78..335 | 17..274 | 1290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:16:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9015007..9015264 | 274..17 | 1290 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:16:49 has no hits.
BS17186.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:03:23 Download gff for
BS17186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11985-PA | 1..258 | 17..274 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:51:11 Download gff for
BS17186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11985-RA | 69..335 | 5..274 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:06:23 Download gff for
BS17186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11985-RA | 69..335 | 5..274 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:06:23 Download gff for
BS17186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9015007..9015273 | 5..274 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:51:11 Download gff for
BS17186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4840729..4840995 | 5..274 | 98 | | Minus |
BS17186.complete Sequence
290 bp assembled on 2007-05-08
GenBank Submission: FJ638272
> BS17186.complete
GAAGTTATCAGTCGACATGGGTGAACGCTACAATATCCACAGCCAGCTGG
AGCATCTACAAAGCAAGTACATCGGAACAGGACACGCGGATACCACAAAG
TTCGAGTGGCTAACAAATCAACATCGCGACTCCTTGGCCAGCTACATGGG
TCACTACGATATTCTCAACTACTTTGCCATAGCGGAAAATGAATCGAAGG
CACGAGTGCGATTTAATCTGATGGAGCGAATGCTGCAGCCATGTGGGCCA
CCACCAGAAAAGCTAGAGGATTAAAAGCTTTCTAGACCAT
BS17186.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:28:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11985-RA | 258 | CG11985-PA | 1..258 | 17..274 | 1290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:28:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11985-RA | 370 | CG11985-RA | 78..335 | 17..274 | 1290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:27:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9015007..9015264 | 274..17 | 1290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:28:00 has no hits.
BS17186.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:45:33 Download gff for
BS17186.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11985-RA | 1..258 | 17..274 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:12:24 Download gff for
BS17186.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11985-RA | 1..258 | 17..274 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:41:35 Download gff for
BS17186.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11985-RA | 78..333 | 17..272 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:45:33 Download gff for
BS17186.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11985-RA | 1..258 | 17..274 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:25 Download gff for
BS17186.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11985-RA | 78..333 | 17..272 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:25 Download gff for
BS17186.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9015009..9015264 | 17..272 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:41:35 Download gff for
BS17186.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4840731..4840986 | 17..272 | 100 | | Minus |
BS17186.pep Sequence
Translation from 16 to 273
> BS17186.pep
MGERYNIHSQLEHLQSKYIGTGHADTTKFEWLTNQHRDSLASYMGHYDIL
NYFAIAENESKARVRFNLMERMLQPCGPPPEKLED*
BS17186.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:39:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11985-PA | 85 | CG11985-PA | 1..85 | 1..85 | 462 | 100 | Plus |
