Clone BS17192 Report

Search the DGRC for BS17192

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:171
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptCG15578-RA
Protein status:BS17192.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS17192.3prime Sequence

300 bp (300 high quality bases) assembled on 2007-05-15

> BS17192.3prime
ATGGTCTAGAAAGCTTTCAAAGGTTCATCGGTTTGGTGAGGATCCAAGCG
AGCAGCGAAATCTGGTTTCCCTGGCGCCTCAGAATGGCGCTTTCGATGCC
ATCGTGCAGATTGATTTGCACTTGGGCAAAGAATTCCGGATCGTTACGTT
GGTACTGGCTGCCCAGGAAGATGTTCAGCTCTGTGTCAGTCATGGGTCGG
CTAGTATGCTCCAGGACCATTATAATGGACTTAAGTAGGTTGGGTACCAA
CCGACGTTTCGGCAGTGTCGTGAAGATGTCGGCCATGTCGACTGATAACT

BS17192.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:07:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG15578-PA 270 CG15578-RA 1..270 286..17 1350 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:19:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG15578-RA 415 CG15578-RA 98..371 288..15 1370 100 Minus
CG15577-RA 508 CG15577-RA 139..338 251..52 475 82.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:19:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4277591..4277864 15..288 1370 100 Plus
X 23542271 X 4276663..4276862 52..251 475 82.5 Plus
Blast to na_te.dros performed on 2015-02-13 15:19:07 has no hits.

BS17192.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:07:38 Download gff for BS17192.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15578-PA 1..270 17..286 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:51:55 Download gff for BS17192.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15578-RA 98..371 15..288 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:54:37 Download gff for BS17192.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15578-RA 98..371 15..288 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:54:37 Download gff for BS17192.3prime
Subject Subject Range Query Range Percent Splice Strand
X 4277591..4277864 15..288 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:51:55 Download gff for BS17192.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 4171624..4171897 15..288 100   Plus

BS17192.5prime Sequence

300 bp (300 high quality bases) assembled on 2007-05-15

> BS17192.5prime
GAAGTTATCAGTCGACATGGCCGACATCTTCACGACACTGCCGAAACGTC
GGTTGGTACCCAACCTACTTAAGTCCATTATAATGGTCCTGGAGCATACT
AGCCGACCCATGACTGACACAGAGCTGAACATCTTCCTGGGCAGCCAGTA
CCAACGTAACGATCCGGAATTCTTTGCCCAAGTGCAAATCAATCTGCACG
ATGGCATCGAAAGCGCCATTCTGAGGCGCCAGGGAAACCAGATTTCGCTG
CTCGCTTGGATCCTCACCAAACCGATGAACCTTTGAAAGCTTTCTAGACC

BS17192.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:03:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG15578-PA 270 CG15578-RA 1..270 17..286 1350 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG15578-RA 415 CG15578-RA 98..371 15..288 1370 100 Plus
CG15577-RA 508 CG15577-RA 139..338 52..251 475 82.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:34:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4277591..4277864 288..15 1370 100 Minus
X 23542271 X 4276663..4276862 251..52 475 82.5 Minus
Blast to na_te.dros performed on 2015-02-11 16:34:37 has no hits.

BS17192.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:03:27 Download gff for BS17192.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15578-PA 1..270 17..286 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:50:49 Download gff for BS17192.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15578-RA 98..371 15..288 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:53:39 Download gff for BS17192.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15578-RA 98..371 15..288 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:53:39 Download gff for BS17192.5prime
Subject Subject Range Query Range Percent Splice Strand
X 4277591..4277864 15..288 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:50:49 Download gff for BS17192.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 4171624..4171897 15..288 100   Minus

BS17192.complete Sequence

302 bp assembled on 2007-05-08

GenBank Submission: FJ638276

> BS17192.complete
GAAGTTATCAGTCGACATGGCCGACATCTTCACGACACTGCCGAAACGTC
GGTTGGTACCCAACCTACTTAAGTCCATTATAATGGTCCTGGAGCATACT
AGCCGACCCATGACTGACACAGAGCTGAACATCTTCCTGGGCAGCCAGTA
CCAACGTAACGATCCGGAATTCTTTGCCCAAGTGCAAATCAATCTGCACG
ATGGCATCGAAAGCGCCATTCTGAGGCGCCAGGGAAACCAGATTTCGCTG
CTCGCTTGGATCCTCACCAAACCGATGAACCTTTGAAAGCTTTCTAGACC
AT

BS17192.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:49:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG15578-RA 270 CG15578-PA 1..270 17..286 1350 100 Plus
CG15577-RA 300 CG15577-PA 45..244 52..251 475 82.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:49:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG15578-RA 415 CG15578-RA 98..371 15..288 1370 100 Plus
CG15577-RA 508 CG15577-RA 139..338 52..251 475 82.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:49:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4277591..4277864 288..15 1370 100 Minus
X 23542271 X 4276663..4276862 251..52 475 82.5 Minus
Blast to na_te.dros performed on 2014-11-27 01:49:47 has no hits.

BS17192.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:18 Download gff for BS17192.complete
Subject Subject Range Query Range Percent Splice Strand
CG15578-RA 1..270 17..286 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:33:58 Download gff for BS17192.complete
Subject Subject Range Query Range Percent Splice Strand
CG15578-RA 1..270 17..286 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:54 Download gff for BS17192.complete
Subject Subject Range Query Range Percent Splice Strand
CG15578-RA 100..368 17..285 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:18 Download gff for BS17192.complete
Subject Subject Range Query Range Percent Splice Strand
CG15578-RA 1..270 17..286 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:32:35 Download gff for BS17192.complete
Subject Subject Range Query Range Percent Splice Strand
CG15578-RA 100..368 17..285 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:32:35 Download gff for BS17192.complete
Subject Subject Range Query Range Percent Splice Strand
X 4277594..4277862 17..285 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:54 Download gff for BS17192.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 4171627..4171895 17..285 100   Minus

BS17192.pep Sequence

Translation from 16 to 285

> BS17192.pep
MADIFTTLPKRRLVPNLLKSIIMVLEHTSRPMTDTELNIFLGSQYQRNDP
EFFAQVQINLHDGIESAILRRQGNQISLLAWILTKPMNL*

BS17192.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:26:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG15578-PA 89 CG15578-PA 1..89 1..89 452 100 Plus
CG15577-PA 99 CG15577-PA 9..81 7..78 254 68.5 Plus