Clone Sequence Records
BS17195.3prime Sequence
237 bp (237 high quality bases) assembled on 2007-05-15
> BS17195.3prime
ATGGTCTAGAAAGCTTCTAGCATCTTCCCTTCTTCTCCACGGTAATGGAG
CGTCCTTCTTTAATTAAACAATCCAAAACACACTGGTTACTATAGGTCAC
GGAGTCCGATCCGCACACAGGATCATAGTTTCGAGGACACGGGCAGGAGT
ACTGGAATACCTGGCCCACAGCCATGGCCAAAAGAGCAGACAGACAGAAA
GCGATGAAGGCTAGGCAACGCATGTCGACTGATAACT
BS17195.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:09:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31704-PA | 207 | CG31704-RA | 1..207 | 223..17 | 1035 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:46:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31704-RB | 514 | CG31704-RB | 21..230 | 224..15 | 1050 | 100 | Minus |
CG31704-RA | 308 | CG31704-RA | 21..230 | 224..15 | 1050 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:46:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11840711..11840920 | 224..15 | 1050 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:46:13 has no hits.
BS17195.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:09:47 Download gff for
BS17195.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31704-PA | 1..207 | 17..223 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:51:51 Download gff for
BS17195.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31704-RA | 21..230 | 15..224 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:45:52 Download gff for
BS17195.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31704-RA | 21..230 | 15..224 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:45:52 Download gff for
BS17195.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11840711..11840920 | 15..224 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:51:51 Download gff for
BS17195.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11840711..11840920 | 15..224 | 100 | | Minus |
BS17195.5prime Sequence
237 bp (237 high quality bases) assembled on 2007-05-15
> BS17195.5prime
GAAGTTATCAGTCGACATGCGTTGCCTAGCCTTCATCGCTTTCTGTCTGT
CTGCTCTTTTGGCCATGGCTGTGGGCCAGGTATTCCAGTACTCCTGCCCG
TGTCCTCGAAACTATGATCCTGTGTGCGGATCGGACTCCGTGACCTATAG
TAACCAGTGTGTTTTGGATTGTTTAATTAAAGAAGGACGCTCCATTACCG
TGGAGAAGAAGGGAAGATGCTAGAAGCTTTCTAGACC
BS17195.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:05:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31704-PA | 207 | CG31704-RA | 1..207 | 17..223 | 1035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:58:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31704-RB | 514 | CG31704-RB | 21..230 | 16..225 | 1050 | 100 | Plus |
CG31704-RA | 308 | CG31704-RA | 21..230 | 16..225 | 1050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:57:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11840711..11840920 | 16..225 | 1050 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:57:59 has no hits.
BS17195.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:05:32 Download gff for
BS17195.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31704-PA | 1..207 | 17..223 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:47:18 Download gff for
BS17195.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31704-RA | 21..230 | 16..225 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:26:52 Download gff for
BS17195.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31704-RA | 21..230 | 16..225 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:26:52 Download gff for
BS17195.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11840711..11840920 | 16..225 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:47:18 Download gff for
BS17195.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11840711..11840920 | 16..225 | 100 | | Plus |
BS17195.complete Sequence
239 bp assembled on 2007-05-08
GenBank Submission: FJ638277
> BS17195.complete
GAAGTTATCAGTCGACATGCGTTGCCTAGCCTTCATCGCTTTCTGTCTGT
CTGCTCTTTTGGCCATGGCTGTGGGCCAGGTATTCCAGTACTCCTGCCCG
TGTCCTCGAAACTATGATCCTGTGTGCGGATCGGACTCCGTGACCTATAG
TAACCAGTGTGTTTTGGATTGTTTAATTAAAGAAGGACGCTCCATTACCG
TGGAGAAGAAGGGAAGATGCTAGAAGCTTTCTAGACCAT
BS17195.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:41:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31704-RB | 207 | CG31704-PB | 1..207 | 17..223 | 1035 | 100 | Plus |
CG31704-RA | 207 | CG31704-PA | 1..207 | 17..223 | 1035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:41:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31704-RB | 514 | CG31704-RB | 21..230 | 16..225 | 1050 | 100 | Plus |
CG31704-RA | 308 | CG31704-RA | 21..230 | 16..225 | 1050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:41:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11840711..11840920 | 16..225 | 1050 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:41:20 has no hits.
BS17195.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:20 Download gff for
BS17195.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31704-RA | 1..207 | 17..223 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:50:53 Download gff for
BS17195.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31704-RA | 21..230 | 16..225 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:10 Download gff for
BS17195.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31704-RA | 22..228 | 17..223 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:20 Download gff for
BS17195.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31704-RA | 1..207 | 17..223 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:40 Download gff for
BS17195.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31704-RA | 22..228 | 17..223 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:40 Download gff for
BS17195.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11840712..11840918 | 17..223 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:10 Download gff for
BS17195.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11840712..11840918 | 17..223 | 100 | | Plus |
BS17195.pep Sequence
Translation from 16 to 222
> BS17195.pep
MRCLAFIAFCLSALLAMAVGQVFQYSCPCPRNYDPVCGSDSVTYSNQCVL
DCLIKEGRSITVEKKGRC*
BS17195.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31704-PB | 68 | CG31704-PB | 1..68 | 1..68 | 370 | 100 | Plus |
CG31704-PA | 68 | CG31704-PA | 1..68 | 1..68 | 370 | 100 | Plus |
CG45011-PB | 67 | CG45011-PB | 6..67 | 6..68 | 160 | 52.4 | Plus |
CG45011-PA | 67 | CG45011-PA | 6..67 | 6..68 | 160 | 52.4 | Plus |
Sfp33A3-PA | 99 | CG42474-PA | 1..65 | 1..68 | 153 | 50 | Plus |