Clone Sequence Records
BS17201.complete Sequence
275 bp assembled on 2010-02-09
GenBank Submission: KX800837
> BS17201.complete
GAAGTTATCAGTCGACATGTTTACTTTGTGGACACTGATTGAATCTTCAC
TCCTGTGCCTGAATGCGGTGTGCATTCTGCACGAGGAACGCTTTCTGGCC
AAGTTTGGCTGGGGACGACAGGCGGGCCAGCAGGACTTTGGAGCACCTAC
GGCCAAGGATCAGGTGCTAAACCTCATTCGTTCCATACGCACAGTGGCCA
AAATTCCCCTGATATTCCTTAACATAATTGCGATTATATTTAAACTATTA
CTTGGTTGAAAGCTTTCTAGACCAT
BS17201.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:44:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32069-RA | 243 | CG32069-PA | 1..243 | 17..259 | 1215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:44:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32069-RA | 356 | CG32069-RA | 72..314 | 17..259 | 1215 | 100 | Plus |
Blos2-RA | 645 | CG14145-RA | 603..645 | 259..217 | 215 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:44:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11062291..11062389 | 203..105 | 495 | 100 | Minus |
3L | 28110227 | 3L | 11062456..11062543 | 104..17 | 440 | 100 | Minus |
3L | 28110227 | 3L | 11062173..11062228 | 259..204 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:44:15 has no hits.
BS17201.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:50 Download gff for
BS17201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32069-RA | 1..243 | 17..259 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:13:28 Download gff for
BS17201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32069-RA | 78..313 | 23..258 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:59 Download gff for
BS17201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32069-RA | 78..313 | 23..258 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:51 Download gff for
BS17201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32069-RA | 1..243 | 17..259 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:35:50 Download gff for
BS17201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32069-RA | 78..313 | 23..258 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:35:50 Download gff for
BS17201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11062174..11062228 | 204..258 | 100 | <- | Minus |
3L | 11062291..11062389 | 105..203 | 100 | <- | Minus |
3L | 11062456..11062537 | 23..104 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:59 Download gff for
BS17201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11055274..11055328 | 204..258 | 100 | <- | Minus |
arm_3L | 11055391..11055489 | 105..203 | 100 | <- | Minus |
arm_3L | 11055556..11055637 | 23..104 | 100 | | Minus |
BS17201.5prime Sequence
273 bp (273 high quality bases) assembled on 2007-05-15
> BS17201.5prime
GAAGTTATCAGTCGACATGTTTACTTTGTGGACACTGATTGAATCTTCAC
TCCTGTGCCTGAATGCGGTGTGCATTCTGCACGAGGAACGCTTTCTGGCC
AAGTTTGGCTGGGGACGACAGGCGGGCCAGCAGGACTTTGGAGCACCTAC
GGCCAAGGATCAGGTGCTAAACCTCATTCGTTCCATACGCACAGTGGCCA
AAATTCCCCTGATATTCCTTAACATAATTGCGATTATATTTAAACTATTA
CTTGGTTGAAAGCTTTCTAGACC
BS17201.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:10:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32069-PA | 243 | CG32069-RA | 1..243 | 17..259 | 1215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:04:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32069-RA | 356 | CG32069-RA | 72..314 | 17..259 | 1215 | 100 | Plus |
Blos2-RA | 645 | CG14145-RA | 603..645 | 259..217 | 215 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:04:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11062291..11062389 | 203..105 | 495 | 100 | Minus |
3L | 28110227 | 3L | 11062456..11062543 | 104..17 | 440 | 100 | Minus |
3L | 28110227 | 3L | 11062173..11062228 | 259..204 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:04:51 has no hits.
BS17201.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:10:25 Download gff for
BS17201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32069-PA | 1..243 | 17..259 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:32:38 Download gff for
BS17201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32069-RA | 72..314 | 17..259 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:59:26 Download gff for
BS17201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32069-RA | 72..314 | 17..259 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:59:26 Download gff for
BS17201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11062173..11062228 | 204..259 | 100 | <- | Minus |
3L | 11062291..11062389 | 105..203 | 100 | <- | Minus |
3L | 11062456..11062543 | 17..104 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:32:38 Download gff for
BS17201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11055273..11055328 | 204..259 | 100 | <- | Minus |
arm_3L | 11055391..11055489 | 105..203 | 100 | <- | Minus |
arm_3L | 11055556..11055643 | 17..104 | 100 | | Minus |
BS17201.3prime Sequence
273 bp (273 high quality bases) assembled on 2007-05-15
> BS17201.3prime
ATGGTCTAGAAAGCTTTCAACCAAGTAATAGTTTAAATATAATCGCAATT
ATGTTAAGGAATATCAGGGGAATTTTGGCCACTGTGCGTATGGAACGAAT
GAGGTTTAGCACCTGATCCTTGGCCGTAGGTGCTCCAAAGTCCTGCTGGC
CCGCCTGTCGTCCCCAGCCAAACTTGGCCAGAAAGCGTTCCTCGTGCAGA
ATGCACACCGCATTCAGGCACAGGAGTGAAGATTCAATCAGTGTCCACAA
AGTAAACATGTCGACTGATAACT
BS17201.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:16:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32069-PA | 243 | CG32069-RA | 1..243 | 259..17 | 1215 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:59:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32069-RA | 356 | CG32069-RA | 72..314 | 259..17 | 1215 | 100 | Minus |
Blos2-RA | 645 | CG14145-RA | 603..645 | 17..59 | 215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:59:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11062291..11062389 | 73..171 | 495 | 100 | Plus |
3L | 28110227 | 3L | 11062456..11062543 | 172..259 | 440 | 100 | Plus |
3L | 28110227 | 3L | 11062173..11062228 | 17..72 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:59:04 has no hits.
BS17201.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:16:45 Download gff for
BS17201.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32069-PA | 1..243 | 17..259 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:47:38 Download gff for
BS17201.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32069-RA | 72..314 | 17..259 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:05:42 Download gff for
BS17201.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32069-RA | 72..314 | 17..259 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:05:42 Download gff for
BS17201.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11062173..11062228 | 17..72 | 100 | <- | Plus |
3L | 11062291..11062389 | 73..171 | 100 | <- | Plus |
3L | 11062456..11062543 | 172..259 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:47:38 Download gff for
BS17201.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11055273..11055328 | 17..72 | 100 | <- | Plus |
arm_3L | 11055391..11055489 | 73..171 | 100 | <- | Plus |
arm_3L | 11055556..11055643 | 172..259 | 100 | | Plus |
BS17201.pep Sequence
Translation from 16 to 258
> BS17201.pep
MFTLWTLIESSLLCLNAVCILHEERFLAKFGWGRQAGQQDFGAPTAKDQV
LNLIRSIRTVAKIPLIFLNIIAIIFKLLLG*
BS17201.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:01:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32069-PA | 80 | CG32069-PA | 1..80 | 1..80 | 406 | 100 | Plus |