Clone Sequence Records
BS17204.complete Sequence
221 bp assembled on 2010-02-09
GenBank Submission: KX805572
> BS17204.complete
GAAGTTATCAGTCGACATGAAGTTCTTGCTCCTGAGCGTCTTCCTTTGCC
TTGCCGTGTGCTTCATGGCCACCAGTGCTGCTCCTCGCGAGGAGGCCATT
CCCGATGGCTTCGAAGGTCCTGGCAGTGAGTCCGTCAACCCATCCGACGA
CCAATCCTTCCTGCTCAAGCTGAAGCTGCTCAAGAAGCTGCTGTTCCTGG
GCTAGAAGCTTTCTAGACCAT
BS17204.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:11:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15213-RA | 189 | CG15213-PA | 1..189 | 17..205 | 945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15213-RA | 366 | CG15213-RA | 74..265 | 15..206 | 960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5132897..5133069 | 206..34 | 865 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:11:45 has no hits.
BS17204.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:34 Download gff for
BS17204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15213-RA | 1..189 | 17..205 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:24 Download gff for
BS17204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15213-RA | 1..189 | 17..205 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:48 Download gff for
BS17204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15213-RA | 76..264 | 17..205 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:34 Download gff for
BS17204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15213-RA | 1..189 | 17..205 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:59 Download gff for
BS17204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15213-RA | 76..264 | 17..205 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:59 Download gff for
BS17204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5133128..5133145 | 17..34 | 100 | | Minus |
3L | 5132898..5133068 | 35..205 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:48 Download gff for
BS17204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5125998..5126168 | 35..205 | 100 | <- | Minus |
arm_3L | 5126228..5126245 | 17..34 | 100 | | Minus |
BS17204.3prime Sequence
219 bp (219 high quality bases) assembled on 2007-05-15
> BS17204.3prime
ATGGTCTAGAAAGCTTCTAGCCCAGGAACAGCAGCTTCTTGAGCAGCTTC
AGCTTGAGCAGGAAGGATTGGTCGTCGGATGGGTTGACGGACTCACTGCC
AGGACCTTCGAAGCCATCGGGAATGGCCTCCTCGCGAGGAGCAGCACTGG
TGGCCATGAAGCACACGGCAAGGCAAAGGAAGACGCTCAGGAGCAAGAAC
TTCATGTCGACTGATAACT
BS17204.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:20:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15213-PA | 189 | CG15213-RA | 1..189 | 205..17 | 945 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:41:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15213-RA | 366 | CG15213-RA | 74..265 | 207..16 | 960 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:41:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5132897..5133069 | 16..188 | 865 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:41:16 has no hits.
BS17204.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:20:17 Download gff for
BS17204.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15213-PA | 1..189 | 17..205 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:20:43 Download gff for
BS17204.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15213-RA | 68..265 | 16..213 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:23:56 Download gff for
BS17204.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15213-RA | 68..265 | 16..213 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:23:56 Download gff for
BS17204.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5132897..5133068 | 16..187 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:20:43 Download gff for
BS17204.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5125997..5126168 | 16..187 | 100 | <- | Plus |
BS17204.5prime Sequence
219 bp (219 high quality bases) assembled on 2007-05-15
> BS17204.5prime
GAAGTTATCAGTCGACATGAAGTTCTTGCTCCTGAGCGTCTTCCTTTGCC
TTGCCGTGTGCTTCATGGCCACCAGTGCTGCTCCTCGCGAGGAGGCCATT
CCCGATGGCTTCGAAGGTCCTGGCAGTGAGTCCGTCAACCCATCCGACGA
CCAATCCTTCCTGCTCAAGCTGAAGCTGCTCAAGAAGCTGCTGTTCCTGG
GCTAGAAGCTTTCTAGACC
BS17204.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:13:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15213-PA | 189 | CG15213-RA | 1..189 | 17..205 | 945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:08:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15213-RA | 366 | CG15213-RA | 74..265 | 15..206 | 960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:08:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5132897..5133069 | 206..34 | 865 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 21:08:18 has no hits.
BS17204.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:13:42 Download gff for
BS17204.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15213-PA | 1..189 | 17..205 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:29:44 Download gff for
BS17204.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15213-RA | 68..265 | 9..206 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:55:15 Download gff for
BS17204.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15213-RA | 68..265 | 9..206 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:55:15 Download gff for
BS17204.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5132897..5133068 | 35..206 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:29:44 Download gff for
BS17204.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5125997..5126168 | 35..206 | 100 | <- | Minus |
BS17204.pep Sequence
Translation from 16 to 204
> BS17204.pep
MKFLLLSVFLCLAVCFMATSAAPREEAIPDGFEGPGSESVNPSDDQSFLL
KLKLLKKLLFLG*
BS17204.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:06:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15213-PA | 62 | CG15213-PA | 1..62 | 1..62 | 312 | 100 | Plus |