Clone BS17205 Report

Search the DGRC for BS17205

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:172
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptCG17343-RA
Protein status:BS17205.pep: full length peptide match
Sequenced Size:287

Clone Sequence Records

BS17205.complete Sequence

287 bp assembled on 2010-02-09

GenBank Submission: KX801990

> BS17205.complete
GAAGTTATCAGTCGACATGCGACGCCGCGAACTGCAGACCATCCAGCTGA
AGCTGTCCGATCTCAAGGAGTACGAGCAGGCTAAGATGGAGCGCCTGAGG
AACCGCCAACAATTGCTTACTCCCCGGACGCCTACACCCCCTTCCGACAG
CGAAGTCCTGCCGGCGACCTCCAGCAGCGTTCCAGCTGTTCTCCTGGCCA
GCGGCAAGAACCTGGACGATGACGCCGACAAGTCAGAGCCCACAACCAAG
CCCAGCACATCCTCCACCTAGAAGCTTTCTAGACCAT

BS17205.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:11:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG17343-RA 255 CG17343-PA 1..255 17..271 1275 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG10702-RD 4041 CG10702-RD 3626..3880 271..17 1275 100 Minus
CG17343-RA 571 CG17343-RA 65..319 17..271 1275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19064993..19065247 17..271 1275 100 Plus
Blast to na_te.dros performed on 2014-11-28 03:11:54 has no hits.

BS17205.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:35 Download gff for BS17205.complete
Subject Subject Range Query Range Percent Splice Strand
CG17343-RA 1..255 17..271 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:25 Download gff for BS17205.complete
Subject Subject Range Query Range Percent Splice Strand
CG17343-RA 1..255 17..271 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:52 Download gff for BS17205.complete
Subject Subject Range Query Range Percent Splice Strand
CG10702-RD 3626..3880 17..271 100   Minus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:35 Download gff for BS17205.complete
Subject Subject Range Query Range Percent Splice Strand
CG17343-RA 1..255 17..271 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:03 Download gff for BS17205.complete
Subject Subject Range Query Range Percent Splice Strand
CG17343-RA 65..319 17..271 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:03 Download gff for BS17205.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19064993..19065247 17..271 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:52 Download gff for BS17205.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19064993..19065247 17..271 100   Plus

BS17205.3prime Sequence

285 bp (285 high quality bases) assembled on 2007-05-15

> BS17205.3prime
ATGGTCTAGAAAGCTTCTAGGTGGAGGATGTGCTGGGCTTGGTTGTGGGC
TCTGACTTGTCGGCGTCATCGTCCAGGTTCTTGCCGCTGGCCAGGAGAAC
AGCTGGAACGCTGCTGGAGGTCGCCGGCAGGACTTCGCTGTCGGAAGGGG
GTGTAGGCGTCCGGGGAGTAAGCAATTGTTGGCGGTTCCTCAGGCGCTCC
ATCTTAGCCTGCTCGTACTCCTTGAGATCGGACAGCTTCAGCTGGATGGT
CTGCAGTTCGCGGCGTCGCATGTCGACTGATAACT

BS17205.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:20:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG17343-PA 255 CG17343-RA 1..255 271..17 1275 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:24:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG10702-RD 4041 CG10702-RD 3626..3880 17..271 1275 100 Plus
CG17343-RA 571 CG17343-RA 65..319 271..17 1275 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:24:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19064993..19065247 271..17 1275 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:24:04 has no hits.

BS17205.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:20:26 Download gff for BS17205.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17343-PA 1..255 17..271 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:34:03 Download gff for BS17205.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10702-RD 3626..3880 17..271 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:15 Download gff for BS17205.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17343-RA 65..319 17..271 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:15 Download gff for BS17205.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19064993..19065247 17..271 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:34:03 Download gff for BS17205.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19064993..19065247 17..271 100   Minus

BS17205.5prime Sequence

285 bp (285 high quality bases) assembled on 2007-05-15

> BS17205.5prime
GAAGTTATCAGTCGACATGCGACGCCGCGAACTGCAGACCATCCAGCTGA
AGCTGTCCGATCTCAAGGAGTACGAGCAGGCTAAGATGGAGCGCCTGAGG
AACCGCCAACAATTGCTTACTCCCCGGACGCCTACACCCCCTTCCGACAG
CGAAGTCCTGCCGGCGACCTCCAGCAGCGTTCCAGCTGTTCTCCTGGCCA
GCGGCAAGAACCTGGACGATGACGCCGACAAGTCAGAGCCCACAACCAAG
CCCAGCACATCCTCCACCTAGAAGCTTTCTAGACC

BS17205.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:13:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG17343-PA 255 CG17343-RA 1..255 17..271 1275 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:30:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG10702-RD 4041 CG10702-RD 3626..3880 271..17 1275 100 Minus
CG17343-RA 571 CG17343-RA 65..319 17..271 1275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:30:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19064993..19065247 17..271 1275 100 Plus
Blast to na_te.dros performed on 2015-02-13 02:30:24 has no hits.

BS17205.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:13:47 Download gff for BS17205.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17343-PA 1..255 17..271 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:47:13 Download gff for BS17205.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10702-RD 3626..3880 17..271 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:32:05 Download gff for BS17205.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17343-RA 65..319 17..271 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:32:05 Download gff for BS17205.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19064993..19065247 17..271 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:47:13 Download gff for BS17205.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19064993..19065247 17..271 100   Plus

BS17205.pep Sequence

Translation from 16 to 270

> BS17205.pep
MRRRELQTIQLKLSDLKEYEQAKMERLRNRQQLLTPRTPTPPSDSEVLPA
TSSSVPAVLLASGKNLDDDADKSEPTTKPSTSST*

BS17205.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:06:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG17343-PA 84 CG17343-PA 1..84 1..84 416 100 Plus