Clone BS17206 Report

Search the DGRC for BS17206

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:172
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptCG11755-RA
Protein status:BS17206.pep: full length peptide match
Sequenced Size:497

Clone Sequence Records

BS17206.complete Sequence

497 bp assembled on 2010-02-09

GenBank Submission: KX801818

> BS17206.complete
GAAGTTATCAGTCGACATGGATCCCGATGACGACCTCGTCCTGGAGAATG
AGGCAGAGGAAATTGAACGGTTACAGCTTCCCGAGGAGCTTAAAAAGCCC
ATTGATCCCGAGGAAGAGGATGAACGAGTAGCACGCATCGAATTCAATTG
TTCTGGCTGTGAAATGCACGAGATGGTCCATTATTTTGGACGGAAACCGC
CCTTTGCTCTAGGAGTCATATACCCAGAGGACAACTACGTGATGCGAGAT
CCTTTCCAACCACCTCCACCTCGTTGGCAGTCAAAGCCGGAATACTATAT
CGCAATGGGGACTAAGTGCTCCATCTGCTCCAAGACGGTGTGCAAGGATC
CTGGCTGCAGTTTCTACTATACAGCCTCTTTTTGCTTGCCTTGTGGCAAG
GAAGAATTAAAAAACTGGCCACCTGAGGCTCAAGCTCGAATAAGAAAACA
AATGTCTGTCAGTCAAGGCAGGCAAACATAAAAGCTTTCTAGACCAT

BS17206.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:12:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG11755-RB 465 CG11755-PB 1..465 17..481 2325 100 Plus
CG11755-RA 465 CG11755-PA 1..465 17..481 2325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG11755-RB 816 CG11755-RB 143..611 14..482 2345 100 Plus
CG11755-RA 813 CG11755-RA 140..608 14..482 2345 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8678282..8678750 14..482 2345 100 Plus
Blast to na_te.dros performed on 2014-11-28 03:12:04 has no hits.

BS17206.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:36 Download gff for BS17206.complete
Subject Subject Range Query Range Percent Splice Strand
CG11755-RA 1..465 17..481 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:26 Download gff for BS17206.complete
Subject Subject Range Query Range Percent Splice Strand
CG11755-RA 1..457 17..473 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:55 Download gff for BS17206.complete
Subject Subject Range Query Range Percent Splice Strand
CG11755-RA 143..599 17..473 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:36 Download gff for BS17206.complete
Subject Subject Range Query Range Percent Splice Strand
CG11755-RA 1..465 17..481 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:06 Download gff for BS17206.complete
Subject Subject Range Query Range Percent Splice Strand
CG11755-RA 143..599 17..473 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:06 Download gff for BS17206.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8678285..8678741 17..473 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:55 Download gff for BS17206.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4504007..4504463 17..473 100   Plus

BS17206.3prime Sequence

495 bp (495 high quality bases) assembled on 2007-05-15

> BS17206.3prime
ATGGTCTAGAAAGCTTTTATGTTTGCCTGCCTTGACTGACAGACATTTGT
TTTCTTATTCGAGCTTGAGCCTCAGGTGGCCAGTTTTTTAATTCTTCCTT
GCCACAAGGCAAGCAAAAAGAGGCTGTATAGTAGAAACTGCAGCCAGGAT
CCTTGCACACCGTCTTGGAGCAGATGGAGCACTTAGTCCCCATTGCGATA
TAGTATTCCGGCTTTGACTGCCAACGAGGTGGAGGTGGTTGGAAAGGATC
TCGCATCACGTAGTTGTCCTCTGGGTATATGACTCCTAGAGCAAAGGGCG
GTTTCCGTCCAAAATAATGGACCATCTCGTGCATTTCACAGCCAGAACAA
TTGAATTCGATGCGTGCTACTCGTTCATCCTCTTCCTCGGGATCAATGGG
CTTTTTAAGCTCCTCGGGAAGCTGTAACCGTTCAATTTCCTCTGCCTCAT
TCTCCAGGACGAGGTCGTCATCGGGATCCATGTCGACTGATAACT

BS17206.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:20:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG11755-PA 465 CG11755-RA 1..465 481..17 2325 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG11755-RB 816 CG11755-RB 143..611 484..16 2345 100 Minus
CG11755-RA 813 CG11755-RA 140..608 484..16 2345 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:16:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8678282..8678750 484..16 2345 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:16:32 has no hits.

BS17206.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:20:35 Download gff for BS17206.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11755-PA 1..465 17..481 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:42:07 Download gff for BS17206.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11755-RA 134..617 10..491 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:23:45 Download gff for BS17206.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11755-RA 134..617 10..491 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:23:45 Download gff for BS17206.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8678276..8678759 10..491 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:42:07 Download gff for BS17206.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4503998..4504481 10..491 98   Minus

BS17206.5prime Sequence

495 bp (495 high quality bases) assembled on 2007-05-15

> BS17206.5prime
GAAGTTATCAGTCGACATGGATCCCGATGACGACCTCGTCCTGGAGAATG
AGGCAGAGGAAATTGAACGGTTACAGCTTCCCGAGGAGCTTAAAAAGCCC
ATTGATCCCGAGGAAGAGGATGAACGAGTAGCACGCATCGAATTCAATTG
TTCTGGCTGTGAAATGCACGAGATGGTCCATTATTTTGGACGGAAACCGC
CCTTTGCTCTAGGAGTCATATACCCAGAGGACAACTACGTGATGCGAGAT
CCTTTCCAACCACCTCCACCTCGTTGGCAGTCAAAGCCGGAATACTATAT
CGCAATGGGGACTAAGTGCTCCATCTGCTCCAAGACGGTGTGCAAGGATC
CTGGCTGCAGTTTCTACTATACAGCCTCTTTTTGCTTGCCTTGTGGCAAG
GAAGAATTAAAAAACTGGCCACCTGAGGCTCAAGCTCGAATAAGAAAACA
AATGTCTGTCAGTCAAGGCAGGCAAACATAAAAGCTTTCTAGACC

BS17206.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:13:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG11755-PA 465 CG11755-RA 1..465 17..481 2325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:24:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG11755-RB 816 CG11755-RB 143..611 14..482 2345 100 Plus
CG11755-RA 813 CG11755-RA 140..608 14..482 2345 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:24:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8678282..8678750 14..482 2345 100 Plus
Blast to na_te.dros performed on 2015-02-13 15:24:23 has no hits.

BS17206.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:13:57 Download gff for BS17206.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11755-PA 1..465 17..481 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:16:17 Download gff for BS17206.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11755-RA 134..617 7..488 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:17:54 Download gff for BS17206.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11755-RA 134..617 7..488 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:17:54 Download gff for BS17206.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8678276..8678759 7..488 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:16:17 Download gff for BS17206.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4503998..4504481 7..488 98   Plus

BS17206.pep Sequence

Translation from 16 to 480

> BS17206.pep
MDPDDDLVLENEAEEIERLQLPEELKKPIDPEEEDERVARIEFNCSGCEM
HEMVHYFGRKPPFALGVIYPEDNYVMRDPFQPPPPRWQSKPEYYIAMGTK
CSICSKTVCKDPGCSFYYTASFCLPCGKEELKNWPPEAQARIRKQMSVSQ
GRQT*

BS17206.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:07:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG11755-PB 154 CG11755-PB 1..154 1..154 857 100 Plus
CG11755-PA 154 CG11755-PA 1..154 1..154 857 100 Plus