Clone BS17209 Report

Search the DGRC for BS17209

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:172
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptCG13473-RA
Protein status:BS17209.pep: full length peptide match
Sequenced Size:452

Clone Sequence Records

BS17209.complete Sequence

452 bp assembled on 2010-02-09

GenBank Submission: KX805101

> BS17209.complete
GAAGTTATCAGTCGACATGGCTGCCATGCAGAAGAAGGTCATCATTGTGG
ATTCGAAGAGTTACTTTGATAAGCTCATCGATGATGCGGGAACCAACAAA
TACGTACTTGTCGAGTTCTTCGCCACCTGGTGTGGTCCTTGCGCGATGAT
TGGTCCCCGCTTGGAGCAACTGGCATCGGATTACTTCGGACGGATGTTGG
TCCTTAAGATTGACGTTGATGAGAACGAAGATCTGGCCGTTCAGTACGAA
GTCAACAGCATGCCCACATTTCTGATCATCAAAAACCGAGTGACACTAAT
CCAGTTCGTGGGCGGCAATGTCGAAAGGGTCGTCAGCACGGTGGAGAAGT
TTGTGGGCAAGGTGGAGGACTCCAAGGAGCACAAGTCGAAAGAGGGAGGT
GCTAGTTCAGCTACCGTGCCGAAATTGGAACGCTAAAAGCTTTCTAGACC
AT

BS17209.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:12:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG13473-RA 420 CG13473-PA 1..420 17..436 2100 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG13473-RA 584 CG13473-RA 81..502 17..438 2110 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14728840..14729261 17..438 2110 100 Plus
Blast to na_te.dros performed on 2014-11-28 03:12:08 has no hits.

BS17209.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:37 Download gff for BS17209.complete
Subject Subject Range Query Range Percent Splice Strand
CG13473-RA 1..420 17..436 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:28 Download gff for BS17209.complete
Subject Subject Range Query Range Percent Splice Strand
CG13473-RA 1..418 17..434 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:57 Download gff for BS17209.complete
Subject Subject Range Query Range Percent Splice Strand
CG13473-RA 81..498 17..434 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:38 Download gff for BS17209.complete
Subject Subject Range Query Range Percent Splice Strand
CG13473-RA 1..420 17..436 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:08 Download gff for BS17209.complete
Subject Subject Range Query Range Percent Splice Strand
CG13473-RA 81..498 17..434 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:08 Download gff for BS17209.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14728840..14729257 17..434 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:57 Download gff for BS17209.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14721940..14722357 17..434 100   Plus

BS17209.3prime Sequence

450 bp (450 high quality bases) assembled on 2007-05-15

> BS17209.3prime
ATGGTCTAGAAAGCTTTTAGCGTTCCAATTTCGGCACGGTAGCTGAACTA
GCACCTCCCTCTTTCGACTTGTGCTCCTTGGAGTCCTCCACCTTGCCCAC
AAACTTCTCCACCGTGCTGACGACCCTTTCGACATTGCCGCCCACGAACT
GGATTAGTGTCACTCGGTTTTTGATGATCAGAAATGTGGGCATGCTGTTG
ACTTCGTACTGAACGGCCAGATCTTCGTTCTCATCAACGTCAATCTTAAG
GACCAACATCCGTCCGAAGTAATCCGATGCCAGTTGCTCCAAGCGGGGAC
CAATCATCGCGCAAGGACCACACCAGGTGGCGAAGAACTCGACAAGTACG
TATTTGTTGGTTCCCGCATCATCGATGAGCTTATCAAAGTAACTCTTCGA
ATCCACAATGATGACCTTCTTCTGCATGGCAGCCATGTCGACTGATAACT

BS17209.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:17:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG13473-PA 420 CG13473-RA 1..420 436..17 2100 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:14:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG13473-RA 584 CG13473-RA 81..502 436..15 2110 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:14:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14728840..14729261 436..15 2110 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:14:55 has no hits.

BS17209.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:17:07 Download gff for BS17209.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13473-PA 1..420 17..436 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:41:42 Download gff for BS17209.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13473-RA 79..508 7..440 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:37:28 Download gff for BS17209.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13473-RA 79..508 7..440 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:37:28 Download gff for BS17209.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 14728838..14729267 7..440 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:41:42 Download gff for BS17209.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14721938..14722367 7..440 98   Minus

BS17209.5prime Sequence

450 bp (450 high quality bases) assembled on 2007-05-15

> BS17209.5prime
GAAGTTATCAGTCGACATGGCTGCCATGCAGAAGAAGGTCATCATTGTGG
ATTCGAAGAGTTACTTTGATAAGCTCATCGATGATGCGGGAACCAACAAA
TACGTACTTGTCGAGTTCTTCGCCACCTGGTGTGGTCCTTGCGCGATGAT
TGGTCCCCGCTTGGAGCAACTGGCATCGGATTACTTCGGACGGATGTTGG
TCCTTAAGATTGACGTTGATGAGAACGAAGATCTGGCCGTTCAGTACGAA
GTCAACAGCATGCCCACATTTCTGATCATCAAAAACCGAGTGACACTAAT
CCAGTTCGTGGGCGGCAATGTCGAAAGGGTCGTCAGCACGGTGGAGAAGT
TTGTGGGCAAGGTGGAGGACTCCAAGGAGCACAAGTCGAAAGAGGGAGGT
GCTAGTTCAGCTACCGTGCCGAAATTGGAACGCTAAAAGCTTTCTAGACC

BS17209.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:10:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG13473-PA 420 CG13473-RA 1..420 17..436 2100 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:08:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG13473-RA 584 CG13473-RA 81..502 17..438 2110 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:08:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14728840..14729261 17..438 2110 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:08:33 has no hits.

BS17209.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:10:46 Download gff for BS17209.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13473-PA 1..420 17..436 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:37:06 Download gff for BS17209.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13473-RA 79..512 13..450 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:28:52 Download gff for BS17209.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13473-RA 79..512 13..450 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:28:52 Download gff for BS17209.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14728838..14729271 13..450 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:37:06 Download gff for BS17209.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14721938..14722371 13..450 98   Plus

BS17209.pep Sequence

Translation from 16 to 435

> BS17209.pep
MAAMQKKVIIVDSKSYFDKLIDDAGTNKYVLVEFFATWCGPCAMIGPRLE
QLASDYFGRMLVLKIDVDENEDLAVQYEVNSMPTFLIIKNRVTLIQFVGG
NVERVVSTVEKFVGKVEDSKEHKSKEGGASSATVPKLER*

BS17209.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:07:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG13473-PA 139 CG13473-PA 1..139 1..139 705 100 Plus
TrxT-PB 157 CG3315-PB 20..111 27..118 253 48.9 Plus
TrxT-PA 157 CG3315-PA 20..111 27..118 253 48.9 Plus
Trx-2-PA 106 CG31884-PA 19..103 26..110 239 45.9 Plus
Trx-2-PB 106 CG31884-PB 19..103 26..110 239 45.9 Plus