Clone Sequence Records
BS17209.complete Sequence
452 bp assembled on 2010-02-09
GenBank Submission: KX805101
> BS17209.complete
GAAGTTATCAGTCGACATGGCTGCCATGCAGAAGAAGGTCATCATTGTGG
ATTCGAAGAGTTACTTTGATAAGCTCATCGATGATGCGGGAACCAACAAA
TACGTACTTGTCGAGTTCTTCGCCACCTGGTGTGGTCCTTGCGCGATGAT
TGGTCCCCGCTTGGAGCAACTGGCATCGGATTACTTCGGACGGATGTTGG
TCCTTAAGATTGACGTTGATGAGAACGAAGATCTGGCCGTTCAGTACGAA
GTCAACAGCATGCCCACATTTCTGATCATCAAAAACCGAGTGACACTAAT
CCAGTTCGTGGGCGGCAATGTCGAAAGGGTCGTCAGCACGGTGGAGAAGT
TTGTGGGCAAGGTGGAGGACTCCAAGGAGCACAAGTCGAAAGAGGGAGGT
GCTAGTTCAGCTACCGTGCCGAAATTGGAACGCTAAAAGCTTTCTAGACC
AT
BS17209.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:12:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13473-RA | 420 | CG13473-PA | 1..420 | 17..436 | 2100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13473-RA | 584 | CG13473-RA | 81..502 | 17..438 | 2110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14728840..14729261 | 17..438 | 2110 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:12:08 has no hits.
BS17209.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:37 Download gff for
BS17209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13473-RA | 1..420 | 17..436 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:28 Download gff for
BS17209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13473-RA | 1..418 | 17..434 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:57 Download gff for
BS17209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13473-RA | 81..498 | 17..434 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:38 Download gff for
BS17209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13473-RA | 1..420 | 17..436 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:08 Download gff for
BS17209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13473-RA | 81..498 | 17..434 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:08 Download gff for
BS17209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14728840..14729257 | 17..434 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:57 Download gff for
BS17209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14721940..14722357 | 17..434 | 100 | | Plus |
BS17209.3prime Sequence
450 bp (450 high quality bases) assembled on 2007-05-15
> BS17209.3prime
ATGGTCTAGAAAGCTTTTAGCGTTCCAATTTCGGCACGGTAGCTGAACTA
GCACCTCCCTCTTTCGACTTGTGCTCCTTGGAGTCCTCCACCTTGCCCAC
AAACTTCTCCACCGTGCTGACGACCCTTTCGACATTGCCGCCCACGAACT
GGATTAGTGTCACTCGGTTTTTGATGATCAGAAATGTGGGCATGCTGTTG
ACTTCGTACTGAACGGCCAGATCTTCGTTCTCATCAACGTCAATCTTAAG
GACCAACATCCGTCCGAAGTAATCCGATGCCAGTTGCTCCAAGCGGGGAC
CAATCATCGCGCAAGGACCACACCAGGTGGCGAAGAACTCGACAAGTACG
TATTTGTTGGTTCCCGCATCATCGATGAGCTTATCAAAGTAACTCTTCGA
ATCCACAATGATGACCTTCTTCTGCATGGCAGCCATGTCGACTGATAACT
BS17209.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:17:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13473-PA | 420 | CG13473-RA | 1..420 | 436..17 | 2100 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:14:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13473-RA | 584 | CG13473-RA | 81..502 | 436..15 | 2110 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:14:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14728840..14729261 | 436..15 | 2110 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:14:55 has no hits.
BS17209.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:17:07 Download gff for
BS17209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13473-PA | 1..420 | 17..436 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:41:42 Download gff for
BS17209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13473-RA | 79..508 | 7..440 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:37:28 Download gff for
BS17209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13473-RA | 79..508 | 7..440 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:37:28 Download gff for
BS17209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14728838..14729267 | 7..440 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:41:42 Download gff for
BS17209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14721938..14722367 | 7..440 | 98 | | Minus |
BS17209.5prime Sequence
450 bp (450 high quality bases) assembled on 2007-05-15
> BS17209.5prime
GAAGTTATCAGTCGACATGGCTGCCATGCAGAAGAAGGTCATCATTGTGG
ATTCGAAGAGTTACTTTGATAAGCTCATCGATGATGCGGGAACCAACAAA
TACGTACTTGTCGAGTTCTTCGCCACCTGGTGTGGTCCTTGCGCGATGAT
TGGTCCCCGCTTGGAGCAACTGGCATCGGATTACTTCGGACGGATGTTGG
TCCTTAAGATTGACGTTGATGAGAACGAAGATCTGGCCGTTCAGTACGAA
GTCAACAGCATGCCCACATTTCTGATCATCAAAAACCGAGTGACACTAAT
CCAGTTCGTGGGCGGCAATGTCGAAAGGGTCGTCAGCACGGTGGAGAAGT
TTGTGGGCAAGGTGGAGGACTCCAAGGAGCACAAGTCGAAAGAGGGAGGT
GCTAGTTCAGCTACCGTGCCGAAATTGGAACGCTAAAAGCTTTCTAGACC
BS17209.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:10:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13473-PA | 420 | CG13473-RA | 1..420 | 17..436 | 2100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:08:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13473-RA | 584 | CG13473-RA | 81..502 | 17..438 | 2110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:08:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14728840..14729261 | 17..438 | 2110 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:08:33 has no hits.
BS17209.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:10:46 Download gff for
BS17209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13473-PA | 1..420 | 17..436 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:37:06 Download gff for
BS17209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13473-RA | 79..512 | 13..450 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:28:52 Download gff for
BS17209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13473-RA | 79..512 | 13..450 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:28:52 Download gff for
BS17209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14728838..14729271 | 13..450 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:37:06 Download gff for
BS17209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14721938..14722371 | 13..450 | 98 | | Plus |
BS17209.pep Sequence
Translation from 16 to 435
> BS17209.pep
MAAMQKKVIIVDSKSYFDKLIDDAGTNKYVLVEFFATWCGPCAMIGPRLE
QLASDYFGRMLVLKIDVDENEDLAVQYEVNSMPTFLIIKNRVTLIQFVGG
NVERVVSTVEKFVGKVEDSKEHKSKEGGASSATVPKLER*
BS17209.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:07:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13473-PA | 139 | CG13473-PA | 1..139 | 1..139 | 705 | 100 | Plus |
TrxT-PB | 157 | CG3315-PB | 20..111 | 27..118 | 253 | 48.9 | Plus |
TrxT-PA | 157 | CG3315-PA | 20..111 | 27..118 | 253 | 48.9 | Plus |
Trx-2-PA | 106 | CG31884-PA | 19..103 | 26..110 | 239 | 45.9 | Plus |
Trx-2-PB | 106 | CG31884-PB | 19..103 | 26..110 | 239 | 45.9 | Plus |