Clone Sequence Records
BS17214.complete Sequence
473 bp assembled on 2010-02-09
GenBank Submission: KX800912
> BS17214.complete
GAAGTTATCAGTCGACATGGCCAGTCACTTGCCCAAAGGTGGTGCGCTCT
TCCTGGTGCTCAATCTTCTCCTGCTTTCGCAATGGGAGACCGAGTCTAAG
CTGCTCACGCGTTGTCAGTTGGCCAAGGAGCTGTTGCGCCATGACTTTCC
CCGCAGTTATCTATCAAATTGGGTTTGCCTGGTGGAAGCGGAGAGTGGAC
GCAGTACATCCAAATCTATGCAGCTGCCCAATCAGAGCGTCAGCTACGGT
CTGTTTCAGATTAACAGCAAAAATTGGTGTCGCAAAGGTCGTCGTGGCGG
AATCTGCAACATCAAATGCGAAGAGTTCCTTAACGATGAGATCTCGGATG
ACTCGCGATGTGCCATGCAGATTTTCAACCGCCACGGATTCCAGGCCTGG
CCCGGATGGATGAGCAAATGTCGTGGGCGCACGCTGCCCGATGTCTCGCG
TTGCTAGAAGCTTTCTAGACCAT
BS17214.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:12:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11159-RA | 441 | CG11159-PA | 1..441 | 17..457 | 2205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11159-RA | 656 | CG11159-RA | 117..558 | 16..457 | 2210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20656338..20656493 | 171..16 | 780 | 100 | Minus |
2R | 25286936 | 2R | 20655854..20655989 | 457..322 | 680 | 100 | Minus |
2R | 25286936 | 2R | 20656183..20656271 | 259..171 | 445 | 100 | Minus |
2R | 25286936 | 2R | 20656067..20656133 | 323..257 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:12:17 has no hits.
BS17214.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:41 Download gff for
BS17214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11159-RA | 1..441 | 17..457 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:29 Download gff for
BS17214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11159-RA | 1..441 | 17..457 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:01 Download gff for
BS17214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11159-RA | 118..558 | 17..457 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:41 Download gff for
BS17214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11159-RA | 1..441 | 17..457 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:10 Download gff for
BS17214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11159-RA | 118..558 | 17..457 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:10 Download gff for
BS17214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20655854..20655987 | 324..457 | 100 | <- | Minus |
2R | 20656067..20656130 | 260..323 | 100 | <- | Minus |
2R | 20656183..20656271 | 171..259 | 100 | <- | Minus |
2R | 20656339..20656492 | 17..170 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:01 Download gff for
BS17214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16543359..16543492 | 324..457 | 100 | <- | Minus |
arm_2R | 16543572..16543635 | 260..323 | 100 | <- | Minus |
arm_2R | 16543688..16543776 | 171..259 | 100 | <- | Minus |
arm_2R | 16543844..16543997 | 17..170 | 100 | | Minus |
BS17214.3prime Sequence
471 bp (471 high quality bases) assembled on 2007-05-15
> BS17214.3prime
ATGGTCTAGAAAGCTTCTAGCAACGCGAGACATCGGGCAGCGTGCGCCCA
CGACATTTGCTCATCCATCCGGGCCAGGCCTGGAATCCGTGGCGGTTGAA
AATCTGCATGGCACATCGCGAGTCATCCGAGATCTCATCGTTAAGGAACT
CTTCGCATTTGATGTTGCAGATTCCGCCACGACGACCTTTGCGACACCAA
TTTTTGCTGTTAATCTGAAACAGACCGTAGCTGACGCTCTGATTGGGCAG
CTGCATAGATTTGGATGTACTGCGTCCACTCTCCGCTTCCACCAGGCAAA
CCCAATTTGATAGATAACTGCGGGGAAAGTCATGGCGCAACAGCTCCTTG
GCCAACTGACAACGCGTGAGCAGCTTAGACTCGGTCTCCCATTGCGAAAG
CAGGAGAAGATTGAGCACCAGGAAGAGCGCACCACCTTTGGGCAAGTGAC
TGGCCATGTCGACTGATAACT
BS17214.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:17:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11159-PA | 441 | CG11159-RA | 1..441 | 457..17 | 2205 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:18:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11159-RA | 656 | CG11159-RA | 117..558 | 458..17 | 2210 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:18:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20656338..20656493 | 303..458 | 780 | 100 | Plus |
2R | 25286936 | 2R | 20655854..20655989 | 17..152 | 680 | 100 | Plus |
2R | 25286936 | 2R | 20656183..20656271 | 215..303 | 445 | 100 | Plus |
2R | 25286936 | 2R | 20656067..20656133 | 151..217 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:18:20 has no hits.
BS17214.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:17:23 Download gff for
BS17214.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11159-PA | 1..441 | 17..457 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:40:52 Download gff for
BS17214.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11159-RA | 109..567 | 4..465 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:38:39 Download gff for
BS17214.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11159-RA | 109..567 | 4..465 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:38:39 Download gff for
BS17214.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20656183..20656271 | 215..303 | 100 | <- | Plus |
2R | 20656339..20656496 | 304..465 | 97 | | Plus |
2R | 20655845..20655987 | 4..150 | 96 | <- | Plus |
2R | 20656067..20656130 | 151..214 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:40:52 Download gff for
BS17214.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16543350..16543492 | 4..150 | 96 | <- | Plus |
arm_2R | 16543572..16543635 | 151..214 | 100 | <- | Plus |
arm_2R | 16543688..16543776 | 215..303 | 100 | <- | Plus |
arm_2R | 16543844..16544001 | 304..465 | 97 | | Plus |
BS17214.5prime Sequence
471 bp (471 high quality bases) assembled on 2007-05-15
> BS17214.5prime
GAAGTTATCAGTCGACATGGCCAGTCACTTGCCCAAAGGTGGTGCGCTCT
TCCTGGTGCTCAATCTTCTCCTGCTTTCGCAATGGGAGACCGAGTCTAAG
CTGCTCACGCGTTGTCAGTTGGCCAAGGAGCTGTTGCGCCATGACTTTCC
CCGCAGTTATCTATCAAATTGGGTTTGCCTGGTGGAAGCGGAGAGTGGAC
GCAGTACATCCAAATCTATGCAGCTGCCCAATCAGAGCGTCAGCTACGGT
CTGTTTCAGATTAACAGCAAAAATTGGTGTCGCAAAGGTCGTCGTGGCGG
AATCTGCAACATCAAATGCGAAGAGTTCCTTAACGATGAGATCTCGGATG
ACTCGCGATGTGCCATGCAGATTTTCAACCGCCACGGATTCCAGGCCTGG
CCCGGATGGATGAGCAAATGTCGTGGGCGCACGCTGCCCGATGTCTCGCG
TTGCTAGAAGCTTTCTAGACC
BS17214.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:10:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11159-PA | 441 | CG11159-RA | 1..441 | 17..457 | 2205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:47:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11159-RA | 656 | CG11159-RA | 117..558 | 16..457 | 2210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:47:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20656338..20656493 | 171..16 | 780 | 100 | Minus |
2R | 25286936 | 2R | 20655854..20655989 | 457..322 | 680 | 100 | Minus |
2R | 25286936 | 2R | 20656183..20656271 | 259..171 | 445 | 100 | Minus |
2R | 25286936 | 2R | 20656067..20656133 | 323..257 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:47:20 has no hits.
BS17214.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:10:16 Download gff for
BS17214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11159-PA | 1..441 | 17..457 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:51:59 Download gff for
BS17214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11159-RA | 109..567 | 9..470 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:48:16 Download gff for
BS17214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11159-RA | 109..567 | 9..470 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:48:16 Download gff for
BS17214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20655845..20655987 | 324..470 | 96 | <- | Minus |
2R | 20656067..20656130 | 260..323 | 100 | <- | Minus |
2R | 20656183..20656271 | 171..259 | 100 | <- | Minus |
2R | 20656339..20656496 | 9..170 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:51:59 Download gff for
BS17214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16543350..16543492 | 324..470 | 96 | <- | Minus |
arm_2R | 16543572..16543635 | 260..323 | 100 | <- | Minus |
arm_2R | 16543688..16543776 | 171..259 | 100 | <- | Minus |
arm_2R | 16543844..16544001 | 9..170 | 97 | | Minus |
BS17214.pep Sequence
Translation from 16 to 456
> BS17214.pep
MASHLPKGGALFLVLNLLLLSQWETESKLLTRCQLAKELLRHDFPRSYLS
NWVCLVEAESGRSTSKSMQLPNQSVSYGLFQINSKNWCRKGRRGGICNIK
CEEFLNDEISDDSRCAMQIFNRHGFQAWPGWMSKCRGRTLPDVSRC*
BS17214.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:07:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11159-PA | 146 | CG11159-PA | 1..146 | 1..146 | 793 | 100 | Plus |
CG16799-PB | 179 | CG16799-PB | 27..158 | 14..143 | 332 | 49.2 | Plus |
CG16799-PA | 179 | CG16799-PA | 27..158 | 14..143 | 332 | 49.2 | Plus |
CG16756-PA | 152 | CG16756-PA | 5..146 | 6..143 | 291 | 44.8 | Plus |
LysP-PA | 141 | CG9116-PA | 4..140 | 12..146 | 218 | 35.3 | Plus |