Clone BS17214 Report

Search the DGRC for BS17214

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:172
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptCG11159-RA
Protein status:BS17214.pep: full length peptide match
Sequenced Size:473

Clone Sequence Records

BS17214.complete Sequence

473 bp assembled on 2010-02-09

GenBank Submission: KX800912

> BS17214.complete
GAAGTTATCAGTCGACATGGCCAGTCACTTGCCCAAAGGTGGTGCGCTCT
TCCTGGTGCTCAATCTTCTCCTGCTTTCGCAATGGGAGACCGAGTCTAAG
CTGCTCACGCGTTGTCAGTTGGCCAAGGAGCTGTTGCGCCATGACTTTCC
CCGCAGTTATCTATCAAATTGGGTTTGCCTGGTGGAAGCGGAGAGTGGAC
GCAGTACATCCAAATCTATGCAGCTGCCCAATCAGAGCGTCAGCTACGGT
CTGTTTCAGATTAACAGCAAAAATTGGTGTCGCAAAGGTCGTCGTGGCGG
AATCTGCAACATCAAATGCGAAGAGTTCCTTAACGATGAGATCTCGGATG
ACTCGCGATGTGCCATGCAGATTTTCAACCGCCACGGATTCCAGGCCTGG
CCCGGATGGATGAGCAAATGTCGTGGGCGCACGCTGCCCGATGTCTCGCG
TTGCTAGAAGCTTTCTAGACCAT

BS17214.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:12:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG11159-RA 441 CG11159-PA 1..441 17..457 2205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG11159-RA 656 CG11159-RA 117..558 16..457 2210 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20656338..20656493 171..16 780 100 Minus
2R 25286936 2R 20655854..20655989 457..322 680 100 Minus
2R 25286936 2R 20656183..20656271 259..171 445 100 Minus
2R 25286936 2R 20656067..20656133 323..257 335 100 Minus
Blast to na_te.dros performed on 2014-11-28 03:12:17 has no hits.

BS17214.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:41 Download gff for BS17214.complete
Subject Subject Range Query Range Percent Splice Strand
CG11159-RA 1..441 17..457 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:29 Download gff for BS17214.complete
Subject Subject Range Query Range Percent Splice Strand
CG11159-RA 1..441 17..457 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:01 Download gff for BS17214.complete
Subject Subject Range Query Range Percent Splice Strand
CG11159-RA 118..558 17..457 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:41 Download gff for BS17214.complete
Subject Subject Range Query Range Percent Splice Strand
CG11159-RA 1..441 17..457 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:10 Download gff for BS17214.complete
Subject Subject Range Query Range Percent Splice Strand
CG11159-RA 118..558 17..457 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:10 Download gff for BS17214.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20655854..20655987 324..457 100 <- Minus
2R 20656067..20656130 260..323 100 <- Minus
2R 20656183..20656271 171..259 100 <- Minus
2R 20656339..20656492 17..170 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:01 Download gff for BS17214.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16543359..16543492 324..457 100 <- Minus
arm_2R 16543572..16543635 260..323 100 <- Minus
arm_2R 16543688..16543776 171..259 100 <- Minus
arm_2R 16543844..16543997 17..170 100   Minus

BS17214.3prime Sequence

471 bp (471 high quality bases) assembled on 2007-05-15

> BS17214.3prime
ATGGTCTAGAAAGCTTCTAGCAACGCGAGACATCGGGCAGCGTGCGCCCA
CGACATTTGCTCATCCATCCGGGCCAGGCCTGGAATCCGTGGCGGTTGAA
AATCTGCATGGCACATCGCGAGTCATCCGAGATCTCATCGTTAAGGAACT
CTTCGCATTTGATGTTGCAGATTCCGCCACGACGACCTTTGCGACACCAA
TTTTTGCTGTTAATCTGAAACAGACCGTAGCTGACGCTCTGATTGGGCAG
CTGCATAGATTTGGATGTACTGCGTCCACTCTCCGCTTCCACCAGGCAAA
CCCAATTTGATAGATAACTGCGGGGAAAGTCATGGCGCAACAGCTCCTTG
GCCAACTGACAACGCGTGAGCAGCTTAGACTCGGTCTCCCATTGCGAAAG
CAGGAGAAGATTGAGCACCAGGAAGAGCGCACCACCTTTGGGCAAGTGAC
TGGCCATGTCGACTGATAACT

BS17214.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:17:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG11159-PA 441 CG11159-RA 1..441 457..17 2205 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:18:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG11159-RA 656 CG11159-RA 117..558 458..17 2210 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:18:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20656338..20656493 303..458 780 100 Plus
2R 25286936 2R 20655854..20655989 17..152 680 100 Plus
2R 25286936 2R 20656183..20656271 215..303 445 100 Plus
2R 25286936 2R 20656067..20656133 151..217 335 100 Plus
Blast to na_te.dros performed on 2015-02-13 13:18:20 has no hits.

BS17214.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:17:23 Download gff for BS17214.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11159-PA 1..441 17..457 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:40:52 Download gff for BS17214.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11159-RA 109..567 4..465 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:38:39 Download gff for BS17214.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11159-RA 109..567 4..465 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:38:39 Download gff for BS17214.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20656183..20656271 215..303 100 <- Plus
2R 20656339..20656496 304..465 97   Plus
2R 20655845..20655987 4..150 96 <- Plus
2R 20656067..20656130 151..214 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:40:52 Download gff for BS17214.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16543350..16543492 4..150 96 <- Plus
arm_2R 16543572..16543635 151..214 100 <- Plus
arm_2R 16543688..16543776 215..303 100 <- Plus
arm_2R 16543844..16544001 304..465 97   Plus

BS17214.5prime Sequence

471 bp (471 high quality bases) assembled on 2007-05-15

> BS17214.5prime
GAAGTTATCAGTCGACATGGCCAGTCACTTGCCCAAAGGTGGTGCGCTCT
TCCTGGTGCTCAATCTTCTCCTGCTTTCGCAATGGGAGACCGAGTCTAAG
CTGCTCACGCGTTGTCAGTTGGCCAAGGAGCTGTTGCGCCATGACTTTCC
CCGCAGTTATCTATCAAATTGGGTTTGCCTGGTGGAAGCGGAGAGTGGAC
GCAGTACATCCAAATCTATGCAGCTGCCCAATCAGAGCGTCAGCTACGGT
CTGTTTCAGATTAACAGCAAAAATTGGTGTCGCAAAGGTCGTCGTGGCGG
AATCTGCAACATCAAATGCGAAGAGTTCCTTAACGATGAGATCTCGGATG
ACTCGCGATGTGCCATGCAGATTTTCAACCGCCACGGATTCCAGGCCTGG
CCCGGATGGATGAGCAAATGTCGTGGGCGCACGCTGCCCGATGTCTCGCG
TTGCTAGAAGCTTTCTAGACC

BS17214.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:10:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG11159-PA 441 CG11159-RA 1..441 17..457 2205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:47:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG11159-RA 656 CG11159-RA 117..558 16..457 2210 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:47:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20656338..20656493 171..16 780 100 Minus
2R 25286936 2R 20655854..20655989 457..322 680 100 Minus
2R 25286936 2R 20656183..20656271 259..171 445 100 Minus
2R 25286936 2R 20656067..20656133 323..257 335 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:47:20 has no hits.

BS17214.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:10:16 Download gff for BS17214.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11159-PA 1..441 17..457 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:51:59 Download gff for BS17214.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11159-RA 109..567 9..470 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:48:16 Download gff for BS17214.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11159-RA 109..567 9..470 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:48:16 Download gff for BS17214.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20655845..20655987 324..470 96 <- Minus
2R 20656067..20656130 260..323 100 <- Minus
2R 20656183..20656271 171..259 100 <- Minus
2R 20656339..20656496 9..170 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:51:59 Download gff for BS17214.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16543350..16543492 324..470 96 <- Minus
arm_2R 16543572..16543635 260..323 100 <- Minus
arm_2R 16543688..16543776 171..259 100 <- Minus
arm_2R 16543844..16544001 9..170 97   Minus

BS17214.pep Sequence

Translation from 16 to 456

> BS17214.pep
MASHLPKGGALFLVLNLLLLSQWETESKLLTRCQLAKELLRHDFPRSYLS
NWVCLVEAESGRSTSKSMQLPNQSVSYGLFQINSKNWCRKGRRGGICNIK
CEEFLNDEISDDSRCAMQIFNRHGFQAWPGWMSKCRGRTLPDVSRC*

BS17214.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:07:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG11159-PA 146 CG11159-PA 1..146 1..146 793 100 Plus
CG16799-PB 179 CG16799-PB 27..158 14..143 332 49.2 Plus
CG16799-PA 179 CG16799-PA 27..158 14..143 332 49.2 Plus
CG16756-PA 152 CG16756-PA 5..146 6..143 291 44.8 Plus
LysP-PA 141 CG9116-PA 4..140 12..146 218 35.3 Plus