Clone BS17215 Report

Search the DGRC for BS17215

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:172
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptCG12535-RB
Protein status:BS17215.pep: full length peptide match
Sequenced Size:650

Clone Sequence Records

BS17215.3prime Sequence

648 bp (648 high quality bases) assembled on 2007-05-15

> BS17215.3prime
ATGGTCTAGAAAGCTTTCAAATGATACGCAGCGAGTGCTCGACGTGCTCG
CCGAGCGCCAACTCGAAAACGCTCTTCACGCAGCAAACCATCGCGACGAA
GATCACATGCAAAACGAGCGACAGCAGCGTCTGCGGATCGAGCGGCAAAC
GGCCGGTCAATACGTCGAAGGACCAAAGGAAGCACTCCATCGTTAGGACG
ATGCTGGTCACCAGAATCCATGGCGACATGGCGTAGGGGGAGATCGTTAC
GATTCCGTAAATAAGCATTAGCCAAGCGATCAGGATTATGGCCAAGCTCA
AAAGTCGAGCCTTTCGCAGCGTCCAATGTTTTAGGACATAGAAGTGCCGT
TGGCGCCACATGGCCAATTTGGTGCAGGGACATGACCAAACTTTCATCAG
TTCATAGCAATTGGAACATGTTCCAAAGACACTGAGCAGCACCACCAGCC
AAAAGACAATGGGAAATGATTCGACGCGGCACAGATTGCAGGATTGGAGC
ACGGGTTTAAGCTGGTTCCAATTGGTCATCGGGCAAAAGGTCCAAATCGA
GTACGTGTCATAATTGCTGGACAGGTGAAAGGTTCTACGCAAAAGTGTGC
GAATCCGAGTGGTAATATGCTGCAGTTCGAACATGTCGACTGATAACT

BS17215.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:17:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG12535-PB 618 CG12535-RB 1..618 634..17 3065 99.8 Minus
CG12535-PA 513 CG12535-RA 1..513 529..17 2565 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:59:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG12535-RE 1643 CG12535-RE 848..1465 634..17 3075 99.8 Minus
CG12535-RD 1603 CG12535-RD 719..1336 634..17 3075 99.8 Minus
CG12535-RC 1824 CG12535-RC 1029..1646 634..17 3075 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:59:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3393025..3393414 245..634 1935 99.7 Plus
X 23542271 X 3392664..3392892 17..245 1145 100 Plus
Blast to na_te.dros performed on 2015-02-13 05:59:15 has no hits.

BS17215.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:17:33 Download gff for BS17215.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12535-PB 1..618 17..634 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:47:44 Download gff for BS17215.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12535-RC 1022..1646 17..642 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:06:12 Download gff for BS17215.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12535-RC 1022..1646 17..642 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:06:12 Download gff for BS17215.3prime
Subject Subject Range Query Range Percent Splice Strand
X 3392664..3392891 17..244 100 <- Plus
X 3393025..3393421 245..642 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:47:44 Download gff for BS17215.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 3286697..3286924 17..244 100 <- Plus
arm_X 3287058..3287454 245..642 98   Plus

BS17215.5prime Sequence

648 bp (648 high quality bases) assembled on 2007-05-15

> BS17215.5prime
GAAGTTATCAGTCGACATGTTCGAACTGCAGCATATTACCACTCGGATTC
GCACACTTTTGCGTAGAACCTTTCACCTGTCCAGCAATTATGACACGTAC
TCGATTTGGACCTTTTGCCCGATGACCAATTGGAACCAGCTTAAACCCGT
GCTCCAATCCTGCAATCTGTGCCGCGTCGAATCATTTCCCATTGTCTTTT
GGCTGGTGGTGCTGCTCAGTGTCTTTGGAACATGTTCCAATTGCTATGAA
CTGATGAAAGTTTGGTCATGTCCCTGCACCAAATTGGCCATGTGGCGCCA
ACGGCACTTCTATGTCCTAAAACATTGGACGCTGCGAAAGGCTCGACTTT
TGAGCTTGGCCATAATCCTGATCGCTTGGCTAATGCTTATTTACGGAATC
GTAACGATCTCCCCCTACGCCATGTCGCCATGGATTCTGGTGACCAGCAT
CGTCCTAACGATGGAGTGCTTCCTTTGGTCCTTCGACGTATTGACCGGCC
GTTTGCCGCTCGATCCGCAGACGCTGCTGTCGCTCGTTTTGCATGTGATC
TTCGTCGCGATGGTTTGCTGCGTGAAGAGCGTTTTCGAGTTGGCGCTCGG
CGAGCACGTCGAGCACTCGCTGCGTATCATTTGAAAGCTTTCTAGACC

BS17215.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:10:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG12535-PB 618 CG12535-RB 1..618 17..634 3065 99.8 Plus
CG12535-PA 513 CG12535-RA 1..513 122..634 2565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:00:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG12535-RE 1643 CG12535-RE 848..1465 17..634 3075 99.8 Plus
CG12535-RD 1603 CG12535-RD 719..1336 17..634 3075 99.8 Plus
CG12535-RC 1824 CG12535-RC 1029..1646 17..634 3075 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:00:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3393025..3393414 406..17 1935 99.7 Minus
X 23542271 X 3392664..3392892 634..406 1145 100 Minus
Blast to na_te.dros performed on 2015-02-13 07:00:03 has no hits.

BS17215.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:10:51 Download gff for BS17215.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12535-PB 1..618 17..634 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:48:07 Download gff for BS17215.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12535-RC 1022..1646 9..634 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:36:13 Download gff for BS17215.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12535-RC 1022..1646 9..634 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:36:13 Download gff for BS17215.5prime
Subject Subject Range Query Range Percent Splice Strand
X 3392664..3392891 407..634 100 <- Minus
X 3393025..3393421 9..406 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:48:07 Download gff for BS17215.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 3286697..3286924 407..634 100 <- Minus
arm_X 3287058..3287454 9..406 98   Minus

BS17215.complete Sequence

650 bp assembled on 2012-04-25

GenBank Submission: KX804279

> BS17215.complete
GAAGTTATCAGTCGACATGTTCGAACTGCAGCATATTACCACTCGGATTC
GCACACTTTTGCGTAGAACCTTTCACCTGTCCAGCAATTATGACACGTAC
TCGATTTGGACCTTTTGCCCGATGACCAATTGGAACCAGCTTAAACCCGT
GCTCCAATCCTGCAATCTGTGCCGCGTCGAATCATTTCCCATTGTCTTTT
GGCTGGTGGTGCTGCTCAGTGTCTTTGGAACATGTTCCAATTGCTATGAA
CTGATGAAAGTTTGGTCATGTCCCTGCACCAAATTGGCCATGTGGCGCCA
ACGGCACTTCTATGTCCTAAAACATTGGACGCTGCGAAAGGCTCGACTTT
TGAGCTTGGCCATAATCCTGATCGCTTGGCTAATGCTTATTTACGGAATC
GTAACGATCTCCCCCTACGCCATGTCGCCATGGATTCTGGTGACCAGCAT
CGTCCTAACGATGGAGTGCTTCCTTTGGTCCTTCGACGTATTGACCGGCC
GTTTGCCGCTCGATCCGCAGACGCTGCTGTCGCTCGTTTTGCATGTGATC
TTCGTCGCGATGGTTTGCTGCGTGAAGAGCGTTTTCGAGTTGGCGCTCGG
CGAGCACGTCGAGCACTCGCTGCGTATCATTTGAAAGCTTTCTAGACCAT

BS17215.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:13:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG12535-RE 618 CG12535-PE 1..618 17..634 3075 99.8 Plus
CG12535-RD 618 CG12535-PD 1..618 17..634 3075 99.8 Plus
CG12535-RC 618 CG12535-PC 1..618 17..634 3075 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:13:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG12535-RE 1643 CG12535-RE 848..1465 17..634 3075 99.8 Plus
CG12535-RD 1603 CG12535-RD 719..1336 17..634 3075 99.8 Plus
CG12535-RC 1824 CG12535-RC 1029..1646 17..634 3075 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:12:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3393025..3393414 406..17 1935 99.7 Minus
X 23542271 X 3392664..3392892 634..406 1145 100 Minus
Blast to na_te.dros performed on 2014-11-28 12:12:59 has no hits.

BS17215.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:54 Download gff for BS17215.complete
Subject Subject Range Query Range Percent Splice Strand
CG12535-RB 1..618 17..634 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:52:38 Download gff for BS17215.complete
Subject Subject Range Query Range Percent Splice Strand
CG12535-RB 1..618 17..634 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:35 Download gff for BS17215.complete
Subject Subject Range Query Range Percent Splice Strand
CG12535-RB 602..1213 22..633 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:56 Download gff for BS17215.complete
Subject Subject Range Query Range Percent Splice Strand
CG12535-RC 1034..1645 22..633 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:54 Download gff for BS17215.complete
Subject Subject Range Query Range Percent Splice Strand
CG12535-RB 1..618 17..634 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:59:42 Download gff for BS17215.complete
Subject Subject Range Query Range Percent Splice Strand
CG12535-RC 1034..1645 22..633 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:59:42 Download gff for BS17215.complete
Subject Subject Range Query Range Percent Splice Strand
X 3392665..3392891 407..633 100 <- Minus
X 3393025..3393409 22..406 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:56 Download gff for BS17215.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 3286698..3286924 407..633 100 <- Minus
arm_X 3287058..3287442 22..406 99   Minus

BS17215.pep Sequence

Translation from 16 to 633

> BS17215.pep
MFELQHITTRIRTLLRRTFHLSSNYDTYSIWTFCPMTNWNQLKPVLQSCN
LCRVESFPIVFWLVVLLSVFGTCSNCYELMKVWSCPCTKLAMWRQRHFYV
LKHWTLRKARLLSLAIILIAWLMLIYGIVTISPYAMSPWILVTSIVLTME
CFLWSFDVLTGRLPLDPQTLLSLVLHVIFVAMVCCVKSVFELALGEHVEH
SLRII*

BS17215.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:21:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG12535-PE 205 CG12535-PE 1..205 1..205 1101 100 Plus
CG12535-PD 205 CG12535-PD 1..205 1..205 1101 100 Plus
CG12535-PC 205 CG12535-PC 1..205 1..205 1101 100 Plus
CG12535-PF 205 CG12535-PF 1..205 1..205 1101 100 Plus
CG12535-PB 205 CG12535-PB 1..205 1..205 1101 100 Plus