Clone Sequence Records
BS17215.3prime Sequence
648 bp (648 high quality bases) assembled on 2007-05-15
> BS17215.3prime
ATGGTCTAGAAAGCTTTCAAATGATACGCAGCGAGTGCTCGACGTGCTCG
CCGAGCGCCAACTCGAAAACGCTCTTCACGCAGCAAACCATCGCGACGAA
GATCACATGCAAAACGAGCGACAGCAGCGTCTGCGGATCGAGCGGCAAAC
GGCCGGTCAATACGTCGAAGGACCAAAGGAAGCACTCCATCGTTAGGACG
ATGCTGGTCACCAGAATCCATGGCGACATGGCGTAGGGGGAGATCGTTAC
GATTCCGTAAATAAGCATTAGCCAAGCGATCAGGATTATGGCCAAGCTCA
AAAGTCGAGCCTTTCGCAGCGTCCAATGTTTTAGGACATAGAAGTGCCGT
TGGCGCCACATGGCCAATTTGGTGCAGGGACATGACCAAACTTTCATCAG
TTCATAGCAATTGGAACATGTTCCAAAGACACTGAGCAGCACCACCAGCC
AAAAGACAATGGGAAATGATTCGACGCGGCACAGATTGCAGGATTGGAGC
ACGGGTTTAAGCTGGTTCCAATTGGTCATCGGGCAAAAGGTCCAAATCGA
GTACGTGTCATAATTGCTGGACAGGTGAAAGGTTCTACGCAAAAGTGTGC
GAATCCGAGTGGTAATATGCTGCAGTTCGAACATGTCGACTGATAACT
BS17215.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:17:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12535-PB | 618 | CG12535-RB | 1..618 | 634..17 | 3065 | 99.8 | Minus |
CG12535-PA | 513 | CG12535-RA | 1..513 | 529..17 | 2565 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:59:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12535-RE | 1643 | CG12535-RE | 848..1465 | 634..17 | 3075 | 99.8 | Minus |
CG12535-RD | 1603 | CG12535-RD | 719..1336 | 634..17 | 3075 | 99.8 | Minus |
CG12535-RC | 1824 | CG12535-RC | 1029..1646 | 634..17 | 3075 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:59:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3393025..3393414 | 245..634 | 1935 | 99.7 | Plus |
X | 23542271 | X | 3392664..3392892 | 17..245 | 1145 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:59:15 has no hits.
BS17215.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:17:33 Download gff for
BS17215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12535-PB | 1..618 | 17..634 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:47:44 Download gff for
BS17215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12535-RC | 1022..1646 | 17..642 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:06:12 Download gff for
BS17215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12535-RC | 1022..1646 | 17..642 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:06:12 Download gff for
BS17215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3392664..3392891 | 17..244 | 100 | <- | Plus |
X | 3393025..3393421 | 245..642 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:47:44 Download gff for
BS17215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3286697..3286924 | 17..244 | 100 | <- | Plus |
arm_X | 3287058..3287454 | 245..642 | 98 | | Plus |
BS17215.5prime Sequence
648 bp (648 high quality bases) assembled on 2007-05-15
> BS17215.5prime
GAAGTTATCAGTCGACATGTTCGAACTGCAGCATATTACCACTCGGATTC
GCACACTTTTGCGTAGAACCTTTCACCTGTCCAGCAATTATGACACGTAC
TCGATTTGGACCTTTTGCCCGATGACCAATTGGAACCAGCTTAAACCCGT
GCTCCAATCCTGCAATCTGTGCCGCGTCGAATCATTTCCCATTGTCTTTT
GGCTGGTGGTGCTGCTCAGTGTCTTTGGAACATGTTCCAATTGCTATGAA
CTGATGAAAGTTTGGTCATGTCCCTGCACCAAATTGGCCATGTGGCGCCA
ACGGCACTTCTATGTCCTAAAACATTGGACGCTGCGAAAGGCTCGACTTT
TGAGCTTGGCCATAATCCTGATCGCTTGGCTAATGCTTATTTACGGAATC
GTAACGATCTCCCCCTACGCCATGTCGCCATGGATTCTGGTGACCAGCAT
CGTCCTAACGATGGAGTGCTTCCTTTGGTCCTTCGACGTATTGACCGGCC
GTTTGCCGCTCGATCCGCAGACGCTGCTGTCGCTCGTTTTGCATGTGATC
TTCGTCGCGATGGTTTGCTGCGTGAAGAGCGTTTTCGAGTTGGCGCTCGG
CGAGCACGTCGAGCACTCGCTGCGTATCATTTGAAAGCTTTCTAGACC
BS17215.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:10:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12535-PB | 618 | CG12535-RB | 1..618 | 17..634 | 3065 | 99.8 | Plus |
CG12535-PA | 513 | CG12535-RA | 1..513 | 122..634 | 2565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:00:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12535-RE | 1643 | CG12535-RE | 848..1465 | 17..634 | 3075 | 99.8 | Plus |
CG12535-RD | 1603 | CG12535-RD | 719..1336 | 17..634 | 3075 | 99.8 | Plus |
CG12535-RC | 1824 | CG12535-RC | 1029..1646 | 17..634 | 3075 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:00:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3393025..3393414 | 406..17 | 1935 | 99.7 | Minus |
X | 23542271 | X | 3392664..3392892 | 634..406 | 1145 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:00:03 has no hits.
BS17215.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:10:51 Download gff for
BS17215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12535-PB | 1..618 | 17..634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:48:07 Download gff for
BS17215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12535-RC | 1022..1646 | 9..634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:36:13 Download gff for
BS17215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12535-RC | 1022..1646 | 9..634 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:36:13 Download gff for
BS17215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3392664..3392891 | 407..634 | 100 | <- | Minus |
X | 3393025..3393421 | 9..406 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:48:07 Download gff for
BS17215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3286697..3286924 | 407..634 | 100 | <- | Minus |
arm_X | 3287058..3287454 | 9..406 | 98 | | Minus |
BS17215.complete Sequence
650 bp assembled on 2012-04-25
GenBank Submission: KX804279
> BS17215.complete
GAAGTTATCAGTCGACATGTTCGAACTGCAGCATATTACCACTCGGATTC
GCACACTTTTGCGTAGAACCTTTCACCTGTCCAGCAATTATGACACGTAC
TCGATTTGGACCTTTTGCCCGATGACCAATTGGAACCAGCTTAAACCCGT
GCTCCAATCCTGCAATCTGTGCCGCGTCGAATCATTTCCCATTGTCTTTT
GGCTGGTGGTGCTGCTCAGTGTCTTTGGAACATGTTCCAATTGCTATGAA
CTGATGAAAGTTTGGTCATGTCCCTGCACCAAATTGGCCATGTGGCGCCA
ACGGCACTTCTATGTCCTAAAACATTGGACGCTGCGAAAGGCTCGACTTT
TGAGCTTGGCCATAATCCTGATCGCTTGGCTAATGCTTATTTACGGAATC
GTAACGATCTCCCCCTACGCCATGTCGCCATGGATTCTGGTGACCAGCAT
CGTCCTAACGATGGAGTGCTTCCTTTGGTCCTTCGACGTATTGACCGGCC
GTTTGCCGCTCGATCCGCAGACGCTGCTGTCGCTCGTTTTGCATGTGATC
TTCGTCGCGATGGTTTGCTGCGTGAAGAGCGTTTTCGAGTTGGCGCTCGG
CGAGCACGTCGAGCACTCGCTGCGTATCATTTGAAAGCTTTCTAGACCAT
BS17215.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:13:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12535-RE | 618 | CG12535-PE | 1..618 | 17..634 | 3075 | 99.8 | Plus |
CG12535-RD | 618 | CG12535-PD | 1..618 | 17..634 | 3075 | 99.8 | Plus |
CG12535-RC | 618 | CG12535-PC | 1..618 | 17..634 | 3075 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:13:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12535-RE | 1643 | CG12535-RE | 848..1465 | 17..634 | 3075 | 99.8 | Plus |
CG12535-RD | 1603 | CG12535-RD | 719..1336 | 17..634 | 3075 | 99.8 | Plus |
CG12535-RC | 1824 | CG12535-RC | 1029..1646 | 17..634 | 3075 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:12:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3393025..3393414 | 406..17 | 1935 | 99.7 | Minus |
X | 23542271 | X | 3392664..3392892 | 634..406 | 1145 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:12:59 has no hits.
BS17215.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:54 Download gff for
BS17215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12535-RB | 1..618 | 17..634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:52:38 Download gff for
BS17215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12535-RB | 1..618 | 17..634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:35 Download gff for
BS17215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12535-RB | 602..1213 | 22..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:56 Download gff for
BS17215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12535-RC | 1034..1645 | 22..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:54 Download gff for
BS17215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12535-RB | 1..618 | 17..634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:59:42 Download gff for
BS17215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12535-RC | 1034..1645 | 22..633 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:59:42 Download gff for
BS17215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3392665..3392891 | 407..633 | 100 | <- | Minus |
X | 3393025..3393409 | 22..406 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:56 Download gff for
BS17215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3286698..3286924 | 407..633 | 100 | <- | Minus |
arm_X | 3287058..3287442 | 22..406 | 99 | | Minus |
BS17215.pep Sequence
Translation from 16 to 633
> BS17215.pep
MFELQHITTRIRTLLRRTFHLSSNYDTYSIWTFCPMTNWNQLKPVLQSCN
LCRVESFPIVFWLVVLLSVFGTCSNCYELMKVWSCPCTKLAMWRQRHFYV
LKHWTLRKARLLSLAIILIAWLMLIYGIVTISPYAMSPWILVTSIVLTME
CFLWSFDVLTGRLPLDPQTLLSLVLHVIFVAMVCCVKSVFELALGEHVEH
SLRII*
BS17215.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:21:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12535-PE | 205 | CG12535-PE | 1..205 | 1..205 | 1101 | 100 | Plus |
CG12535-PD | 205 | CG12535-PD | 1..205 | 1..205 | 1101 | 100 | Plus |
CG12535-PC | 205 | CG12535-PC | 1..205 | 1..205 | 1101 | 100 | Plus |
CG12535-PF | 205 | CG12535-PF | 1..205 | 1..205 | 1101 | 100 | Plus |
CG12535-PB | 205 | CG12535-PB | 1..205 | 1..205 | 1101 | 100 | Plus |