Clone BS17221 Report

Search the DGRC for BS17221

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:172
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptCG14071-RA
Protein status:BS17221.pep: full length peptide match
Sequenced Size:443

Clone Sequence Records

BS17221.complete Sequence

443 bp assembled on 2010-02-09

GenBank Submission: KX804511

> BS17221.complete
GAAGTTATCAGTCGACATGTCCAGATCGGCAAAGGGCTTTGGTCGTTTAA
TCAATCCGGGCGTGGTACTCCATCCGGAACTGCATCAAAAGATGGCCGAC
TTTGAGGCCATGACCATCGAGCGATCTGATTTGGATCACGAATTGAGCCG
ATTGCGCAAGCAGCAGGACGATACCGAGGATAATTTGGCAGAGGCGCTGG
CCGAGGACGAGTTCCAGTGCAATTTGAGTGGCCAGCCATTCGTTGCTCCC
AACGAGGACGAGCTGCAGGAAATTCTGAGGAATCACCTCGGTAGCATTAT
CAACAAGCTGGCTGCCACGTACGAGCGCCTTATTTACCTGGATGCGGACA
TCAGGAAGCTGAAGGGAGTCATTGAAAAGGCCATCACAGTGGCTAATGAG
GAATCGGCAGCAGCCGCCTCAATGTGAAAGCTTTCTAGACCAT

BS17221.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:00:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG14071-RC 411 CG14071-PC 1..411 17..427 2055 100 Plus
CG14071-RB 411 CG14071-PB 1..411 17..427 2055 100 Plus
CG14071-RA 411 CG14071-PA 1..411 17..427 2055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG14071-RC 585 CG14071-RC 76..487 17..428 2060 100 Plus
CG14071-RB 1225 CG14071-RB 150..561 17..428 2060 100 Plus
CG14071-RA 659 CG14071-RA 150..561 17..428 2060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10888367..10888778 428..17 2060 100 Minus
Blast to na_te.dros performed on 2014-11-28 03:00:06 has no hits.

BS17221.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:38:20 Download gff for BS17221.complete
Subject Subject Range Query Range Percent Splice Strand
CG14071-RA 1..411 17..427 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:05 Download gff for BS17221.complete
Subject Subject Range Query Range Percent Splice Strand
CG14071-RA 126..535 17..426 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:32 Download gff for BS17221.complete
Subject Subject Range Query Range Percent Splice Strand
CG14071-RA 150..559 17..426 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:38:21 Download gff for BS17221.complete
Subject Subject Range Query Range Percent Splice Strand
CG14071-RA 121..545 9..437 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:27 Download gff for BS17221.complete
Subject Subject Range Query Range Percent Splice Strand
CG14071-RA 150..559 17..426 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:27 Download gff for BS17221.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10888369..10888778 17..426 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:32 Download gff for BS17221.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10888369..10888778 17..426 100   Minus

BS17221.3prime Sequence

441 bp (441 high quality bases) assembled on 2007-05-15

> BS17221.3prime
ATGGTCTAGAAAGCTTTCACATTGAGGCGGCTGCTGCCGATTCCTCATTA
GCCACTGTGATGGCCTTTTCAATGACTCCCTTCAGCTTCCTGATGTCCGC
ATCCAGGTAAATAAGGCGCTCGTACGTGGCAGCCAGCTTGTTGATAATGC
TACCGAGGTGATTCCTCAGAATTTCCTGCAGCTCGTCCTCGTTGGGAGCA
ACGAATGGCTGGCCACTCAAATTGCACTGGAACTCGTCCTCGGCCAGCGC
CTCTGCCAAATTATCCTCGGTATCGTCCTGCTGCTTGCGCAATCGGCTCA
ATTCGTGATCCAAATCAGATCGCTCGATGGTCATGGCCTCAAAGTCGGCC
ATCTTTTGATGCAGTTCCGGATGGAGTACCACGCCCGGATTGATTAAACG
ACCAAAGCCCTTTGCCGATCTGGACATGTCGACTGATAACT

BS17221.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:17:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG14071-PA 411 CG14071-RA 1..411 427..17 2055 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:26:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG14071-RC 585 CG14071-RC 76..487 427..16 2060 100 Minus
CG14071-RB 1225 CG14071-RB 150..561 427..16 2060 100 Minus
CG14071-RA 659 CG14071-RA 150..561 427..16 2060 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:26:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10888367..10888778 16..427 2060 100 Plus
Blast to na_te.dros performed on 2015-02-13 15:26:58 has no hits.

BS17221.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:17:37 Download gff for BS17221.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14071-PA 1..411 17..427 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:16:42 Download gff for BS17221.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14071-RA 145..569 7..435 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:48:14 Download gff for BS17221.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14071-RA 145..569 7..435 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:48:14 Download gff for BS17221.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10888359..10888783 7..435 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:16:42 Download gff for BS17221.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10888359..10888783 7..435 98   Plus

BS17221.5prime Sequence

441 bp (441 high quality bases) assembled on 2007-05-15

> BS17221.5prime
GAAGTTATCACTCGACATGTCCAGATCGGCAAAGGGCTTTGGTCGTTTAA
TCAATCCGGGCGTGGTACTCCATCCGGAACTGCATCAAAAGATGGCCGAC
TTTGAGGCCATGACCATCGAGCGATCTGATTTGGATCACGAATTGAGCCG
ATTGCGCAAGCAGCAGGACGATACCGAGGATAATTTGGCAGAGGCGCTGG
CCGAGGACGAGTTCCAGTGCAATTTGAGTGGCCAGCCATTCGTTGCTCCC
AACGAGGACGAGCTGCAGGAAATTCTGAGGAATCACCTCGGTAGCATTAT
CAACAAGCTGGCTGCCACGTACGAGCGCCTTATTTACCTGGATGCGGACA
TCAGGAAGCTGAAGGGAGTCATTGAAAAGGCCATCACAGTGGCTAATGAG
GAATCGGCAGCAGCCGCCTCAATGTGAAAGCTTTCTAGACC

BS17221.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:10:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG14071-PA 411 CG14071-RA 1..411 17..427 2055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:11:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG14071-RC 585 CG14071-RC 76..487 17..428 2060 100 Plus
CG14071-RB 1225 CG14071-RB 150..561 17..428 2060 100 Plus
CG14071-RA 659 CG14071-RA 150..561 17..428 2060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:11:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10888367..10888778 428..17 2060 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:11:16 has no hits.

BS17221.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:10:55 Download gff for BS17221.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14071-PA 1..411 17..427 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:54:08 Download gff for BS17221.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14071-RA 145..569 9..437 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:50:47 Download gff for BS17221.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14071-RA 145..569 9..437 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:50:47 Download gff for BS17221.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10888359..10888783 9..437 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:54:08 Download gff for BS17221.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10888359..10888783 9..437 98   Minus

BS17221.pep Sequence

Translation from 16 to 426

> BS17221.pep
MSRSAKGFGRLINPGVVLHPELHQKMADFEAMTIERSDLDHELSRLRKQQ
DDTEDNLAEALAEDEFQCNLSGQPFVAPNEDELQEILRNHLGSIINKLAA
TYERLIYLDADIRKLKGVIEKAITVANEESAAAASM*

BS17221.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:59:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG14071-PC 136 CG14071-PC 1..136 1..136 681 100 Plus
CG14071-PB 136 CG14071-PB 1..136 1..136 681 100 Plus
CG14071-PA 136 CG14071-PA 1..136 1..136 681 100 Plus