Clone Sequence Records
BS17222.complete Sequence
281 bp assembled on 2010-02-09
GenBank Submission: KX806415
> BS17222.complete
GAAGTTATCAGTCGACATGTCATCCGAAGAAGAGGTATACACGGAGGAGG
AGACTGATCAGGCCATGTCCTTCATTCGTGAGCATGACCTGCCCATGTCG
GAGCTGCAGTATGCACTCAGATATGTCCGCATTCTGCGCGAAAACAAATC
ACTGAGCGATCAGGTTATGGGAATCCGTGAGCCACAGAATCCTGTTGCTG
AGGTGGCGCCACCGTCATTCGACTGGAATGACAAGGAGAATAAAGCCGTG
GCCCGGGATCCATAAAAGCTTTCTAGACCAT
BS17222.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:38:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14113-RA | 249 | CG14113-PA | 1..249 | 17..265 | 1245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:38:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14113-RA | 513 | CG14113-RA | 84..332 | 17..265 | 1245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:38:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13329286..13329518 | 33..265 | 1165 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:38:30 has no hits.
BS17222.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:45:19 Download gff for
BS17222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14113-RA | 1..249 | 17..265 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:45 Download gff for
BS17222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14113-RA | 1..247 | 17..263 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:47 Download gff for
BS17222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14113-RA | 84..330 | 17..263 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:45:19 Download gff for
BS17222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14113-RA | 1..256 | 17..272 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:33:35 Download gff for
BS17222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14113-RA | 84..330 | 17..263 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:33:35 Download gff for
BS17222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13329218..13329235 | 17..34 | 100 | -> | Plus |
3L | 13329288..13329516 | 35..263 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:47 Download gff for
BS17222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13322318..13322335 | 17..34 | 100 | -> | Plus |
arm_3L | 13322388..13322616 | 35..263 | 100 | | Plus |
BS17222.3prime Sequence
279 bp (279 high quality bases) assembled on 2007-05-15
> BS17222.3prime
ATGGTCTAGAAAGCTTTTATGGATCCCGGGCCACGGCTTTATTCTCCTTG
TCATTCCAGTCGAATGACGGTGGCGCCACCTCAGCAACAGGATTCTGTGG
CTCACGGATTCCCATAACCTGATCGCTCAGTGATTTGTTTTCGCGCAGAA
TGCGGACATATCTGAGTGCATACTGCAGCTCCGACATGGGCAGGTCATGC
TCACGAATGAAGGACATGGCCTGATCAGTCTCCTCCTCCGTGTATACCTC
TTCTTCGGATGACATGTCGACTGATAACT
BS17222.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:20:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14113-PA | 249 | CG14113-RA | 1..249 | 265..17 | 1245 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:00:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14113-RA | 513 | CG14113-RA | 84..332 | 265..17 | 1245 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:00:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13329286..13329518 | 249..17 | 1165 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:00:22 has no hits.
BS17222.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:20:47 Download gff for
BS17222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14113-PA | 1..249 | 17..265 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:48:14 Download gff for
BS17222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14113-RA | 73..339 | 10..277 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:08:05 Download gff for
BS17222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14113-RA | 73..339 | 10..277 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:08:05 Download gff for
BS17222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13329288..13329525 | 10..247 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:48:14 Download gff for
BS17222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13322388..13322625 | 10..247 | 98 | | Minus |
BS17222.5prime Sequence
279 bp (279 high quality bases) assembled on 2007-05-15
> BS17222.5prime
GAAGTTATCAGTCGACATGTCATCCGAAGAAGAGGTATACACGGAGGAGG
AGACTGATCAGGCCATGTCCTTCATTCGTGAGCATGACCTGCCCATGTCG
GAGCTGCAGTATGCACTCAGATATGTCCGCATTCTGCGCGAAAACAAATC
ACTGAGCGATCAGGTTATGGGAATCCGTGAGCCACAGAATCCTGTTGCTG
AGGTGGCGCCACCGTCATTCGACTGGAATGACAAGGAGAATAAAGCCGTG
GCCCGGGATCCATAAAAGCTTTCTAGACC
BS17222.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:14:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14113-PA | 249 | CG14113-RA | 1..249 | 17..265 | 1245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:26:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14113-RA | 513 | CG14113-RA | 84..332 | 17..265 | 1245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:26:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13329286..13329518 | 33..265 | 1165 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:26:13 has no hits.
BS17222.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:14:07 Download gff for
BS17222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14113-PA | 1..249 | 17..265 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:00:08 Download gff for
BS17222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14113-RA | 73..339 | 5..272 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:18:38 Download gff for
BS17222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14113-RA | 73..339 | 5..272 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:18:38 Download gff for
BS17222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13329288..13329525 | 35..272 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:00:08 Download gff for
BS17222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13322388..13322625 | 35..272 | 98 | | Plus |
BS17222.pep Sequence
Translation from 16 to 264
> BS17222.pep
MSSEEEVYTEEETDQAMSFIREHDLPMSELQYALRYVRILRENKSLSDQV
MGIREPQNPVAEVAPPSFDWNDKENKAVARDP*
BS17222.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:51:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14113-PA | 82 | CG14113-PA | 1..82 | 1..82 | 423 | 100 | Plus |