Clone Sequence Records
BS17223.complete Sequence
512 bp assembled on 2010-02-09
GenBank Submission: KX806497
> BS17223.complete
GAAGTTATCAGTCGACATGGATAAACCCACAACTAGCGCCGCTGCTGCTG
CGGCTCAGGATTCCAACCTTCTTCCGGACTCCCCACAACACGGACCAACG
TTGTCCAGCGCCTCCAGTTTCGAGGCACTGACGCGACACGACCCCAATCT
CAGTCGTTTGGCCACGAAAATGTTCAACAAAACGGAGGAGTACATCACAC
ACGAACTGAACGCTCCGCTGGAGGATTACAAGCTGCTGGAGGAGATGAAC
AAGGCTACGATTGCCAAGTACAAGGATATGCGGCAGATTGCCGAGAATCT
GAATACTTCGACCAGTGAATTGAGCCTTAAGTTCCAGCAATTAGCTCCGA
TGATGCAGCAAATCGATGAGATTTCCGACACCGTCGACAAATTGGAGGCG
GCGGCCTATAAACTGGACGCATACAGCATAGCCCTAGAAAATCGCGTCAA
GTGCGTGCTGCAAAGGAAATCCGGAGGCGGTCAAGTGGCACAATAAAAGC
TTTCTAGACCAT
BS17223.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:02:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Blos2-RA | 480 | CG14145-PA | 1..480 | 17..496 | 2355 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Blos2-RA | 645 | CG14145-RA | 69..548 | 17..496 | 2355 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11061639..11062118 | 17..496 | 2355 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:02:55 has no hits.
BS17223.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:12 Download gff for
BS17223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14145-RA | 1..480 | 17..496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:27 Download gff for
BS17223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14145-RA | 69..546 | 17..494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:49 Download gff for
BS17223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blos2-RA | 69..546 | 17..494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:12 Download gff for
BS17223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14145-RA | 1..480 | 17..496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:41:31 Download gff for
BS17223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Blos2-RA | 69..546 | 17..494 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:31 Download gff for
BS17223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11061639..11062116 | 17..494 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:49 Download gff for
BS17223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11054739..11055216 | 17..494 | 99 | | Plus |
BS17223.3prime Sequence
510 bp (510 high quality bases) assembled on 2007-05-15
> BS17223.3prime
ATGGTCTAGAAAGCTTTTATTGTGCCACTTGACCGCCTCCGGATTTCCTT
TGCAGCACGCACTTGACGCGATTTTCTAGGGCTATGCTGTATGCGTCCAG
TTTATAGGCCGCCGCCTCCAATTTGTCGACGGTGTCGGAAATCTCATCGA
TTTGCTGCATCATCGGAGCTAATTGCTGGAACTTAAGGCTCAATTCACTG
GTCGAAGTATTCAGATTCTCGGCAATCTGCCGCATATCCTTGTACTTGGC
AATCGTAGCCTTGTTCATCTCCTCCAGCAGCTTGTAATCCTCCAGCGGAG
CGTTCAGTTCGTGTGTGATGTACTCCTCCGTTTTGTTGAACATTTTCGTG
GCCAAACGACTGAGATTGGGGTCGTGTCGCGTCAGTGCCTCGAAACTGGA
GGCGCTGGACAACGTTGGTCCGTGTTGTGGGGAGTCCGGAAGAAGGTTGG
AATCCTGAGCCGCAGCAGCAGCGGCGCTAGTTGTGGGTTTATCCATGTCG
ACTGATAACT
BS17223.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:20:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14145-PA | 480 | CG14145-RA | 1..480 | 496..17 | 2325 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:40:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Blos2-RA | 645 | CG14145-RA | 69..548 | 496..17 | 2355 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:40:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11061639..11062118 | 496..17 | 2355 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 23:40:51 has no hits.
BS17223.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:20:57 Download gff for
BS17223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14145-PA | 1..480 | 17..496 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:49:51 Download gff for
BS17223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blos2-RA | 65..555 | 8..499 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:14:13 Download gff for
BS17223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Blos2-RA | 65..555 | 8..499 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:14:13 Download gff for
BS17223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11061635..11062125 | 8..499 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:49:51 Download gff for
BS17223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11054735..11055225 | 8..499 | 98 | | Minus |
BS17223.5prime Sequence
510 bp (510 high quality bases) assembled on 2007-05-15
> BS17223.5prime
GAAGTTATCAGTCGACATGGATAAACCCACAACTAGCGCCGCTGCTGCTG
CGGCTCAGGATTCCAACCTTCTTCCGGACTCCCCACAACACGGACCAACG
TTGTCCAGCGCCTCCAGTTTCGAGGCACTGACGCGACACGACCCCAATCT
CAGTCGTTTGGCCACGAAAATGTTCAACAAAACGGAGGAGTACATCACAC
ACGAACTGAACGCTCCGCTGGAGGATTACAAGCTGCTGGAGGAGATGAAC
AAGGCTACGATTGCCAAGTACAAGGATATGCGGCAGATTGCCGAGAATCT
GAATACTTCGACCAGTGAATTGAGCCTTAAGTTCCAGCAATTAGCTCCGA
TGATGCAGCAAATCGATGAGATTTCCGACACCGTCGACAAATTGGAGGCG
GCGGCCTATAAACTGGACGCATACAGCATAGCCCTAGAAAATCGCGTCAA
GTGCGTGCTGCAAAGGAAATCCGGAGGCGGTCAAGTGGCACAATAAAAGC
TTTCTAGACC
BS17223.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:14:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14145-PA | 480 | CG14145-RA | 1..480 | 17..496 | 2325 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:25:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Blos2-RA | 645 | CG14145-RA | 69..548 | 17..496 | 2355 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:24:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11061639..11062118 | 17..496 | 2355 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:25:01 has no hits.
BS17223.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:14:17 Download gff for
BS17223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14145-PA | 1..480 | 17..496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:16:22 Download gff for
BS17223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blos2-RA | 65..555 | 14..505 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:40:36 Download gff for
BS17223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Blos2-RA | 65..555 | 14..505 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:40:36 Download gff for
BS17223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11061635..11062125 | 14..505 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:16:22 Download gff for
BS17223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11054735..11055225 | 14..505 | 98 | | Plus |
BS17223.pep Sequence
Translation from 16 to 495
> BS17223.pep
MDKPTTSAAAAAAQDSNLLPDSPQHGPTLSSASSFEALTRHDPNLSRLAT
KMFNKTEEYITHELNAPLEDYKLLEEMNKATIAKYKDMRQIAENLNTSTS
ELSLKFQQLAPMMQQIDEISDTVDKLEAAAYKLDAYSIALENRVKCVLQR
KSGGGQVAQ*
BS17223.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:01:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Blos2-PA | 159 | CG14145-PA | 1..159 | 1..159 | 795 | 100 | Plus |