Clone BS17223 Report

Search the DGRC for BS17223

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:172
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptBlos2-RA
Protein status:BS17223.pep: full length peptide match
Sequenced Size:512

Clone Sequence Records

BS17223.complete Sequence

512 bp assembled on 2010-02-09

GenBank Submission: KX806497

> BS17223.complete
GAAGTTATCAGTCGACATGGATAAACCCACAACTAGCGCCGCTGCTGCTG
CGGCTCAGGATTCCAACCTTCTTCCGGACTCCCCACAACACGGACCAACG
TTGTCCAGCGCCTCCAGTTTCGAGGCACTGACGCGACACGACCCCAATCT
CAGTCGTTTGGCCACGAAAATGTTCAACAAAACGGAGGAGTACATCACAC
ACGAACTGAACGCTCCGCTGGAGGATTACAAGCTGCTGGAGGAGATGAAC
AAGGCTACGATTGCCAAGTACAAGGATATGCGGCAGATTGCCGAGAATCT
GAATACTTCGACCAGTGAATTGAGCCTTAAGTTCCAGCAATTAGCTCCGA
TGATGCAGCAAATCGATGAGATTTCCGACACCGTCGACAAATTGGAGGCG
GCGGCCTATAAACTGGACGCATACAGCATAGCCCTAGAAAATCGCGTCAA
GTGCGTGCTGCAAAGGAAATCCGGAGGCGGTCAAGTGGCACAATAAAAGC
TTTCTAGACCAT

BS17223.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:02:56
Subject Length Description Subject Range Query Range Score Percent Strand
Blos2-RA 480 CG14145-PA 1..480 17..496 2355 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:57
Subject Length Description Subject Range Query Range Score Percent Strand
Blos2-RA 645 CG14145-RA 69..548 17..496 2355 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11061639..11062118 17..496 2355 99.4 Plus
Blast to na_te.dros performed on 2014-11-28 03:02:55 has no hits.

BS17223.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:12 Download gff for BS17223.complete
Subject Subject Range Query Range Percent Splice Strand
CG14145-RA 1..480 17..496 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:27 Download gff for BS17223.complete
Subject Subject Range Query Range Percent Splice Strand
CG14145-RA 69..546 17..494 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:49 Download gff for BS17223.complete
Subject Subject Range Query Range Percent Splice Strand
blos2-RA 69..546 17..494 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:12 Download gff for BS17223.complete
Subject Subject Range Query Range Percent Splice Strand
CG14145-RA 1..480 17..496 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:41:31 Download gff for BS17223.complete
Subject Subject Range Query Range Percent Splice Strand
Blos2-RA 69..546 17..494 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:31 Download gff for BS17223.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11061639..11062116 17..494 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:49 Download gff for BS17223.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11054739..11055216 17..494 99   Plus

BS17223.3prime Sequence

510 bp (510 high quality bases) assembled on 2007-05-15

> BS17223.3prime
ATGGTCTAGAAAGCTTTTATTGTGCCACTTGACCGCCTCCGGATTTCCTT
TGCAGCACGCACTTGACGCGATTTTCTAGGGCTATGCTGTATGCGTCCAG
TTTATAGGCCGCCGCCTCCAATTTGTCGACGGTGTCGGAAATCTCATCGA
TTTGCTGCATCATCGGAGCTAATTGCTGGAACTTAAGGCTCAATTCACTG
GTCGAAGTATTCAGATTCTCGGCAATCTGCCGCATATCCTTGTACTTGGC
AATCGTAGCCTTGTTCATCTCCTCCAGCAGCTTGTAATCCTCCAGCGGAG
CGTTCAGTTCGTGTGTGATGTACTCCTCCGTTTTGTTGAACATTTTCGTG
GCCAAACGACTGAGATTGGGGTCGTGTCGCGTCAGTGCCTCGAAACTGGA
GGCGCTGGACAACGTTGGTCCGTGTTGTGGGGAGTCCGGAAGAAGGTTGG
AATCCTGAGCCGCAGCAGCAGCGGCGCTAGTTGTGGGTTTATCCATGTCG
ACTGATAACT

BS17223.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG14145-PA 480 CG14145-RA 1..480 496..17 2325 99.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:40:52
Subject Length Description Subject Range Query Range Score Percent Strand
Blos2-RA 645 CG14145-RA 69..548 496..17 2355 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:40:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11061639..11062118 496..17 2355 99.4 Minus
Blast to na_te.dros performed on 2015-02-12 23:40:51 has no hits.

BS17223.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:20:57 Download gff for BS17223.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14145-PA 1..480 17..496 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:49:51 Download gff for BS17223.3prime
Subject Subject Range Query Range Percent Splice Strand
blos2-RA 65..555 8..499 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:14:13 Download gff for BS17223.3prime
Subject Subject Range Query Range Percent Splice Strand
Blos2-RA 65..555 8..499 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:14:13 Download gff for BS17223.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11061635..11062125 8..499 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:49:51 Download gff for BS17223.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11054735..11055225 8..499 98   Minus

BS17223.5prime Sequence

510 bp (510 high quality bases) assembled on 2007-05-15

> BS17223.5prime
GAAGTTATCAGTCGACATGGATAAACCCACAACTAGCGCCGCTGCTGCTG
CGGCTCAGGATTCCAACCTTCTTCCGGACTCCCCACAACACGGACCAACG
TTGTCCAGCGCCTCCAGTTTCGAGGCACTGACGCGACACGACCCCAATCT
CAGTCGTTTGGCCACGAAAATGTTCAACAAAACGGAGGAGTACATCACAC
ACGAACTGAACGCTCCGCTGGAGGATTACAAGCTGCTGGAGGAGATGAAC
AAGGCTACGATTGCCAAGTACAAGGATATGCGGCAGATTGCCGAGAATCT
GAATACTTCGACCAGTGAATTGAGCCTTAAGTTCCAGCAATTAGCTCCGA
TGATGCAGCAAATCGATGAGATTTCCGACACCGTCGACAAATTGGAGGCG
GCGGCCTATAAACTGGACGCATACAGCATAGCCCTAGAAAATCGCGTCAA
GTGCGTGCTGCAAAGGAAATCCGGAGGCGGTCAAGTGGCACAATAAAAGC
TTTCTAGACC

BS17223.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:14:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG14145-PA 480 CG14145-RA 1..480 17..496 2325 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:25:03
Subject Length Description Subject Range Query Range Score Percent Strand
Blos2-RA 645 CG14145-RA 69..548 17..496 2355 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:24:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11061639..11062118 17..496 2355 99.4 Plus
Blast to na_te.dros performed on 2015-02-13 15:25:01 has no hits.

BS17223.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:14:17 Download gff for BS17223.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14145-PA 1..480 17..496 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:16:22 Download gff for BS17223.5prime
Subject Subject Range Query Range Percent Splice Strand
blos2-RA 65..555 14..505 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:40:36 Download gff for BS17223.5prime
Subject Subject Range Query Range Percent Splice Strand
Blos2-RA 65..555 14..505 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:40:36 Download gff for BS17223.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11061635..11062125 14..505 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:16:22 Download gff for BS17223.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11054735..11055225 14..505 98   Plus

BS17223.pep Sequence

Translation from 16 to 495

> BS17223.pep
MDKPTTSAAAAAAQDSNLLPDSPQHGPTLSSASSFEALTRHDPNLSRLAT
KMFNKTEEYITHELNAPLEDYKLLEEMNKATIAKYKDMRQIAENLNTSTS
ELSLKFQQLAPMMQQIDEISDTVDKLEAAAYKLDAYSIALENRVKCVLQR
KSGGGQVAQ*

BS17223.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:01:20
Subject Length Description Subject Range Query Range Score Percent Strand
Blos2-PA 159 CG14145-PA 1..159 1..159 795 100 Plus