Clone Sequence Records
BS17229.3prime Sequence
459 bp (459 high quality bases) assembled on 2007-05-15
> BS17229.3prime
ATGGTCTAGAAAGCTTTTAGTTAAATATGTTATCGGAAGGTAACTGATCC
ACACCTTTGACATTCCATTTGCAAGAGTCCCGAGTTGTGAGCGTCTTTTG
TGGAGATGTTAGCGAATATGGAACAGGTGTTTCTAGGAAATCAACATTTT
CCAGGCACTTTAGCGAAGCAAACAACTCAACATCCGGGTCTAATTTCAGT
TCAATCTCCTCATGCAGCTCACACGGCTCCTTGCAGATGAACTGCTCGGG
TGCGTTGACCAAGAACCGGACTCCCTCGAGCAGGAGCTTCCTATGAGCGG
GATTATCCACTCCCAGCATGATCAGATCGCTTACGATAATAAGCTTGCAG
CGTTCAATGCTGTCGTACCCCCGCTCCAGGAATTTACCAATGTACTTCTC
CATGGTCAATAGCACCAACCAATCGCGCACAGCCCGTCCACACATGTCGA
CTGATAACT
BS17229.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:21:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17625-PA | 429 | CG17625-RA | 1..429 | 445..17 | 2145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:09:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17625-RA | 559 | CG17625-RA | 56..485 | 445..16 | 2150 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:09:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22686904..22687333 | 445..16 | 2150 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:09:28 has no hits.
BS17229.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:21:21 Download gff for
BS17229.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17625-PA | 1..429 | 17..445 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:18:54 Download gff for
BS17229.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17625-RA | 56..485 | 16..445 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:24:45 Download gff for
BS17229.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17625-RA | 56..485 | 16..445 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:24:45 Download gff for
BS17229.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22686904..22687333 | 16..445 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:18:54 Download gff for
BS17229.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18512626..18513055 | 16..445 | 100 | | Minus |
BS17229.5prime Sequence
459 bp (459 high quality bases) assembled on 2007-05-15
> BS17229.5prime
GAAGTTATCAGTCGACATGTGTGGACGGGCTGTGCGCGATTGGTTGGTGC
TATTGACCATGGAGAAGTACATTGGTAAATTCCTGGAGCGGGGGTACGAC
AGCATTGAACGCTGCAAGCTTATTATCGTAAGCGATCTGATCATGCTGGG
AGTGGATAATCCCGCTCATAGGAAGCTCCTGCTCGAGGGAGTCCGGTTCT
TGGTCAACGCACCCGAGCAGTTCATCTGCAAGGAGCCGTGTGAGCTGCAT
GAGGAGATTGAACTGAAATTAGACCCGGATGTTGAGTTGTTTGCTTCGCT
AAAGTGCCTGGAAAATGTTGATTTCCTAGAAACACCTGTTCCATATTCGC
TAACATCTCCACAAAAGACGCTCACAACTCGGGACTCTTGCAAATGGAAT
GTCAAAGGTGTGGATCAGTTACCTTCCGATAACATATTTAACTAAAAGCT
TTCTAGACC
BS17229.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:14:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17625-PA | 429 | CG17625-RA | 1..429 | 17..445 | 2145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:09:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17625-RA | 559 | CG17625-RA | 56..485 | 17..446 | 2150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:08:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22686904..22687333 | 17..446 | 2150 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 21:09:00 has no hits.
BS17229.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:14:36 Download gff for
BS17229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17625-PA | 1..429 | 17..445 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:29:53 Download gff for
BS17229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17625-RA | 56..485 | 17..446 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:55:22 Download gff for
BS17229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17625-RA | 56..485 | 17..446 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:55:22 Download gff for
BS17229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22686904..22687333 | 17..446 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:29:53 Download gff for
BS17229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18512626..18513055 | 17..446 | 100 | | Plus |
BS17229.complete Sequence
461 bp assembled on 2010-02-09
GenBank Submission: KX803598
> BS17229.complete
GAAGTTATCAGTCGACATGTGTGGACGGGCTGTGCGCGATTGGTTGGTGC
TATTGACCATGGAGAAGTACATTGGTAAATTCCTGGAGCGGGGGTACGAC
AGCATTGAACGCTGCAAGCTTATTATCGTAAGCGATCTGATCATGCTGGG
AGTGGATAATCCCGCTCATAGGAAGCTCCTGCTCGAGGGAGTCCGGTTCT
TGGTCAACGCACCCGAGCAGTTCATCTGCAAGGAGCCGTGTGAGCTGCAT
GAGGAGATTGAACTGAAATTAGACCCGGATGTTGAGTTGTTTGCTTCGCT
AAAGTGCCTGGAAAATGTTGATTTCCTAGAAACACCTGTTCCATATTCGC
TAACATCTCCACAAAAGACGCTCACAACTCGGGACTCTTGCAAATGGAAT
GTCAAAGGTGTGGATCAGTTACCTTCCGATAACATATTTAACTAAAAGCT
TTCTAGACCAT
BS17229.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:00:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17625-RA | 429 | CG17625-PA | 1..429 | 17..445 | 2145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17625-RA | 559 | CG17625-RA | 56..485 | 17..446 | 2150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22686904..22687333 | 17..446 | 2150 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:00:18 has no hits.
BS17229.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:39:04 Download gff for
BS17229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17625-RA | 1..429 | 17..445 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:07 Download gff for
BS17229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17625-RA | 56..482 | 17..443 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:39 Download gff for
BS17229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17625-RA | 56..482 | 17..443 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:39:04 Download gff for
BS17229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17625-RA | 56..485 | 17..446 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:31 Download gff for
BS17229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17625-RA | 56..482 | 17..443 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:31 Download gff for
BS17229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22686904..22687330 | 17..443 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:39 Download gff for
BS17229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18512626..18513052 | 17..443 | 100 | | Plus |
BS17229.pep Sequence
Translation from 16 to 444
> BS17229.pep
MCGRAVRDWLVLLTMEKYIGKFLERGYDSIERCKLIIVSDLIMLGVDNPA
HRKLLLEGVRFLVNAPEQFICKEPCELHEEIELKLDPDVELFASLKCLEN
VDFLETPVPYSLTSPQKTLTTRDSCKWNVKGVDQLPSDNIFN*
BS17229.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:01:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17625-PA | 142 | CG17625-PA | 1..142 | 1..142 | 751 | 100 | Plus |
SKIP-PH | 128 | CG31163-PH | 7..118 | 6..111 | 137 | 36.6 | Plus |