Clone BS17229 Report

Search the DGRC for BS17229

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:172
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptCG17625-RA
Protein status:BS17229.pep: full length peptide match
Sequenced Size:461

Clone Sequence Records

BS17229.3prime Sequence

459 bp (459 high quality bases) assembled on 2007-05-15

> BS17229.3prime
ATGGTCTAGAAAGCTTTTAGTTAAATATGTTATCGGAAGGTAACTGATCC
ACACCTTTGACATTCCATTTGCAAGAGTCCCGAGTTGTGAGCGTCTTTTG
TGGAGATGTTAGCGAATATGGAACAGGTGTTTCTAGGAAATCAACATTTT
CCAGGCACTTTAGCGAAGCAAACAACTCAACATCCGGGTCTAATTTCAGT
TCAATCTCCTCATGCAGCTCACACGGCTCCTTGCAGATGAACTGCTCGGG
TGCGTTGACCAAGAACCGGACTCCCTCGAGCAGGAGCTTCCTATGAGCGG
GATTATCCACTCCCAGCATGATCAGATCGCTTACGATAATAAGCTTGCAG
CGTTCAATGCTGTCGTACCCCCGCTCCAGGAATTTACCAATGTACTTCTC
CATGGTCAATAGCACCAACCAATCGCGCACAGCCCGTCCACACATGTCGA
CTGATAACT

BS17229.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:21:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG17625-PA 429 CG17625-RA 1..429 445..17 2145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:09:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG17625-RA 559 CG17625-RA 56..485 445..16 2150 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:09:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22686904..22687333 445..16 2150 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:09:28 has no hits.

BS17229.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:21:21 Download gff for BS17229.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17625-PA 1..429 17..445 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:18:54 Download gff for BS17229.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17625-RA 56..485 16..445 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:24:45 Download gff for BS17229.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17625-RA 56..485 16..445 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:24:45 Download gff for BS17229.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22686904..22687333 16..445 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:18:54 Download gff for BS17229.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18512626..18513055 16..445 100   Minus

BS17229.5prime Sequence

459 bp (459 high quality bases) assembled on 2007-05-15

> BS17229.5prime
GAAGTTATCAGTCGACATGTGTGGACGGGCTGTGCGCGATTGGTTGGTGC
TATTGACCATGGAGAAGTACATTGGTAAATTCCTGGAGCGGGGGTACGAC
AGCATTGAACGCTGCAAGCTTATTATCGTAAGCGATCTGATCATGCTGGG
AGTGGATAATCCCGCTCATAGGAAGCTCCTGCTCGAGGGAGTCCGGTTCT
TGGTCAACGCACCCGAGCAGTTCATCTGCAAGGAGCCGTGTGAGCTGCAT
GAGGAGATTGAACTGAAATTAGACCCGGATGTTGAGTTGTTTGCTTCGCT
AAAGTGCCTGGAAAATGTTGATTTCCTAGAAACACCTGTTCCATATTCGC
TAACATCTCCACAAAAGACGCTCACAACTCGGGACTCTTGCAAATGGAAT
GTCAAAGGTGTGGATCAGTTACCTTCCGATAACATATTTAACTAAAAGCT
TTCTAGACC

BS17229.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:14:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG17625-PA 429 CG17625-RA 1..429 17..445 2145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:09:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG17625-RA 559 CG17625-RA 56..485 17..446 2150 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22686904..22687333 17..446 2150 100 Plus
Blast to na_te.dros performed on 2015-02-04 21:09:00 has no hits.

BS17229.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:14:36 Download gff for BS17229.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17625-PA 1..429 17..445 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:29:53 Download gff for BS17229.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17625-RA 56..485 17..446 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:55:22 Download gff for BS17229.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17625-RA 56..485 17..446 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:55:22 Download gff for BS17229.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22686904..22687333 17..446 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:29:53 Download gff for BS17229.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18512626..18513055 17..446 100   Plus

BS17229.complete Sequence

461 bp assembled on 2010-02-09

GenBank Submission: KX803598

> BS17229.complete
GAAGTTATCAGTCGACATGTGTGGACGGGCTGTGCGCGATTGGTTGGTGC
TATTGACCATGGAGAAGTACATTGGTAAATTCCTGGAGCGGGGGTACGAC
AGCATTGAACGCTGCAAGCTTATTATCGTAAGCGATCTGATCATGCTGGG
AGTGGATAATCCCGCTCATAGGAAGCTCCTGCTCGAGGGAGTCCGGTTCT
TGGTCAACGCACCCGAGCAGTTCATCTGCAAGGAGCCGTGTGAGCTGCAT
GAGGAGATTGAACTGAAATTAGACCCGGATGTTGAGTTGTTTGCTTCGCT
AAAGTGCCTGGAAAATGTTGATTTCCTAGAAACACCTGTTCCATATTCGC
TAACATCTCCACAAAAGACGCTCACAACTCGGGACTCTTGCAAATGGAAT
GTCAAAGGTGTGGATCAGTTACCTTCCGATAACATATTTAACTAAAAGCT
TTCTAGACCAT

BS17229.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:00:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG17625-RA 429 CG17625-PA 1..429 17..445 2145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG17625-RA 559 CG17625-RA 56..485 17..446 2150 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22686904..22687333 17..446 2150 100 Plus
Blast to na_te.dros performed on 2014-11-28 03:00:18 has no hits.

BS17229.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:39:04 Download gff for BS17229.complete
Subject Subject Range Query Range Percent Splice Strand
CG17625-RA 1..429 17..445 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:07 Download gff for BS17229.complete
Subject Subject Range Query Range Percent Splice Strand
CG17625-RA 56..482 17..443 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:39 Download gff for BS17229.complete
Subject Subject Range Query Range Percent Splice Strand
CG17625-RA 56..482 17..443 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:39:04 Download gff for BS17229.complete
Subject Subject Range Query Range Percent Splice Strand
CG17625-RA 56..485 17..446 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:31 Download gff for BS17229.complete
Subject Subject Range Query Range Percent Splice Strand
CG17625-RA 56..482 17..443 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:31 Download gff for BS17229.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22686904..22687330 17..443 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:39 Download gff for BS17229.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18512626..18513052 17..443 100   Plus

BS17229.pep Sequence

Translation from 16 to 444

> BS17229.pep
MCGRAVRDWLVLLTMEKYIGKFLERGYDSIERCKLIIVSDLIMLGVDNPA
HRKLLLEGVRFLVNAPEQFICKEPCELHEEIELKLDPDVELFASLKCLEN
VDFLETPVPYSLTSPQKTLTTRDSCKWNVKGVDQLPSDNIFN*

BS17229.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:01:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG17625-PA 142 CG17625-PA 1..142 1..142 751 100 Plus
SKIP-PH 128 CG31163-PH 7..118 6..111 137 36.6 Plus