Clone Sequence Records
BS17231.3prime Sequence
186 bp (186 high quality bases) assembled on 2007-05-15
> BS17231.3prime
ATGGTCTAGAAAGCTTTTAACAAGACGGTCCGCAGCTGCTGCAGCATCCG
CCCCCGCAGCAAGGTCCACATGGTCCACTATAGAATCCGCATCGTGGTCC
AAAACAACGGCCACTAAAGCAGGGGCTACAGCAAGGGTAGTAGCAAGTTC
CACAGCAGGGCCCGCAACACATGTCGACTGATAACT
BS17231.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:17:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30430-PA | 156 | CG30430-RA | 1..156 | 172..17 | 780 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:41:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30430-RB | 355 | CG30430-RB | 97..252 | 172..17 | 780 | 100 | Minus |
CG30430-RA | 498 | CG30430-RA | 124..279 | 172..17 | 780 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:40:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 25129611..25129766 | 172..17 | 780 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:41:03 has no hits.
BS17231.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:17:45 Download gff for
BS17231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30430-PA | 1..156 | 17..172 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:16:49 Download gff for
BS17231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30430-RA | 119..282 | 10..177 | 96 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:38:51 Download gff for
BS17231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30430-RA | 119..282 | 10..177 | 96 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:38:51 Download gff for
BS17231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 25129606..25129769 | 10..177 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:16:49 Download gff for
BS17231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 21017129..21017292 | 10..177 | 96 | | Minus |
BS17231.5prime Sequence
186 bp (186 high quality bases) assembled on 2007-05-15
> BS17231.5prime
GAAGTTATCAGTCGACATGTGTTGCGGGCCCTGCTGTGGAACTTGCTACT
ACCCTTGCTGTAGCCCCTGCTTTAGTGGCCGTTGTTTTGGACCACGATGC
GGATTCTATAGTGGACCATGTGGACCTTGCTGCGGGGGCGGATGCTGCAG
CAGCTGCGGACCGTCTTGTTAAAAGCTTTCTAGACC
BS17231.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:11:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30430-PA | 156 | CG30430-RA | 1..156 | 17..172 | 780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:38:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30430-RB | 355 | CG30430-RB | 97..252 | 17..172 | 780 | 100 | Plus |
CG30430-RA | 498 | CG30430-RA | 124..279 | 17..172 | 780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:38:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 25129611..25129766 | 17..172 | 780 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:38:44 has no hits.
BS17231.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:11:05 Download gff for
BS17231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30430-PA | 1..156 | 17..172 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:45:06 Download gff for
BS17231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30430-RA | 119..282 | 12..179 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:45:54 Download gff for
BS17231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30430-RA | 119..282 | 12..179 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:45:54 Download gff for
BS17231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 25129606..25129769 | 12..179 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:45:06 Download gff for
BS17231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 21017129..21017292 | 12..179 | 96 | | Plus |
BS17231.complete Sequence
188 bp assembled on 2012-04-25
GenBank Submission: KX804429
> BS17231.complete
GAAGTTATCAGTCGACATGTGTTGCGGGCCCTGCTGTGGAACTTGCTACT
ACCCTTGCTGTAGCCCCTGCTTTAGTGGCCGTTGTTTTGGACCACGATGC
GGATTCTATAGTGGACCATGTGGACCTTGCTGCGGGGGCGGATGCTGCAG
CAGCTGCGGACCGTCTTGTTAAAAGCTTTCTAGACCAT
BS17231.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:57:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30430-RB | 156 | CG30430-PB | 1..156 | 17..172 | 780 | 100 | Plus |
CG30430-RA | 156 | CG30430-PA | 1..156 | 17..172 | 780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:57:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30430-RB | 355 | CG30430-RB | 97..252 | 17..172 | 780 | 100 | Plus |
CG30430-RA | 498 | CG30430-RA | 124..279 | 17..172 | 780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:57:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 25129611..25129766 | 17..172 | 780 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:57:28 has no hits.
BS17231.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:21 Download gff for
BS17231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30430-RA | 1..156 | 17..172 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:55 Download gff for
BS17231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30430-RA | 124..277 | 17..170 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:16:53 Download gff for
BS17231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30430-RA | 124..277 | 17..170 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:49 Download gff for
BS17231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30430-RA | 124..277 | 17..170 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:18:21 Download gff for
BS17231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30430-RA | 119..282 | 12..179 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:54:16 Download gff for
BS17231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30430-RA | 124..277 | 17..170 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:54:16 Download gff for
BS17231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 25129611..25129764 | 17..170 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:49 Download gff for
BS17231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 21017134..21017287 | 17..170 | 100 | | Plus |
BS17231.pep Sequence
Translation from 16 to 171
> BS17231.pep
MCCGPCCGTCYYPCCSPCFSGRCFGPRCGFYSGPCGPCCGGGCCSSCGPS
C*
BS17231.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:24:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30430-PB | 51 | CG30430-PB | 1..51 | 1..51 | 351 | 100 | Plus |
CG30430-PA | 51 | CG30430-PA | 1..51 | 1..51 | 351 | 100 | Plus |
Mst84Dd-PA | 72 | CG17935-PA | 7..57 | 4..51 | 169 | 58.5 | Plus |
Mst84Dc-PB | 55 | CG17945-PB | 1..53 | 1..47 | 162 | 56.4 | Plus |
Mst84Dc-PA | 55 | CG17945-PA | 1..53 | 1..47 | 162 | 56.4 | Plus |
Mst84Dd-PA | 72 | CG17935-PA | 24..58 | 2..40 | 144 | 61.9 | Plus |