Clone Sequence Records
BS17232.complete Sequence
458 bp assembled on 2010-02-09
GenBank Submission: KX800774
> BS17232.complete
GAAGTTATCAGTCGACATGTCTGCAAGTGATATCGCGGGAATTGAACTCA
CCAGTGGACCGACTGGTCTGAAGAGCAGGATCCTTGTGAGAAACCTTCCG
GTATGCACCCGCCAGGAGCTGGCTTACCTCTGCTTGCCCTTCGGCGAAAT
CCTTGGCTCGCTGGTCACCAATAACCAGGGGTTTATCCAGTTCGCTAGGG
AGAGCGAGGCCAAGCTCGCCATAGAGACGCTCGACCATACTACCTTCAAA
TCTAAGGTTATCCTTGTTTCGAACGCAAGCTTCCGTTCGCTCAACGCCAG
TTGCTTGGGCTATGCTCCCCCGGGGCAGATGATGATCGAGTGGTCTGATG
AGGATGACGTCGATGAATACGATGATTACTCCGAAAGTGATGACGAAGAT
GGCCCGGGAGACATGCAACTGTATAATGCTAATTTTATATAAAAGCTTTC
TAGACCAT
BS17232.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:00:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14628-RA | 426 | CG14628-PA | 1..426 | 17..442 | 2130 | 100 | Plus |
fz3-RB | 1941 | CG16785-PB | 1..347 | 17..360 | 875 | 84.1 | Plus |
CG18823-RA | 321 | CG18823-PA | 24..242 | 58..276 | 495 | 81.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14628-RA | 489 | CG14628-RA | 35..461 | 17..443 | 2135 | 100 | Plus |
fz3-RB | 2304 | CG16785-RB | 64..410 | 17..360 | 875 | 84.1 | Plus |
CG18823-RA | 667 | CG18823-RA | 88..306 | 58..276 | 495 | 81.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1145678..1146104 | 17..443 | 2135 | 100 | Plus |
X | 23542271 | X | 777797..778143 | 17..360 | 875 | 84.1 | Plus |
X | 23542271 | X | 21163547..21163887 | 357..17 | 550 | 77.4 | Minus |
X | 23542271 | X | 21152371..21152711 | 357..17 | 550 | 77.4 | Minus |
X | 23542271 | X | 990605..990823 | 58..276 | 495 | 81.7 | Plus |
U | 3151297 | U | 3102340..3102485 | 17..162 | 415 | 85.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:00:14 has no hits.
BS17232.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:38:43 Download gff for
BS17232.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14628-RA | 1..426 | 17..442 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:06 Download gff for
BS17232.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14628-RA | 35..458 | 17..440 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:37 Download gff for
BS17232.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14628-RA | 35..458 | 17..440 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:38:43 Download gff for
BS17232.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14628-RA | 35..466 | 17..448 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:29 Download gff for
BS17232.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14628-RA | 35..458 | 17..440 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:29 Download gff for
BS17232.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1145678..1146101 | 17..440 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:37 Download gff for
BS17232.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1039711..1040134 | 17..440 | 100 | | Plus |
BS17232.3prime Sequence
456 bp (456 high quality bases) assembled on 2007-05-15
> BS17232.3prime
ATGGTCTAGAAAGCTTTTATATAAAATTAGCATTATACAGTTGCATGTCT
CCCGGGCCATCTTCGTCATCACTTTCGGAGTAATCATCGTATTCATCGAC
GTCATCCTCATCAGACCACTCGATCATCATCTGCCCCGGGGGAGCATAGC
CCAAGCAACTGGCGTTGAGCGAACGGAAGCTTGCGTTCGAAACAAGGATA
ACCTTAGATTTGAAGGTAGTATGGTCGAGCGTCTCTATGGCGAGCTTGGC
CTCGCTCTCCCTAGCGAACTGGATAAACCCCTGGTTATTGGTGACCAGCG
AGCCAAGGATTTCGCCGAAGGGCAAGCAGAGGTAAGCCAGCTCCTGGCGG
GTGCATACCGGAAGGTTTCTCACAAGGATCCTGCTCTTCAGACCAGTCGG
TCCACTGGTGAGTTCAATTCCCGCGATATCACTTGCAGACATGTCGACTG
ATAACT
BS17232.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:17:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14628-PA | 426 | CG14628-RA | 1..426 | 442..17 | 2130 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:27:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14628-RA | 489 | CG14628-RA | 35..461 | 442..16 | 2135 | 100 | Minus |
fz3-RB | 2304 | CG16785-RB | 64..410 | 442..99 | 900 | 84.1 | Minus |
CG18823-RA | 667 | CG18823-RA | 88..306 | 401..183 | 495 | 82.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:27:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1145678..1146104 | 442..16 | 2135 | 100 | Minus |
X | 23542271 | X | 777797..778143 | 442..99 | 875 | 84.1 | Minus |
X | 23542271 | X | 21152371..21152711 | 102..442 | 550 | 77.4 | Plus |
X | 23542271 | X | 21163547..21163887 | 102..442 | 550 | 77.4 | Plus |
X | 23542271 | X | 990605..990823 | 401..183 | 495 | 81.7 | Minus |
U | 3151297 | U | 3102340..3102485 | 442..297 | 415 | 85.6 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:27:22 has no hits.
BS17232.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:17:54 Download gff for
BS17232.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14628-PA | 1..426 | 17..442 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:16:46 Download gff for
BS17232.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14628-RA | 35..466 | 11..442 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:49:31 Download gff for
BS17232.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14628-RA | 35..466 | 11..442 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:49:31 Download gff for
BS17232.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1145678..1146109 | 11..442 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:16:46 Download gff for
BS17232.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1039711..1040142 | 11..442 | 99 | | Minus |
BS17232.5prime Sequence
456 bp (456 high quality bases) assembled on 2007-05-15
> BS17232.5prime
GAAGTTATCAGTCGACATGTCTGCAAGTGATATCGCGGGAATTGAACTCA
CCAGTGGACCGACTGGTCTGAAGAGCAGGATCCTTGTGAGAAACCTTCCG
GTATGCACCCGCCAGGAGCTGGCTTACCTCTGCTTGCCCTTCGGCGAAAT
CCTTGGCTCGCTGGTCACCAATAACCAGGGGTTTATCCAGTTCGCTAGGG
AGAGCGAGGCCAAGCTCGCCATAGAGACGCTCGACCATACTACCTTCAAA
TCTAAGGTTATCCTTGTTTCGAACGCAAGCTTCCGTTCGCTCAACGCCAG
TTGCTTGGGCTATGCTCCCCCGGGGCAGATGATGATCGAGTGGTCTGATG
AGGATGACGTCGATGAATACGATGATTACTCCGAAAGTGATGACGAAGAT
GGCCCGGGAGACATGCAACTGTATAATGCTAATTTTATATAAAAGCTTTC
TAGACC
BS17232.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:11:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14628-PA | 426 | CG14628-RA | 1..426 | 17..442 | 2130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:21:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14628-RA | 489 | CG14628-RA | 35..461 | 17..443 | 2135 | 100 | Plus |
fz3-RB | 2304 | CG16785-RB | 64..410 | 17..360 | 900 | 84.1 | Plus |
CG18823-RA | 667 | CG18823-RA | 88..306 | 58..276 | 495 | 82.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:21:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1145678..1146104 | 17..443 | 2135 | 100 | Plus |
X | 23542271 | X | 777797..778143 | 17..360 | 875 | 84.1 | Plus |
X | 23542271 | X | 21152371..21152711 | 357..17 | 550 | 77.4 | Minus |
X | 23542271 | X | 21163547..21163887 | 357..17 | 550 | 77.4 | Minus |
X | 23542271 | X | 990605..990823 | 58..276 | 495 | 81.7 | Plus |
U | 3151297 | U | 3102340..3102485 | 17..162 | 415 | 85.6 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:21:09 has no hits.
BS17232.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:11:16 Download gff for
BS17232.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14628-PA | 1..426 | 17..442 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:15:48 Download gff for
BS17232.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14628-RA | 35..466 | 17..448 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:05:27 Download gff for
BS17232.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14628-RA | 35..466 | 17..448 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:05:27 Download gff for
BS17232.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1145678..1146109 | 17..448 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:15:48 Download gff for
BS17232.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1039711..1040142 | 17..448 | 99 | | Plus |
BS17232.pep Sequence
Translation from 16 to 441
> BS17232.pep
MSASDIAGIELTSGPTGLKSRILVRNLPVCTRQELAYLCLPFGEILGSLV
TNNQGFIQFARESEAKLAIETLDHTTFKSKVILVSNASFRSLNASCLGYA
PPGQMMIEWSDEDDVDEYDDYSESDDEDGPGDMQLYNANFI*
BS17232.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:00:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14628-PA | 141 | CG14628-PA | 1..141 | 1..141 | 729 | 100 | Plus |
fz3-PB | 646 | CG16785-PB | 1..137 | 1..129 | 439 | 68.6 | Plus |
CG18823-PA | 106 | CG18823-PA | 9..106 | 15..121 | 285 | 57 | Plus |
Neos-PB | 371 | CG8614-PB | 1..97 | 1..97 | 217 | 45.4 | Plus |
Neos-PA | 371 | CG8614-PA | 1..97 | 1..97 | 217 | 45.4 | Plus |