Clone BS17232 Report

Search the DGRC for BS17232

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:172
Well:32
Vector:pDNR-Dual
Associated Gene/TranscriptCG14628-RA
Protein status:BS17232.pep: full length peptide match
Sequenced Size:458

Clone Sequence Records

BS17232.complete Sequence

458 bp assembled on 2010-02-09

GenBank Submission: KX800774

> BS17232.complete
GAAGTTATCAGTCGACATGTCTGCAAGTGATATCGCGGGAATTGAACTCA
CCAGTGGACCGACTGGTCTGAAGAGCAGGATCCTTGTGAGAAACCTTCCG
GTATGCACCCGCCAGGAGCTGGCTTACCTCTGCTTGCCCTTCGGCGAAAT
CCTTGGCTCGCTGGTCACCAATAACCAGGGGTTTATCCAGTTCGCTAGGG
AGAGCGAGGCCAAGCTCGCCATAGAGACGCTCGACCATACTACCTTCAAA
TCTAAGGTTATCCTTGTTTCGAACGCAAGCTTCCGTTCGCTCAACGCCAG
TTGCTTGGGCTATGCTCCCCCGGGGCAGATGATGATCGAGTGGTCTGATG
AGGATGACGTCGATGAATACGATGATTACTCCGAAAGTGATGACGAAGAT
GGCCCGGGAGACATGCAACTGTATAATGCTAATTTTATATAAAAGCTTTC
TAGACCAT

BS17232.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:00:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG14628-RA 426 CG14628-PA 1..426 17..442 2130 100 Plus
fz3-RB 1941 CG16785-PB 1..347 17..360 875 84.1 Plus
CG18823-RA 321 CG18823-PA 24..242 58..276 495 81.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG14628-RA 489 CG14628-RA 35..461 17..443 2135 100 Plus
fz3-RB 2304 CG16785-RB 64..410 17..360 875 84.1 Plus
CG18823-RA 667 CG18823-RA 88..306 58..276 495 81.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1145678..1146104 17..443 2135 100 Plus
X 23542271 X 777797..778143 17..360 875 84.1 Plus
X 23542271 X 21163547..21163887 357..17 550 77.4 Minus
X 23542271 X 21152371..21152711 357..17 550 77.4 Minus
X 23542271 X 990605..990823 58..276 495 81.7 Plus
U 3151297 U 3102340..3102485 17..162 415 85.6 Plus
Blast to na_te.dros performed on 2014-11-28 03:00:14 has no hits.

BS17232.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:38:43 Download gff for BS17232.complete
Subject Subject Range Query Range Percent Splice Strand
CG14628-RA 1..426 17..442 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:06 Download gff for BS17232.complete
Subject Subject Range Query Range Percent Splice Strand
CG14628-RA 35..458 17..440 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:37 Download gff for BS17232.complete
Subject Subject Range Query Range Percent Splice Strand
CG14628-RA 35..458 17..440 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:38:43 Download gff for BS17232.complete
Subject Subject Range Query Range Percent Splice Strand
CG14628-RA 35..466 17..448 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:29 Download gff for BS17232.complete
Subject Subject Range Query Range Percent Splice Strand
CG14628-RA 35..458 17..440 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:29 Download gff for BS17232.complete
Subject Subject Range Query Range Percent Splice Strand
X 1145678..1146101 17..440 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:37 Download gff for BS17232.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1039711..1040134 17..440 100   Plus

BS17232.3prime Sequence

456 bp (456 high quality bases) assembled on 2007-05-15

> BS17232.3prime
ATGGTCTAGAAAGCTTTTATATAAAATTAGCATTATACAGTTGCATGTCT
CCCGGGCCATCTTCGTCATCACTTTCGGAGTAATCATCGTATTCATCGAC
GTCATCCTCATCAGACCACTCGATCATCATCTGCCCCGGGGGAGCATAGC
CCAAGCAACTGGCGTTGAGCGAACGGAAGCTTGCGTTCGAAACAAGGATA
ACCTTAGATTTGAAGGTAGTATGGTCGAGCGTCTCTATGGCGAGCTTGGC
CTCGCTCTCCCTAGCGAACTGGATAAACCCCTGGTTATTGGTGACCAGCG
AGCCAAGGATTTCGCCGAAGGGCAAGCAGAGGTAAGCCAGCTCCTGGCGG
GTGCATACCGGAAGGTTTCTCACAAGGATCCTGCTCTTCAGACCAGTCGG
TCCACTGGTGAGTTCAATTCCCGCGATATCACTTGCAGACATGTCGACTG
ATAACT

BS17232.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:17:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG14628-PA 426 CG14628-RA 1..426 442..17 2130 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:27:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG14628-RA 489 CG14628-RA 35..461 442..16 2135 100 Minus
fz3-RB 2304 CG16785-RB 64..410 442..99 900 84.1 Minus
CG18823-RA 667 CG18823-RA 88..306 401..183 495 82.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:27:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1145678..1146104 442..16 2135 100 Minus
X 23542271 X 777797..778143 442..99 875 84.1 Minus
X 23542271 X 21152371..21152711 102..442 550 77.4 Plus
X 23542271 X 21163547..21163887 102..442 550 77.4 Plus
X 23542271 X 990605..990823 401..183 495 81.7 Minus
U 3151297 U 3102340..3102485 442..297 415 85.6 Minus
Blast to na_te.dros performed on 2015-02-13 15:27:22 has no hits.

BS17232.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:17:54 Download gff for BS17232.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14628-PA 1..426 17..442 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:16:46 Download gff for BS17232.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14628-RA 35..466 11..442 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:49:31 Download gff for BS17232.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14628-RA 35..466 11..442 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:49:31 Download gff for BS17232.3prime
Subject Subject Range Query Range Percent Splice Strand
X 1145678..1146109 11..442 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:16:46 Download gff for BS17232.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1039711..1040142 11..442 99   Minus

BS17232.5prime Sequence

456 bp (456 high quality bases) assembled on 2007-05-15

> BS17232.5prime
GAAGTTATCAGTCGACATGTCTGCAAGTGATATCGCGGGAATTGAACTCA
CCAGTGGACCGACTGGTCTGAAGAGCAGGATCCTTGTGAGAAACCTTCCG
GTATGCACCCGCCAGGAGCTGGCTTACCTCTGCTTGCCCTTCGGCGAAAT
CCTTGGCTCGCTGGTCACCAATAACCAGGGGTTTATCCAGTTCGCTAGGG
AGAGCGAGGCCAAGCTCGCCATAGAGACGCTCGACCATACTACCTTCAAA
TCTAAGGTTATCCTTGTTTCGAACGCAAGCTTCCGTTCGCTCAACGCCAG
TTGCTTGGGCTATGCTCCCCCGGGGCAGATGATGATCGAGTGGTCTGATG
AGGATGACGTCGATGAATACGATGATTACTCCGAAAGTGATGACGAAGAT
GGCCCGGGAGACATGCAACTGTATAATGCTAATTTTATATAAAAGCTTTC
TAGACC

BS17232.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:11:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG14628-PA 426 CG14628-RA 1..426 17..442 2130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:21:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG14628-RA 489 CG14628-RA 35..461 17..443 2135 100 Plus
fz3-RB 2304 CG16785-RB 64..410 17..360 900 84.1 Plus
CG18823-RA 667 CG18823-RA 88..306 58..276 495 82.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:21:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1145678..1146104 17..443 2135 100 Plus
X 23542271 X 777797..778143 17..360 875 84.1 Plus
X 23542271 X 21152371..21152711 357..17 550 77.4 Minus
X 23542271 X 21163547..21163887 357..17 550 77.4 Minus
X 23542271 X 990605..990823 58..276 495 81.7 Plus
U 3151297 U 3102340..3102485 17..162 415 85.6 Plus
Blast to na_te.dros performed on 2015-02-13 15:21:09 has no hits.

BS17232.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:11:16 Download gff for BS17232.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14628-PA 1..426 17..442 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:15:48 Download gff for BS17232.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14628-RA 35..466 17..448 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:05:27 Download gff for BS17232.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14628-RA 35..466 17..448 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:05:27 Download gff for BS17232.5prime
Subject Subject Range Query Range Percent Splice Strand
X 1145678..1146109 17..448 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:15:48 Download gff for BS17232.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1039711..1040142 17..448 99   Plus

BS17232.pep Sequence

Translation from 16 to 441

> BS17232.pep
MSASDIAGIELTSGPTGLKSRILVRNLPVCTRQELAYLCLPFGEILGSLV
TNNQGFIQFARESEAKLAIETLDHTTFKSKVILVSNASFRSLNASCLGYA
PPGQMMIEWSDEDDVDEYDDYSESDDEDGPGDMQLYNANFI*

BS17232.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:00:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG14628-PA 141 CG14628-PA 1..141 1..141 729 100 Plus
fz3-PB 646 CG16785-PB 1..137 1..129 439 68.6 Plus
CG18823-PA 106 CG18823-PA 9..106 15..121 285 57 Plus
Neos-PB 371 CG8614-PB 1..97 1..97 217 45.4 Plus
Neos-PA 371 CG8614-PA 1..97 1..97 217 45.4 Plus