Clone Sequence Records
BS17233.complete Sequence
464 bp assembled on 2010-02-09
GenBank Submission: KX802306
> BS17233.complete
GAAGTTATCAGTCGACATGGGAACTCGCAAGAAGGGACTCGAATTCGCTA
AACACATCACCGAGATTATCAACAAGTCAACGGGCTTTGAAAGTCACCTA
CAGAAGGTCAAGATCGTAGACGGTGGCGATGGAGCCTGCACTGCTGAGCT
AAAGGTGGACCAGGATCATGTGAACTTGTACAAGTTTTTGCACGGCGGTT
ATATCATGACCCTGGTGGACTTGATAACCACCTACGCCCTAATGTCCAAG
CCATGTCATCCCGGAGTTTCGGTAGATCTTAGTGTAAACTTTCTAAACGG
CGCCAAACTGGGCGACGATGTGGTGATTCAGGCCAATCTGTCCAAGGTGG
GCAAGTACCTTGCCTTCATCGATTGCACCCTGAAGCACAAGAAGGACGAC
TTGGTGATAGCCAAGGGCACACATCTAAAGTATATCAAATTTGACTAGAA
GCTTTCTAGACCAT
BS17233.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:00:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16986-RB | 432 | CG16986-PB | 1..432 | 17..448 | 2160 | 100 | Plus |
CG16986-RA | 432 | CG16986-PA | 1..432 | 17..448 | 2160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16986-RB | 694 | CG16986-RB | 164..596 | 17..449 | 2165 | 100 | Plus |
CG16986-RA | 769 | CG16986-RA | 164..596 | 17..449 | 2165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2601018..2601363 | 104..449 | 1730 | 100 | Plus |
3L | 28110227 | 3L | 2600870..2600961 | 17..108 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:00:43 has no hits.
BS17233.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:24:07 Download gff for
BS17233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16986-RA | 1..432 | 17..448 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:10 Download gff for
BS17233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16986-RA | 1..432 | 17..448 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:51 Download gff for
BS17233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16986-RA | 164..595 | 17..448 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:24:07 Download gff for
BS17233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16986-RA | 1..432 | 17..448 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:41 Download gff for
BS17233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16986-RA | 164..595 | 17..448 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:41 Download gff for
BS17233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2600870..2600959 | 17..106 | 100 | -> | Plus |
3L | 2601021..2601362 | 107..448 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:51 Download gff for
BS17233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2600870..2600959 | 17..106 | 100 | -> | Plus |
arm_3L | 2601021..2601362 | 107..448 | 100 | | Plus |
BS17233.3prime Sequence
462 bp (462 high quality bases) assembled on 2007-05-15
> BS17233.3prime
ATGGTCTAGAAAGCTTCTAGTCAAATTTGATATACTTTAGATGTGTGCCC
TTGGCTATCACCAAGTCGTCCTTCTTGTGCTTCAGGGTGCAATCGATGAA
GGCAAGGTACTTGCCCACCTTGGACAGATTGGCCTGAATCACCACATCGT
CGCCCAGTTTGGCGCCGTTTAGAAAGTTTACACTAAGATCTACCGAAACT
CCGGGATGACATGGCTTGGACATTAGGGCGTAGGTGGTTATCAAGTCCAC
CAGGGTCATGATATAACCGCCGTGCAAAAACTTGTACAAGTTCACATGAT
CCTGGTCCACCTTTAGCTCAGCAGTGCAGGCTCCATCGCCACCGTCTACG
ATCTTGACCTTCTGTAGGTGACTTTCAAAGCCCGTTGACTTGTTGATAAT
CTCGGTGATGTGTTTAGCGAATTCGAGTCCCTTCTTGCGAGTTCCCATGT
CGACTGATAACT
BS17233.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:18:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16986-PA | 432 | CG16986-RA | 1..432 | 448..17 | 2160 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:13:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16986-RB | 694 | CG16986-RB | 164..596 | 448..16 | 2165 | 100 | Minus |
CG16986-RA | 769 | CG16986-RA | 164..596 | 448..16 | 2165 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:13:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2601018..2601363 | 361..16 | 1730 | 100 | Minus |
3L | 28110227 | 3L | 2600870..2600961 | 448..357 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:13:08 has no hits.
BS17233.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:18:03 Download gff for
BS17233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16986-PA | 1..432 | 17..448 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:17:37 Download gff for
BS17233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16986-RA | 164..598 | 12..448 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:26:51 Download gff for
BS17233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16986-RA | 164..598 | 12..448 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:26:51 Download gff for
BS17233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2600870..2600959 | 359..448 | 100 | -> | Minus |
3L | 2601021..2601365 | 12..358 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:17:37 Download gff for
BS17233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2600870..2600959 | 359..448 | 100 | -> | Minus |
arm_3L | 2601021..2601365 | 12..358 | 99 | | Minus |
BS17233.5prime Sequence
462 bp (462 high quality bases) assembled on 2007-05-15
> BS17233.5prime
GAAGTTATCAGTCGACATGGGAACTCGCAAGAAGGGACTCGAATTCGCTA
AACACATCACCGAGATTATCAACAAGTCAACGGGCTTTGAAAGTCACCTA
CAGAAGGTCAAGATCGTAGACGGTGGCGATGGAGCCTGCACTGCTGAGCT
AAAGGTGGACCAGGATCATGTGAACTTGTACAAGTTTTTGCACGGCGGTT
ATATCATGACCCTGGTGGACTTGATAACCACCTACGCCCTAATGTCCAAG
CCATGTCATCCCGGAGTTTCGGTAGATCTTAGTGTAAACTTTCTAAACGG
CGCCAAACTGGGCGACGATGTGGTGATTCAGGCCAATCTGTCCAAGGTGG
GCAAGTACCTTGCCTTCATCGATTGCACCCTGAAGCACAAGAAGGACGAC
TTGGTGATAGCCAAGGGCACACATCTAAAGTATATCAAATTTGACTAGAA
GCTTTCTAGACC
BS17233.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:11:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16986-PA | 432 | CG16986-RA | 1..432 | 17..448 | 2160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:11:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16986-RB | 694 | CG16986-RB | 164..596 | 17..449 | 2165 | 100 | Plus |
CG16986-RA | 769 | CG16986-RA | 164..596 | 17..449 | 2165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:11:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2601018..2601363 | 104..449 | 1730 | 100 | Plus |
3L | 28110227 | 3L | 2600870..2600961 | 17..108 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:11:37 has no hits.
BS17233.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:11:25 Download gff for
BS17233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16986-PA | 1..432 | 17..448 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:40:54 Download gff for
BS17233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16986-RA | 164..598 | 17..453 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:29:43 Download gff for
BS17233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16986-RA | 164..598 | 17..453 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:29:43 Download gff for
BS17233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2601021..2601365 | 107..453 | 99 | | Plus |
3L | 2600870..2600959 | 17..106 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:40:54 Download gff for
BS17233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2600870..2600959 | 17..106 | 100 | -> | Plus |
arm_3L | 2601021..2601365 | 107..453 | 99 | | Plus |
BS17233.pep Sequence
Translation from 16 to 447
> BS17233.pep
MGTRKKGLEFAKHITEIINKSTGFESHLQKVKIVDGGDGACTAELKVDQD
HVNLYKFLHGGYIMTLVDLITTYALMSKPCHPGVSVDLSVNFLNGAKLGD
DVVIQANLSKVGKYLAFIDCTLKHKKDDLVIAKGTHLKYIKFD*
BS17233.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:02:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16986-PB | 143 | CG16986-PB | 1..143 | 1..143 | 746 | 100 | Plus |
CG16986-PA | 143 | CG16986-PA | 1..143 | 1..143 | 746 | 100 | Plus |
CG16985-PA | 149 | CG16985-PA | 1..143 | 1..143 | 330 | 44.1 | Plus |