Clone BS17233 Report

Search the DGRC for BS17233

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:172
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptCG16986-RA
Protein status:BS17233.pep: full length peptide match
Sequenced Size:464

Clone Sequence Records

BS17233.complete Sequence

464 bp assembled on 2010-02-09

GenBank Submission: KX802306

> BS17233.complete
GAAGTTATCAGTCGACATGGGAACTCGCAAGAAGGGACTCGAATTCGCTA
AACACATCACCGAGATTATCAACAAGTCAACGGGCTTTGAAAGTCACCTA
CAGAAGGTCAAGATCGTAGACGGTGGCGATGGAGCCTGCACTGCTGAGCT
AAAGGTGGACCAGGATCATGTGAACTTGTACAAGTTTTTGCACGGCGGTT
ATATCATGACCCTGGTGGACTTGATAACCACCTACGCCCTAATGTCCAAG
CCATGTCATCCCGGAGTTTCGGTAGATCTTAGTGTAAACTTTCTAAACGG
CGCCAAACTGGGCGACGATGTGGTGATTCAGGCCAATCTGTCCAAGGTGG
GCAAGTACCTTGCCTTCATCGATTGCACCCTGAAGCACAAGAAGGACGAC
TTGGTGATAGCCAAGGGCACACATCTAAAGTATATCAAATTTGACTAGAA
GCTTTCTAGACCAT

BS17233.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:00:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG16986-RB 432 CG16986-PB 1..432 17..448 2160 100 Plus
CG16986-RA 432 CG16986-PA 1..432 17..448 2160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG16986-RB 694 CG16986-RB 164..596 17..449 2165 100 Plus
CG16986-RA 769 CG16986-RA 164..596 17..449 2165 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2601018..2601363 104..449 1730 100 Plus
3L 28110227 3L 2600870..2600961 17..108 460 100 Plus
Blast to na_te.dros performed on 2014-11-28 03:00:43 has no hits.

BS17233.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:24:07 Download gff for BS17233.complete
Subject Subject Range Query Range Percent Splice Strand
CG16986-RA 1..432 17..448 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:10 Download gff for BS17233.complete
Subject Subject Range Query Range Percent Splice Strand
CG16986-RA 1..432 17..448 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:51 Download gff for BS17233.complete
Subject Subject Range Query Range Percent Splice Strand
CG16986-RA 164..595 17..448 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:24:07 Download gff for BS17233.complete
Subject Subject Range Query Range Percent Splice Strand
CG16986-RA 1..432 17..448 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:41 Download gff for BS17233.complete
Subject Subject Range Query Range Percent Splice Strand
CG16986-RA 164..595 17..448 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:41 Download gff for BS17233.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2600870..2600959 17..106 100 -> Plus
3L 2601021..2601362 107..448 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:51 Download gff for BS17233.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2600870..2600959 17..106 100 -> Plus
arm_3L 2601021..2601362 107..448 100   Plus

BS17233.3prime Sequence

462 bp (462 high quality bases) assembled on 2007-05-15

> BS17233.3prime
ATGGTCTAGAAAGCTTCTAGTCAAATTTGATATACTTTAGATGTGTGCCC
TTGGCTATCACCAAGTCGTCCTTCTTGTGCTTCAGGGTGCAATCGATGAA
GGCAAGGTACTTGCCCACCTTGGACAGATTGGCCTGAATCACCACATCGT
CGCCCAGTTTGGCGCCGTTTAGAAAGTTTACACTAAGATCTACCGAAACT
CCGGGATGACATGGCTTGGACATTAGGGCGTAGGTGGTTATCAAGTCCAC
CAGGGTCATGATATAACCGCCGTGCAAAAACTTGTACAAGTTCACATGAT
CCTGGTCCACCTTTAGCTCAGCAGTGCAGGCTCCATCGCCACCGTCTACG
ATCTTGACCTTCTGTAGGTGACTTTCAAAGCCCGTTGACTTGTTGATAAT
CTCGGTGATGTGTTTAGCGAATTCGAGTCCCTTCTTGCGAGTTCCCATGT
CGACTGATAACT

BS17233.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:18:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG16986-PA 432 CG16986-RA 1..432 448..17 2160 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:13:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG16986-RB 694 CG16986-RB 164..596 448..16 2165 100 Minus
CG16986-RA 769 CG16986-RA 164..596 448..16 2165 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:13:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2601018..2601363 361..16 1730 100 Minus
3L 28110227 3L 2600870..2600961 448..357 460 100 Minus
Blast to na_te.dros performed on 2015-02-12 16:13:08 has no hits.

BS17233.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:18:03 Download gff for BS17233.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16986-PA 1..432 17..448 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:17:37 Download gff for BS17233.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16986-RA 164..598 12..448 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:26:51 Download gff for BS17233.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16986-RA 164..598 12..448 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:26:51 Download gff for BS17233.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 2600870..2600959 359..448 100 -> Minus
3L 2601021..2601365 12..358 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:17:37 Download gff for BS17233.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2600870..2600959 359..448 100 -> Minus
arm_3L 2601021..2601365 12..358 99   Minus

BS17233.5prime Sequence

462 bp (462 high quality bases) assembled on 2007-05-15

> BS17233.5prime
GAAGTTATCAGTCGACATGGGAACTCGCAAGAAGGGACTCGAATTCGCTA
AACACATCACCGAGATTATCAACAAGTCAACGGGCTTTGAAAGTCACCTA
CAGAAGGTCAAGATCGTAGACGGTGGCGATGGAGCCTGCACTGCTGAGCT
AAAGGTGGACCAGGATCATGTGAACTTGTACAAGTTTTTGCACGGCGGTT
ATATCATGACCCTGGTGGACTTGATAACCACCTACGCCCTAATGTCCAAG
CCATGTCATCCCGGAGTTTCGGTAGATCTTAGTGTAAACTTTCTAAACGG
CGCCAAACTGGGCGACGATGTGGTGATTCAGGCCAATCTGTCCAAGGTGG
GCAAGTACCTTGCCTTCATCGATTGCACCCTGAAGCACAAGAAGGACGAC
TTGGTGATAGCCAAGGGCACACATCTAAAGTATATCAAATTTGACTAGAA
GCTTTCTAGACC

BS17233.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:11:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG16986-PA 432 CG16986-RA 1..432 17..448 2160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:11:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG16986-RB 694 CG16986-RB 164..596 17..449 2165 100 Plus
CG16986-RA 769 CG16986-RA 164..596 17..449 2165 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:11:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2601018..2601363 104..449 1730 100 Plus
3L 28110227 3L 2600870..2600961 17..108 460 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:11:37 has no hits.

BS17233.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:11:25 Download gff for BS17233.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16986-PA 1..432 17..448 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:40:54 Download gff for BS17233.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16986-RA 164..598 17..453 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:29:43 Download gff for BS17233.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16986-RA 164..598 17..453 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:29:43 Download gff for BS17233.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 2601021..2601365 107..453 99   Plus
3L 2600870..2600959 17..106 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:40:54 Download gff for BS17233.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2600870..2600959 17..106 100 -> Plus
arm_3L 2601021..2601365 107..453 99   Plus

BS17233.pep Sequence

Translation from 16 to 447

> BS17233.pep
MGTRKKGLEFAKHITEIINKSTGFESHLQKVKIVDGGDGACTAELKVDQD
HVNLYKFLHGGYIMTLVDLITTYALMSKPCHPGVSVDLSVNFLNGAKLGD
DVVIQANLSKVGKYLAFIDCTLKHKKDDLVIAKGTHLKYIKFD*

BS17233.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG16986-PB 143 CG16986-PB 1..143 1..143 746 100 Plus
CG16986-PA 143 CG16986-PA 1..143 1..143 746 100 Plus
CG16985-PA 149 CG16985-PA 1..143 1..143 330 44.1 Plus