Clone Sequence Records
BS17238.complete Sequence
413 bp assembled on 2010-02-09
GenBank Submission: KX805441
> BS17238.complete
GAAGTTATCAGTCGACATGAATCCAAATTCACGGTGCCTCGCGCTGCTAT
TCGTTGCGTTATCCTTTCTAGCTCAGGGCTTTTTCGACAGTTACAGAAGT
CCAAAGGAGTCAGCCGGTCTGGCCACTCTCTGTCAAGAAATTCAAAAGAT
CCAAGATGACTTTGTGCATCTGGCAGATAATTGCTCCATAGAGAAACTGA
CGGTGAACGACTCCCTGGAGTATCTGCAGATCAGTTGCCATGTGGATGAT
CTTCCAGAGGGCTACGAGCGGAGACTGAAACCCGTCGACTATGGCCGGAG
TTTCTTCCTCAACCAACGGATGCCGAAGCCTTTGAAGCGCCAGTGGAATT
TCCGAGTGCCCACAGACGCCGTGAATGGACTCAGTCTGCTGACTTGAAAG
CTTTCTAGACCAT
BS17238.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:59:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14974-RA | 381 | CG14974-PA | 1..381 | 17..397 | 1905 | 100 | Plus |
CG14974-RC | 378 | CG14974-PC | 1..378 | 17..397 | 1825 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14974-RA | 491 | CG14974-RA | 68..448 | 17..397 | 1905 | 100 | Plus |
CG14974-RC | 488 | CG14974-RC | 68..445 | 17..397 | 1825 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3620476..3620691 | 397..182 | 1080 | 100 | Minus |
3L | 28110227 | 3L | 3620872..3620965 | 110..17 | 470 | 100 | Minus |
3L | 28110227 | 3L | 3620742..3620812 | 181..111 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:59:46 has no hits.
BS17238.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:00 Download gff for
BS17238.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14974-RA | 1..381 | 17..397 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:01 Download gff for
BS17238.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14974-RA | 53..432 | 17..396 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:22 Download gff for
BS17238.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14974-RA | 68..447 | 17..396 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:00 Download gff for
BS17238.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14974-RA | 37..423 | 17..403 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:20 Download gff for
BS17238.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14974-RA | 68..447 | 17..396 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:20 Download gff for
BS17238.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3620477..3620691 | 182..396 | 100 | <- | Minus |
3L | 3620742..3620812 | 111..181 | 100 | <- | Minus |
3L | 3620872..3620965 | 17..110 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:22 Download gff for
BS17238.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3620872..3620965 | 17..110 | 100 | | Minus |
arm_3L | 3620477..3620691 | 182..396 | 100 | <- | Minus |
arm_3L | 3620742..3620812 | 111..181 | 100 | <- | Minus |
BS17238.3prime Sequence
411 bp (411 high quality bases) assembled on 2007-05-15
> BS17238.3prime
ATGGTCTAGAAAGCTTTCAAGTCAGCAGACTGAGTCCATTCACGGCGTCT
GTGGGCACTCGGAAATTCCACTGGCGCTTCAAAGGCTTCGGCATCCGTTG
GTTGAGGAAGAAACTCCGGCCATAGTCGACGGGTTTCAGTCTCCGCTCGT
AGCCCTCTGGAAGATCATCCACATGGCAACTGATCTGCAGATACTCCAGG
GAGTCGTTCACCGTCAGTTTCTCTATGGAGCAATTATCTGCCAGATGCAC
AAAGTCATCTTGGATCTTTTGAATTTCTTGACAGAGAGTGGCCAGACCGG
CTGACTCCTTTGGACTTCTGTAACTGTCGAAAAAGCCCTGAGCTAGAAAG
GATAACGCAACGAATAGCAGCGCGAGGCACCGTGAATTTGGATTCATGTC
GACTGATAACT
BS17238.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:18:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14974-PA | 381 | CG14974-RA | 1..381 | 397..17 | 1905 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:13:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14974-RA | 491 | CG14974-RA | 68..448 | 397..17 | 1905 | 100 | Minus |
CG14974-RC | 488 | CG14974-RC | 68..445 | 397..17 | 1850 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:13:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3620476..3620691 | 17..232 | 1080 | 100 | Plus |
3L | 28110227 | 3L | 3620872..3620965 | 304..397 | 470 | 100 | Plus |
3L | 28110227 | 3L | 3620742..3620812 | 233..303 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:13:50 has no hits.
BS17238.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:18:15 Download gff for
BS17238.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14974-PA | 1..381 | 17..397 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:17:39 Download gff for
BS17238.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14974-RA | 68..454 | 11..397 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:27:35 Download gff for
BS17238.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14974-RA | 68..454 | 11..397 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:27:35 Download gff for
BS17238.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3620470..3620691 | 11..232 | 98 | <- | Plus |
3L | 3620742..3620812 | 233..303 | 100 | <- | Plus |
3L | 3620872..3620965 | 304..397 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:17:39 Download gff for
BS17238.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3620470..3620691 | 11..232 | 98 | <- | Plus |
arm_3L | 3620742..3620812 | 233..303 | 100 | <- | Plus |
arm_3L | 3620872..3620965 | 304..397 | 100 | | Plus |
BS17238.5prime Sequence
411 bp (411 high quality bases) assembled on 2007-05-15
> BS17238.5prime
GAAGTTATCAGTCGACATGAATCCAAATTCACGGTGCCTCGCGCTGCTAT
TCGTTGCGTTATCCTTTCTAGCTCAGGGCTTTTTCGACAGTTACAGAAGT
CCAAAGGAGTCAGCCGGTCTGGCCACTCTCTGTCAAGAAATTCAAAAGAT
CCAAGATGACTTTGTGCATCTGGCAGATAATTGCTCCATAGAGAAACTGA
CGGTGAACGACTCCCTGGAGTATCTGCAGATCAGTTGCCATGTGGATGAT
CTTCCAGAGGGCTACGAGCGGAGACTGAAACCCGTCGACTATGGCCGGAG
TTTCTTCCTCAACCAACGGATGCCGAAGCCTTTGAAGCGCCAGTGGAATT
TCCGAGTGCCCACAGACGCCGTGAATGGACTCAGTCTGCTGACTTGAAAG
CTTTCTAGACC
BS17238.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:11:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14974-PA | 381 | CG14974-RA | 1..381 | 17..397 | 1905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:29:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14974-RA | 491 | CG14974-RA | 68..448 | 17..397 | 1905 | 100 | Plus |
CG14974-RC | 488 | CG14974-RC | 68..445 | 17..397 | 1850 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:29:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3620476..3620691 | 397..182 | 1080 | 100 | Minus |
3L | 28110227 | 3L | 3620872..3620965 | 110..17 | 470 | 100 | Minus |
3L | 28110227 | 3L | 3620742..3620812 | 181..111 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:29:39 has no hits.
BS17238.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:11:39 Download gff for
BS17238.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14974-PA | 1..381 | 17..397 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:49:17 Download gff for
BS17238.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14974-RA | 68..454 | 17..403 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:10:19 Download gff for
BS17238.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14974-RA | 68..454 | 17..403 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:10:19 Download gff for
BS17238.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3620470..3620691 | 182..403 | 98 | <- | Minus |
3L | 3620742..3620812 | 111..181 | 100 | <- | Minus |
3L | 3620872..3620965 | 17..110 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:49:17 Download gff for
BS17238.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3620470..3620691 | 182..403 | 98 | <- | Minus |
arm_3L | 3620742..3620812 | 111..181 | 100 | <- | Minus |
arm_3L | 3620872..3620965 | 17..110 | 100 | | Minus |
BS17238.pep Sequence
Translation from 16 to 396
> BS17238.pep
MNPNSRCLALLFVALSFLAQGFFDSYRSPKESAGLATLCQEIQKIQDDFV
HLADNCSIEKLTVNDSLEYLQISCHVDDLPEGYERRLKPVDYGRSFFLNQ
RMPKPLKRQWNFRVPTDAVNGLSLLT*
BS17238.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:59:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14974-PA | 126 | CG14974-PA | 1..126 | 1..126 | 663 | 100 | Plus |
CG14974-PC | 125 | CG14974-PC | 1..125 | 1..126 | 647 | 99.2 | Plus |