Clone BS17238 Report

Search the DGRC for BS17238

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:172
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptCG14974-RA
Protein status:BS17238.pep: full length peptide match
Sequenced Size:413

Clone Sequence Records

BS17238.complete Sequence

413 bp assembled on 2010-02-09

GenBank Submission: KX805441

> BS17238.complete
GAAGTTATCAGTCGACATGAATCCAAATTCACGGTGCCTCGCGCTGCTAT
TCGTTGCGTTATCCTTTCTAGCTCAGGGCTTTTTCGACAGTTACAGAAGT
CCAAAGGAGTCAGCCGGTCTGGCCACTCTCTGTCAAGAAATTCAAAAGAT
CCAAGATGACTTTGTGCATCTGGCAGATAATTGCTCCATAGAGAAACTGA
CGGTGAACGACTCCCTGGAGTATCTGCAGATCAGTTGCCATGTGGATGAT
CTTCCAGAGGGCTACGAGCGGAGACTGAAACCCGTCGACTATGGCCGGAG
TTTCTTCCTCAACCAACGGATGCCGAAGCCTTTGAAGCGCCAGTGGAATT
TCCGAGTGCCCACAGACGCCGTGAATGGACTCAGTCTGCTGACTTGAAAG
CTTTCTAGACCAT

BS17238.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:59:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG14974-RA 381 CG14974-PA 1..381 17..397 1905 100 Plus
CG14974-RC 378 CG14974-PC 1..378 17..397 1825 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG14974-RA 491 CG14974-RA 68..448 17..397 1905 100 Plus
CG14974-RC 488 CG14974-RC 68..445 17..397 1825 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3620476..3620691 397..182 1080 100 Minus
3L 28110227 3L 3620872..3620965 110..17 470 100 Minus
3L 28110227 3L 3620742..3620812 181..111 355 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:59:46 has no hits.

BS17238.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:00 Download gff for BS17238.complete
Subject Subject Range Query Range Percent Splice Strand
CG14974-RA 1..381 17..397 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:01 Download gff for BS17238.complete
Subject Subject Range Query Range Percent Splice Strand
CG14974-RA 53..432 17..396 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:22 Download gff for BS17238.complete
Subject Subject Range Query Range Percent Splice Strand
CG14974-RA 68..447 17..396 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:00 Download gff for BS17238.complete
Subject Subject Range Query Range Percent Splice Strand
CG14974-RA 37..423 17..403 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:20 Download gff for BS17238.complete
Subject Subject Range Query Range Percent Splice Strand
CG14974-RA 68..447 17..396 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:20 Download gff for BS17238.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3620477..3620691 182..396 100 <- Minus
3L 3620742..3620812 111..181 100 <- Minus
3L 3620872..3620965 17..110 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:22 Download gff for BS17238.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3620872..3620965 17..110 100   Minus
arm_3L 3620477..3620691 182..396 100 <- Minus
arm_3L 3620742..3620812 111..181 100 <- Minus

BS17238.3prime Sequence

411 bp (411 high quality bases) assembled on 2007-05-15

> BS17238.3prime
ATGGTCTAGAAAGCTTTCAAGTCAGCAGACTGAGTCCATTCACGGCGTCT
GTGGGCACTCGGAAATTCCACTGGCGCTTCAAAGGCTTCGGCATCCGTTG
GTTGAGGAAGAAACTCCGGCCATAGTCGACGGGTTTCAGTCTCCGCTCGT
AGCCCTCTGGAAGATCATCCACATGGCAACTGATCTGCAGATACTCCAGG
GAGTCGTTCACCGTCAGTTTCTCTATGGAGCAATTATCTGCCAGATGCAC
AAAGTCATCTTGGATCTTTTGAATTTCTTGACAGAGAGTGGCCAGACCGG
CTGACTCCTTTGGACTTCTGTAACTGTCGAAAAAGCCCTGAGCTAGAAAG
GATAACGCAACGAATAGCAGCGCGAGGCACCGTGAATTTGGATTCATGTC
GACTGATAACT

BS17238.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:18:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG14974-PA 381 CG14974-RA 1..381 397..17 1905 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:13:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG14974-RA 491 CG14974-RA 68..448 397..17 1905 100 Minus
CG14974-RC 488 CG14974-RC 68..445 397..17 1850 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3620476..3620691 17..232 1080 100 Plus
3L 28110227 3L 3620872..3620965 304..397 470 100 Plus
3L 28110227 3L 3620742..3620812 233..303 355 100 Plus
Blast to na_te.dros performed on 2015-02-12 16:13:50 has no hits.

BS17238.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:18:15 Download gff for BS17238.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14974-PA 1..381 17..397 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:17:39 Download gff for BS17238.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14974-RA 68..454 11..397 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:27:35 Download gff for BS17238.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14974-RA 68..454 11..397 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:27:35 Download gff for BS17238.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3620470..3620691 11..232 98 <- Plus
3L 3620742..3620812 233..303 100 <- Plus
3L 3620872..3620965 304..397 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:17:39 Download gff for BS17238.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3620470..3620691 11..232 98 <- Plus
arm_3L 3620742..3620812 233..303 100 <- Plus
arm_3L 3620872..3620965 304..397 100   Plus

BS17238.5prime Sequence

411 bp (411 high quality bases) assembled on 2007-05-15

> BS17238.5prime
GAAGTTATCAGTCGACATGAATCCAAATTCACGGTGCCTCGCGCTGCTAT
TCGTTGCGTTATCCTTTCTAGCTCAGGGCTTTTTCGACAGTTACAGAAGT
CCAAAGGAGTCAGCCGGTCTGGCCACTCTCTGTCAAGAAATTCAAAAGAT
CCAAGATGACTTTGTGCATCTGGCAGATAATTGCTCCATAGAGAAACTGA
CGGTGAACGACTCCCTGGAGTATCTGCAGATCAGTTGCCATGTGGATGAT
CTTCCAGAGGGCTACGAGCGGAGACTGAAACCCGTCGACTATGGCCGGAG
TTTCTTCCTCAACCAACGGATGCCGAAGCCTTTGAAGCGCCAGTGGAATT
TCCGAGTGCCCACAGACGCCGTGAATGGACTCAGTCTGCTGACTTGAAAG
CTTTCTAGACC

BS17238.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:11:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG14974-PA 381 CG14974-RA 1..381 17..397 1905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:29:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG14974-RA 491 CG14974-RA 68..448 17..397 1905 100 Plus
CG14974-RC 488 CG14974-RC 68..445 17..397 1850 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3620476..3620691 397..182 1080 100 Minus
3L 28110227 3L 3620872..3620965 110..17 470 100 Minus
3L 28110227 3L 3620742..3620812 181..111 355 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:29:39 has no hits.

BS17238.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:11:39 Download gff for BS17238.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14974-PA 1..381 17..397 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:49:17 Download gff for BS17238.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14974-RA 68..454 17..403 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:10:19 Download gff for BS17238.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14974-RA 68..454 17..403 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:10:19 Download gff for BS17238.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3620470..3620691 182..403 98 <- Minus
3L 3620742..3620812 111..181 100 <- Minus
3L 3620872..3620965 17..110 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:49:17 Download gff for BS17238.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3620470..3620691 182..403 98 <- Minus
arm_3L 3620742..3620812 111..181 100 <- Minus
arm_3L 3620872..3620965 17..110 100   Minus

BS17238.pep Sequence

Translation from 16 to 396

> BS17238.pep
MNPNSRCLALLFVALSFLAQGFFDSYRSPKESAGLATLCQEIQKIQDDFV
HLADNCSIEKLTVNDSLEYLQISCHVDDLPEGYERRLKPVDYGRSFFLNQ
RMPKPLKRQWNFRVPTDAVNGLSLLT*

BS17238.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:59:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG14974-PA 126 CG14974-PA 1..126 1..126 663 100 Plus
CG14974-PC 125 CG14974-PC 1..125 1..126 647 99.2 Plus