Clone Sequence Records
BS17239.complete Sequence
515 bp assembled on 2010-02-09
GenBank Submission: KX801916
> BS17239.complete
GAAGTTATCAGTCGACATGAGACAGCAGCTGCTGGACGAGGAGTTCGAGA
ATCTGCGTCGCGTAGCGCTGGCCATATGCGAGAATCTCGGGAGACCAAAA
GATCGGGAGATATGTCGAAGCACTCTAGAAGATCTGGCCAAGTTCCGCCA
GGGATCGTCGATTAGGATTAAGGAGAATGTGCATAAGTTCCTGATGTTCT
ATCTAAAAGTTCTGAGATGGTCGTACAAGAATCAGCCAACGGATCTATAT
CGCAAATGGTATGGACAAAACTTTGGCAAGGACCCAAAGTCTGCCCCATC
GGCCGGCAATTCCGAGGATGAACAGCGTGTTTGGTTGGAGGAGGGCAAGT
CCTTTTACGCCATGAAAACATTTGAAGATGGCTCCACAGTTGTTTACTCA
GCGGTGGTTAAGGATGCGAGAGCTGGTTGGTCGGAAAATGGTCTGAAAAC
TCTGATGGAAACGCAAGTGGGCTGCGCTTTGAATCGAAATGAAAATTGAA
AGCTTTCTAGACCAT
BS17239.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:03:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17217-RA | 483 | CG17217-PA | 1..483 | 17..499 | 2415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17217-RA | 626 | CG17217-RA | 108..591 | 17..500 | 2420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12170657..12170899 | 17..259 | 1215 | 100 | Plus |
2L | 23513712 | 2L | 12170956..12171197 | 259..500 | 1210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:03:10 has no hits.
BS17239.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:15 Download gff for
BS17239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17217-RA | 1..483 | 17..499 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:28 Download gff for
BS17239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17217-RA | 1..482 | 17..498 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:54 Download gff for
BS17239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17217-RA | 108..589 | 17..498 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:15 Download gff for
BS17239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17217-RA | 1..483 | 17..499 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:41:34 Download gff for
BS17239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17217-RA | 108..589 | 17..498 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:34 Download gff for
BS17239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12170657..12170899 | 17..259 | 100 | -> | Plus |
2L | 12170957..12171195 | 260..498 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:54 Download gff for
BS17239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12170657..12170899 | 17..259 | 100 | -> | Plus |
arm_2L | 12170957..12171195 | 260..498 | 100 | | Plus |
BS17239.3prime Sequence
513 bp (513 high quality bases) assembled on 2007-05-15
> BS17239.3prime
ATGGTCTAGAAAGCTTTCAATTTTCATTTCGATTCAAAGCGCAGCCCACT
TGCGTTTCCATCAGAGTTTTCAGACCATTTTCCGACCAACCAGCTCTCGC
ATCCTTAACCACCGCTGAGTAAACAACTGTGGAGCCATCTTCAAATGTTT
TCATGGCGTAAAAGGACTTGCCCTCCTCCAACCAAACACGCTGTTCATCC
TCGGAATTGCCGGCCGATGGGGCAGACTTTGGGTCCTTGCCAAAGTTTTG
TCCATACCATTTGCGATATAGATCCGTTGGCTGATTCTTGTACGACCATC
TCAGAACTTTTAGATAGAACATCAGGAACTTATGCACATTCTCCTTAATC
CTAATCGACGATCCCTGGCGGAACTTGGCCAGATCTTCTAGAGTGCTTCG
ACATATCTCCCGATCTTTTGGTCTCCCGAGATTCTCGCATATGGCCAGCG
CTACGCGACGCAGATTCTCGAACTCCTCGTCCAGCAGCTGCTGTCTCATG
TCGACTGATAACT
BS17239.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:18:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17217-PA | 483 | CG17217-RA | 1..483 | 499..17 | 2415 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:44:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17217-RA | 626 | CG17217-RA | 108..591 | 499..16 | 2420 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:44:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12170657..12170899 | 499..257 | 1215 | 100 | Minus |
2L | 23513712 | 2L | 12170956..12171197 | 257..16 | 1210 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:44:27 has no hits.
BS17239.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:18:24 Download gff for
BS17239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17217-PA | 1..483 | 17..499 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:48:32 Download gff for
BS17239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17217-RA | 108..597 | 10..499 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:18:26 Download gff for
BS17239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17217-RA | 108..597 | 10..499 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:18:26 Download gff for
BS17239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12170657..12170899 | 257..499 | 100 | -> | Minus |
2L | 12170957..12171203 | 10..256 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:48:32 Download gff for
BS17239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12170657..12170899 | 257..499 | 100 | -> | Minus |
arm_2L | 12170957..12171203 | 10..256 | 98 | | Minus |
BS17239.5prime Sequence
513 bp (513 high quality bases) assembled on 2007-05-15
> BS17239.5prime
GAAGTTATCAGTCGACATGAGACAGCAGCTGCTGGACGAGGAGTTCGAGA
ATCTGCGTCGCGTAGCGCTGGCCATATGCGAGAATCTCGGGAGACCAAAA
GATCGGGAGATATGTCGAAGCACTCTAGAAGATCTGGCCAAGTTCCGCCA
GGGATCGTCGATTAGGATTAAGGAGAATGTGCATAAGTTCCTGATGTTCT
ATCTAAAAGTTCTGAGATGGTCGTACAAGAATCAGCCAACGGATCTATAT
CGCAAATGGTATGGACAAAACTTTGGCAAGGACCCAAAGTCTGCCCCATC
GGCCGGCAATTCCGAGGATGAACAGCGTGTTTGGTTGGAGGAGGGCAAGT
CCTTTTACGCCATGAAAACATTTGAAGATGGCTCCACAGTTGTTTACTCA
GCGGTGGTTAAGGATGCGAGAGCTGGTTGGTCGGAAAATGGTCTGAAAAC
TCTGATGGAAACGCAAGTGGGCTGCGCTTTGAATCGAAATGAAAATTGAA
AGCTTTCTAGACC
BS17239.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:11:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17217-PA | 483 | CG17217-RA | 1..483 | 17..499 | 2415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:12:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17217-RA | 626 | CG17217-RA | 108..591 | 17..500 | 2420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:11:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12170657..12170899 | 17..259 | 1215 | 100 | Plus |
2L | 23513712 | 2L | 12170956..12171197 | 259..500 | 1210 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:11:58 has no hits.
BS17239.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:11:49 Download gff for
BS17239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17217-PA | 1..483 | 17..499 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:41:00 Download gff for
BS17239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17217-RA | 108..597 | 17..506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:30:25 Download gff for
BS17239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17217-RA | 108..597 | 17..506 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:30:25 Download gff for
BS17239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12170657..12170899 | 17..259 | 100 | -> | Plus |
2L | 12170957..12171203 | 260..506 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:41:00 Download gff for
BS17239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12170657..12170899 | 17..259 | 100 | -> | Plus |
arm_2L | 12170957..12171203 | 260..506 | 98 | | Plus |
BS17239.pep Sequence
Translation from 16 to 498
> BS17239.pep
MRQQLLDEEFENLRRVALAICENLGRPKDREICRSTLEDLAKFRQGSSIR
IKENVHKFLMFYLKVLRWSYKNQPTDLYRKWYGQNFGKDPKSAPSAGNSE
DEQRVWLEEGKSFYAMKTFEDGSTVVYSAVVKDARAGWSENGLKTLMETQ
VGCALNRNEN*
BS17239.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:01:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17217-PA | 160 | CG17217-PA | 1..160 | 1..160 | 845 | 100 | Plus |