Clone BS17239 Report

Search the DGRC for BS17239

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:172
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptCG17217-RA
Protein status:BS17239.pep: full length peptide match
Sequenced Size:515

Clone Sequence Records

BS17239.complete Sequence

515 bp assembled on 2010-02-09

GenBank Submission: KX801916

> BS17239.complete
GAAGTTATCAGTCGACATGAGACAGCAGCTGCTGGACGAGGAGTTCGAGA
ATCTGCGTCGCGTAGCGCTGGCCATATGCGAGAATCTCGGGAGACCAAAA
GATCGGGAGATATGTCGAAGCACTCTAGAAGATCTGGCCAAGTTCCGCCA
GGGATCGTCGATTAGGATTAAGGAGAATGTGCATAAGTTCCTGATGTTCT
ATCTAAAAGTTCTGAGATGGTCGTACAAGAATCAGCCAACGGATCTATAT
CGCAAATGGTATGGACAAAACTTTGGCAAGGACCCAAAGTCTGCCCCATC
GGCCGGCAATTCCGAGGATGAACAGCGTGTTTGGTTGGAGGAGGGCAAGT
CCTTTTACGCCATGAAAACATTTGAAGATGGCTCCACAGTTGTTTACTCA
GCGGTGGTTAAGGATGCGAGAGCTGGTTGGTCGGAAAATGGTCTGAAAAC
TCTGATGGAAACGCAAGTGGGCTGCGCTTTGAATCGAAATGAAAATTGAA
AGCTTTCTAGACCAT

BS17239.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:03:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG17217-RA 483 CG17217-PA 1..483 17..499 2415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG17217-RA 626 CG17217-RA 108..591 17..500 2420 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12170657..12170899 17..259 1215 100 Plus
2L 23513712 2L 12170956..12171197 259..500 1210 100 Plus
Blast to na_te.dros performed on 2014-11-28 03:03:10 has no hits.

BS17239.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:15 Download gff for BS17239.complete
Subject Subject Range Query Range Percent Splice Strand
CG17217-RA 1..483 17..499 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:28 Download gff for BS17239.complete
Subject Subject Range Query Range Percent Splice Strand
CG17217-RA 1..482 17..498 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:54 Download gff for BS17239.complete
Subject Subject Range Query Range Percent Splice Strand
CG17217-RA 108..589 17..498 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:15 Download gff for BS17239.complete
Subject Subject Range Query Range Percent Splice Strand
CG17217-RA 1..483 17..499 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:41:34 Download gff for BS17239.complete
Subject Subject Range Query Range Percent Splice Strand
CG17217-RA 108..589 17..498 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:34 Download gff for BS17239.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12170657..12170899 17..259 100 -> Plus
2L 12170957..12171195 260..498 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:54 Download gff for BS17239.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12170657..12170899 17..259 100 -> Plus
arm_2L 12170957..12171195 260..498 100   Plus

BS17239.3prime Sequence

513 bp (513 high quality bases) assembled on 2007-05-15

> BS17239.3prime
ATGGTCTAGAAAGCTTTCAATTTTCATTTCGATTCAAAGCGCAGCCCACT
TGCGTTTCCATCAGAGTTTTCAGACCATTTTCCGACCAACCAGCTCTCGC
ATCCTTAACCACCGCTGAGTAAACAACTGTGGAGCCATCTTCAAATGTTT
TCATGGCGTAAAAGGACTTGCCCTCCTCCAACCAAACACGCTGTTCATCC
TCGGAATTGCCGGCCGATGGGGCAGACTTTGGGTCCTTGCCAAAGTTTTG
TCCATACCATTTGCGATATAGATCCGTTGGCTGATTCTTGTACGACCATC
TCAGAACTTTTAGATAGAACATCAGGAACTTATGCACATTCTCCTTAATC
CTAATCGACGATCCCTGGCGGAACTTGGCCAGATCTTCTAGAGTGCTTCG
ACATATCTCCCGATCTTTTGGTCTCCCGAGATTCTCGCATATGGCCAGCG
CTACGCGACGCAGATTCTCGAACTCCTCGTCCAGCAGCTGCTGTCTCATG
TCGACTGATAACT

BS17239.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:18:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG17217-PA 483 CG17217-RA 1..483 499..17 2415 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:44:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG17217-RA 626 CG17217-RA 108..591 499..16 2420 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:44:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12170657..12170899 499..257 1215 100 Minus
2L 23513712 2L 12170956..12171197 257..16 1210 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:44:27 has no hits.

BS17239.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:18:24 Download gff for BS17239.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17217-PA 1..483 17..499 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:48:32 Download gff for BS17239.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17217-RA 108..597 10..499 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:18:26 Download gff for BS17239.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17217-RA 108..597 10..499 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:18:26 Download gff for BS17239.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 12170657..12170899 257..499 100 -> Minus
2L 12170957..12171203 10..256 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:48:32 Download gff for BS17239.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12170657..12170899 257..499 100 -> Minus
arm_2L 12170957..12171203 10..256 98   Minus

BS17239.5prime Sequence

513 bp (513 high quality bases) assembled on 2007-05-15

> BS17239.5prime
GAAGTTATCAGTCGACATGAGACAGCAGCTGCTGGACGAGGAGTTCGAGA
ATCTGCGTCGCGTAGCGCTGGCCATATGCGAGAATCTCGGGAGACCAAAA
GATCGGGAGATATGTCGAAGCACTCTAGAAGATCTGGCCAAGTTCCGCCA
GGGATCGTCGATTAGGATTAAGGAGAATGTGCATAAGTTCCTGATGTTCT
ATCTAAAAGTTCTGAGATGGTCGTACAAGAATCAGCCAACGGATCTATAT
CGCAAATGGTATGGACAAAACTTTGGCAAGGACCCAAAGTCTGCCCCATC
GGCCGGCAATTCCGAGGATGAACAGCGTGTTTGGTTGGAGGAGGGCAAGT
CCTTTTACGCCATGAAAACATTTGAAGATGGCTCCACAGTTGTTTACTCA
GCGGTGGTTAAGGATGCGAGAGCTGGTTGGTCGGAAAATGGTCTGAAAAC
TCTGATGGAAACGCAAGTGGGCTGCGCTTTGAATCGAAATGAAAATTGAA
AGCTTTCTAGACC

BS17239.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:11:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG17217-PA 483 CG17217-RA 1..483 17..499 2415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:12:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG17217-RA 626 CG17217-RA 108..591 17..500 2420 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:11:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12170657..12170899 17..259 1215 100 Plus
2L 23513712 2L 12170956..12171197 259..500 1210 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:11:58 has no hits.

BS17239.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:11:49 Download gff for BS17239.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17217-PA 1..483 17..499 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:41:00 Download gff for BS17239.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17217-RA 108..597 17..506 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:30:25 Download gff for BS17239.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17217-RA 108..597 17..506 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:30:25 Download gff for BS17239.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 12170657..12170899 17..259 100 -> Plus
2L 12170957..12171203 260..506 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:41:00 Download gff for BS17239.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12170657..12170899 17..259 100 -> Plus
arm_2L 12170957..12171203 260..506 98   Plus

BS17239.pep Sequence

Translation from 16 to 498

> BS17239.pep
MRQQLLDEEFENLRRVALAICENLGRPKDREICRSTLEDLAKFRQGSSIR
IKENVHKFLMFYLKVLRWSYKNQPTDLYRKWYGQNFGKDPKSAPSAGNSE
DEQRVWLEEGKSFYAMKTFEDGSTVVYSAVVKDARAGWSENGLKTLMETQ
VGCALNRNEN*

BS17239.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:01:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG17217-PA 160 CG17217-PA 1..160 1..160 845 100 Plus