Clone BS17240 Report

Search the DGRC for BS17240

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:172
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG31807-RA
Protein status:BS17240.pep: full length peptide match
Sequenced Size:500

Clone Sequence Records

BS17240.complete Sequence

500 bp assembled on 2010-02-09

GenBank Submission: KX801083

> BS17240.complete
GAAGTTATCAGTCGACATGCCCAATAACAAAGCCCAGACTCGCTCGTTGA
TGAGGATGCTGAAGAAGGATGTTGTTGAGCAGCTCTTAGCGGAAAGGAAA
AAAAGTGAGCAAAAGGACAAGCAACTGGCGAAGCTAAATATTACAACTCA
AGAGAAGGATAAAATGCGCGAGGAGGAACTCAAGCTATATTACCAAATGG
AAGAAGAGATAACCAATCAGAAATTATTGCAAGAGCAGTTGTTGTTCGAG
TCCAAGGACGAATTAACACAGCAGCTTGAGAAGATTGCCATCGAAAATAC
TTGCTGCATATGCCTGGATCCTTGGGAAGCGAAGGATCATCACCGCTTGG
TTTCGCTTAGATGTGGTCACCTTTTTGGGGAGATGTGCATCCGGACCCAC
TTGCAGCATGCCGATATGTGCCCAATATGCCGCAAAGTAGCTATTGAAAG
AGACGTCTGGCGTGTGTTATTAAACACGCCATAAAAGCTTTCTAGACCAT

BS17240.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:02:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG31807-RA 468 CG31807-PA 1..468 17..484 2340 100 Plus
CG31807-RB 429 CG31807-PB 1..429 56..484 2145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG31807-RA 584 CG31807-RA 37..506 17..486 2350 100 Plus
CG31807-RB 931 CG31807-RB 400..853 33..486 2270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16681897..16682366 486..17 2350 100 Minus
Blast to na_te.dros performed on 2014-11-28 03:02:18 has no hits.

BS17240.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:45 Download gff for BS17240.complete
Subject Subject Range Query Range Percent Splice Strand
CG31807-RA 1..468 17..484 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:22 Download gff for BS17240.complete
Subject Subject Range Query Range Percent Splice Strand
CG31807-RA 37..502 17..482 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:35 Download gff for BS17240.complete
Subject Subject Range Query Range Percent Splice Strand
CG31807-RA 37..502 17..482 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:45 Download gff for BS17240.complete
Subject Subject Range Query Range Percent Splice Strand
CG31807-RA 37..516 17..494 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:41:18 Download gff for BS17240.complete
Subject Subject Range Query Range Percent Splice Strand
CG31807-RA 37..502 17..482 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:18 Download gff for BS17240.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16681901..16682366 17..482 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:35 Download gff for BS17240.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16681901..16682366 17..482 100   Minus

BS17240.3prime Sequence

498 bp (498 high quality bases) assembled on 2007-05-15

> BS17240.3prime
ATGGTCTAGAAAGCTTTTATGGCGTGTTTAATAACACACGCCAGACGTCT
CTTTCAATAGCTACTTTGCGGCATATTGGGCACATATCGGCATGCTGCAA
GTGGGTCCGGATGCACATCTCCCCAAAAAGGTGACCACATCTAAGCGAAA
CCAAGCGGTGATGATCCTTCGCTTCCCAAGGATCCAGGCATATGCAGCAA
GTATTTTCGATGGCAATCTTCTCAAGCTGCTGTGTTAATTCGTCCTTGGA
CTCGAACAACAACTGCTCTTGCAATAATTTCTGATTGGTTATCTCTTCTT
CCATTTGGTAATATAGCTTGAGTTCCTCCTCGCGCATTTTATCCTTCTCT
TGAGTTGTAATATTTAGCTTCGCCAGTTGCTTGTCCTTTTGCTCACTTTT
TTTCCTTTCCGCTAAGAGCTGCTCAACAACATCCTTCTTCAGCATCCTCA
TCAACGAGCGAGTCTGGGCTTTGTTATTGGGCATGTCGACTGATAACT

BS17240.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:21:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG31807-PA 468 CG31807-RA 1..468 484..17 2340 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:04:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG31807-RA 584 CG31807-RA 37..506 484..15 2350 100 Minus
CG31807-RB 931 CG31807-RB 400..853 468..15 2270 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:04:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16681897..16682366 15..484 2350 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:04:58 has no hits.

BS17240.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:21:38 Download gff for BS17240.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31807-PA 1..468 17..484 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:48:40 Download gff for BS17240.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31807-RA 37..516 7..484 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:02:16 Download gff for BS17240.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31807-RA 37..516 7..484 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:02:16 Download gff for BS17240.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16681887..16682366 7..484 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:48:40 Download gff for BS17240.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16681887..16682366 7..484 99   Plus

BS17240.5prime Sequence

498 bp (498 high quality bases) assembled on 2007-05-15

> BS17240.5prime
GAAGTTATCAGTCGACATGCCCAATAACAAAGCCCAGACTCGCTCGTTGA
TGAGGATGCTGAAGAAGGATGTTGTTGAGCAGCTCTTAGCGGAAAGGAAA
AAAAGTGAGCAAAAGGACAAGCAACTGGCGAAGCTAAATATTACAACTCA
AGAGAAGGATAAAATGCGCGAGGAGGAACTCAAGCTATATTACCAAATGG
AAGAAGAGATAACCAATCAGAAATTATTGCAAGAGCAGTTGTTGTTCGAG
TCCAAGGACGAATTAACACAGCAGCTTGAGAAGATTGCCATCGAAAATAC
TTGCTGCATATGCCTGGATCCTTGGGAAGCGAAGGATCATCACCGCTTGG
TTTCGCTTAGATGTGGTCACCTTTTTGGGGAGATGTGCATCCGGACCCAC
TTGCAGCATGCCGATATGTGCCCAATATGCCGCAAAGTAGCTATTGAAAG
AGACGTCTGGCGTGTGTTATTAAACACGCCATAAAAGCTTTCTAGACC

BS17240.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:14:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG31807-PA 468 CG31807-RA 1..468 17..484 2340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:58:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG31807-RA 584 CG31807-RA 37..506 17..486 2350 100 Plus
CG31807-RB 931 CG31807-RB 400..853 33..486 2270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:58:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16681897..16682366 486..17 2350 100 Minus
Blast to na_te.dros performed on 2015-02-13 05:58:30 has no hits.

BS17240.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:14:53 Download gff for BS17240.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31807-PA 1..468 17..484 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:47:19 Download gff for BS17240.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31807-RA 37..516 17..494 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:04:29 Download gff for BS17240.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31807-RA 37..516 17..494 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:04:29 Download gff for BS17240.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16681887..16682366 17..494 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:47:19 Download gff for BS17240.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16681887..16682366 17..494 99   Minus

BS17240.pep Sequence

Translation from 16 to 483

> BS17240.pep
MPNNKAQTRSLMRMLKKDVVEQLLAERKKSEQKDKQLAKLNITTQEKDKM
REEELKLYYQMEEEITNQKLLQEQLLFESKDELTQQLEKIAIENTCCICL
DPWEAKDHHRLVSLRCGHLFGEMCIRTHLQHADMCPICRKVAIERDVWRV
LLNTP*

BS17240.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:01:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG31807-PA 155 CG31807-PA 1..155 1..155 814 100 Plus
CG31807-PB 142 CG31807-PB 1..142 14..155 748 100 Plus
CG13481-PC 176 CG13481-PC 33..169 21..150 231 37.2 Plus
CG13481-PB 176 CG13481-PB 33..169 21..150 231 37.2 Plus
CG33552-PA 157 CG33552-PA 4..136 9..143 202 32.6 Plus