Clone Sequence Records
BS17240.complete Sequence
500 bp assembled on 2010-02-09
GenBank Submission: KX801083
> BS17240.complete
GAAGTTATCAGTCGACATGCCCAATAACAAAGCCCAGACTCGCTCGTTGA
TGAGGATGCTGAAGAAGGATGTTGTTGAGCAGCTCTTAGCGGAAAGGAAA
AAAAGTGAGCAAAAGGACAAGCAACTGGCGAAGCTAAATATTACAACTCA
AGAGAAGGATAAAATGCGCGAGGAGGAACTCAAGCTATATTACCAAATGG
AAGAAGAGATAACCAATCAGAAATTATTGCAAGAGCAGTTGTTGTTCGAG
TCCAAGGACGAATTAACACAGCAGCTTGAGAAGATTGCCATCGAAAATAC
TTGCTGCATATGCCTGGATCCTTGGGAAGCGAAGGATCATCACCGCTTGG
TTTCGCTTAGATGTGGTCACCTTTTTGGGGAGATGTGCATCCGGACCCAC
TTGCAGCATGCCGATATGTGCCCAATATGCCGCAAAGTAGCTATTGAAAG
AGACGTCTGGCGTGTGTTATTAAACACGCCATAAAAGCTTTCTAGACCAT
BS17240.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:02:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31807-RA | 468 | CG31807-PA | 1..468 | 17..484 | 2340 | 100 | Plus |
CG31807-RB | 429 | CG31807-PB | 1..429 | 56..484 | 2145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31807-RA | 584 | CG31807-RA | 37..506 | 17..486 | 2350 | 100 | Plus |
CG31807-RB | 931 | CG31807-RB | 400..853 | 33..486 | 2270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16681897..16682366 | 486..17 | 2350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:02:18 has no hits.
BS17240.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:45 Download gff for
BS17240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31807-RA | 1..468 | 17..484 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:22 Download gff for
BS17240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31807-RA | 37..502 | 17..482 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:35 Download gff for
BS17240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31807-RA | 37..502 | 17..482 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:45 Download gff for
BS17240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31807-RA | 37..516 | 17..494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:41:18 Download gff for
BS17240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31807-RA | 37..502 | 17..482 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:18 Download gff for
BS17240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16681901..16682366 | 17..482 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:35 Download gff for
BS17240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16681901..16682366 | 17..482 | 100 | | Minus |
BS17240.3prime Sequence
498 bp (498 high quality bases) assembled on 2007-05-15
> BS17240.3prime
ATGGTCTAGAAAGCTTTTATGGCGTGTTTAATAACACACGCCAGACGTCT
CTTTCAATAGCTACTTTGCGGCATATTGGGCACATATCGGCATGCTGCAA
GTGGGTCCGGATGCACATCTCCCCAAAAAGGTGACCACATCTAAGCGAAA
CCAAGCGGTGATGATCCTTCGCTTCCCAAGGATCCAGGCATATGCAGCAA
GTATTTTCGATGGCAATCTTCTCAAGCTGCTGTGTTAATTCGTCCTTGGA
CTCGAACAACAACTGCTCTTGCAATAATTTCTGATTGGTTATCTCTTCTT
CCATTTGGTAATATAGCTTGAGTTCCTCCTCGCGCATTTTATCCTTCTCT
TGAGTTGTAATATTTAGCTTCGCCAGTTGCTTGTCCTTTTGCTCACTTTT
TTTCCTTTCCGCTAAGAGCTGCTCAACAACATCCTTCTTCAGCATCCTCA
TCAACGAGCGAGTCTGGGCTTTGTTATTGGGCATGTCGACTGATAACT
BS17240.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:21:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31807-PA | 468 | CG31807-RA | 1..468 | 484..17 | 2340 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:04:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31807-RA | 584 | CG31807-RA | 37..506 | 484..15 | 2350 | 100 | Minus |
CG31807-RB | 931 | CG31807-RB | 400..853 | 468..15 | 2270 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:04:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16681897..16682366 | 15..484 | 2350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:04:58 has no hits.
BS17240.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:21:38 Download gff for
BS17240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31807-PA | 1..468 | 17..484 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:48:40 Download gff for
BS17240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31807-RA | 37..516 | 7..484 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:02:16 Download gff for
BS17240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31807-RA | 37..516 | 7..484 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:02:16 Download gff for
BS17240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16681887..16682366 | 7..484 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:48:40 Download gff for
BS17240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16681887..16682366 | 7..484 | 99 | | Plus |
BS17240.5prime Sequence
498 bp (498 high quality bases) assembled on 2007-05-15
> BS17240.5prime
GAAGTTATCAGTCGACATGCCCAATAACAAAGCCCAGACTCGCTCGTTGA
TGAGGATGCTGAAGAAGGATGTTGTTGAGCAGCTCTTAGCGGAAAGGAAA
AAAAGTGAGCAAAAGGACAAGCAACTGGCGAAGCTAAATATTACAACTCA
AGAGAAGGATAAAATGCGCGAGGAGGAACTCAAGCTATATTACCAAATGG
AAGAAGAGATAACCAATCAGAAATTATTGCAAGAGCAGTTGTTGTTCGAG
TCCAAGGACGAATTAACACAGCAGCTTGAGAAGATTGCCATCGAAAATAC
TTGCTGCATATGCCTGGATCCTTGGGAAGCGAAGGATCATCACCGCTTGG
TTTCGCTTAGATGTGGTCACCTTTTTGGGGAGATGTGCATCCGGACCCAC
TTGCAGCATGCCGATATGTGCCCAATATGCCGCAAAGTAGCTATTGAAAG
AGACGTCTGGCGTGTGTTATTAAACACGCCATAAAAGCTTTCTAGACC
BS17240.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:14:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31807-PA | 468 | CG31807-RA | 1..468 | 17..484 | 2340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:58:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31807-RA | 584 | CG31807-RA | 37..506 | 17..486 | 2350 | 100 | Plus |
CG31807-RB | 931 | CG31807-RB | 400..853 | 33..486 | 2270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:58:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16681897..16682366 | 486..17 | 2350 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:58:30 has no hits.
BS17240.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:14:53 Download gff for
BS17240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31807-PA | 1..468 | 17..484 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:47:19 Download gff for
BS17240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31807-RA | 37..516 | 17..494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:04:29 Download gff for
BS17240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31807-RA | 37..516 | 17..494 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:04:29 Download gff for
BS17240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16681887..16682366 | 17..494 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:47:19 Download gff for
BS17240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16681887..16682366 | 17..494 | 99 | | Minus |
BS17240.pep Sequence
Translation from 16 to 483
> BS17240.pep
MPNNKAQTRSLMRMLKKDVVEQLLAERKKSEQKDKQLAKLNITTQEKDKM
REEELKLYYQMEEEITNQKLLQEQLLFESKDELTQQLEKIAIENTCCICL
DPWEAKDHHRLVSLRCGHLFGEMCIRTHLQHADMCPICRKVAIERDVWRV
LLNTP*
BS17240.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:01:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31807-PA | 155 | CG31807-PA | 1..155 | 1..155 | 814 | 100 | Plus |
CG31807-PB | 142 | CG31807-PB | 1..142 | 14..155 | 748 | 100 | Plus |
CG13481-PC | 176 | CG13481-PC | 33..169 | 21..150 | 231 | 37.2 | Plus |
CG13481-PB | 176 | CG13481-PB | 33..169 | 21..150 | 231 | 37.2 | Plus |
CG33552-PA | 157 | CG33552-PA | 4..136 | 9..143 | 202 | 32.6 | Plus |