Clone Sequence Records
BS17241.3prime Sequence
324 bp (324 high quality bases) assembled on 2007-05-15
> BS17241.3prime
ATGGTCTAGAAAGCTTCTATGCCCCAACTTTGCAGAACTTTTTCGATGTT
TTTCGCAGCCTTAACCACCACTCGAAGTCATTCTTGATGTATTTAGCTTT
GACAGCACGTTCGCGTTGCTGCACAAATTCGTCGCGATCGCGCAGCCAAA
TTCTAGCGTACTCCCAGCCAATCAAGTGCGACATCGATACCGGACTGCAC
TCTAGCTCGCAGGACGGCACAAAGCGTTCTCGTTTTCCCGCTTCGGTGGT
AAGATTATCCTTAGGCTTACATAGGCGAGCTCGCGACCATTCTTTGGTCT
GCTTATTCATGTCGACTGATAACT
BS17241.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:21:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31816-PA | 294 | CG31816-RA | 1..294 | 310..17 | 1470 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:05:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31816-RA | 509 | CG31816-RA | 128..425 | 310..13 | 1490 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:05:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16542991..16543179 | 201..13 | 945 | 100 | Minus |
2L | 23513712 | 2L | 16542673..16542783 | 310..200 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:05:01 has no hits.
BS17241.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:21:47 Download gff for
BS17241.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31816-PA | 1..294 | 17..310 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:48:41 Download gff for
BS17241.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31816-RA | 121..425 | 13..319 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:02:26 Download gff for
BS17241.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31816-RA | 121..425 | 13..319 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:02:26 Download gff for
BS17241.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16542666..16542783 | 200..319 | 97 | -> | Minus |
2L | 16542993..16543179 | 13..199 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:48:41 Download gff for
BS17241.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16542666..16542783 | 200..319 | 97 | -> | Minus |
arm_2L | 16542993..16543179 | 13..199 | 100 | | Minus |
BS17241.5prime Sequence
324 bp (324 high quality bases) assembled on 2007-05-15
> BS17241.5prime
GAAGTTATCAGTCGACATGAATAAGCAGACCAAAGAATGGTCGCGAGCTC
GCCTATGTAAGCCTAAGGATAATCTTACCACCGAAGCGGGAAAACGAGAA
CGCTTTGTGCCGTCCTGCGAGCTAGAGTGCAGTCCGGTATCGATGTCGCA
CTTGATTGGCTGGGAGTACGCTAGAATTTGGCTGCGCGATCGCGACGAAT
TTGTGCAGCAACGCGAACGTGCTGTCAAAGCTAAATACATCAAGAATGAC
TTCGAGTGGTGGTTAAGGCTGCGAAAAACATCGAAAAAGTTCTGCAAAGT
TGGGGCATAGAAGCTTTCTAGACC
BS17241.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:14:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31816-PA | 294 | CG31816-RA | 1..294 | 17..310 | 1470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:34:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31816-RA | 509 | CG31816-RA | 128..425 | 17..314 | 1490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:34:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16542991..16543179 | 126..314 | 945 | 100 | Plus |
2L | 23513712 | 2L | 16542673..16542783 | 17..127 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:34:49 has no hits.
BS17241.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:15:01 Download gff for
BS17241.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31816-PA | 1..294 | 17..310 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:16:02 Download gff for
BS17241.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31816-RA | 121..425 | 8..314 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:50:36 Download gff for
BS17241.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31816-RA | 121..425 | 8..314 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:50:36 Download gff for
BS17241.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16542666..16542783 | 8..127 | 97 | -> | Plus |
2L | 16542993..16543179 | 128..314 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:16:02 Download gff for
BS17241.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16542666..16542783 | 8..127 | 97 | -> | Plus |
arm_2L | 16542993..16543179 | 128..314 | 100 | | Plus |
BS17241.complete Sequence
326 bp assembled on 2010-02-09
GenBank Submission: KX803564
> BS17241.complete
GAAGTTATCAGTCGACATGAATAAGCAGACCAAAGAATGGTCGCGAGCTC
GCCTATGTAAGCCTAAGGATAATCTTACCACCGAAGCGGGAAAACGAGAA
CGCTTTGTGCCGTCCTGCGAGCTAGAGTGCAGTCCGGTATCGATGTCGCA
CTTGATTGGCTGGGAGTACGCTAGAATTTGGCTGCGCGATCGCGACGAAT
TTGTGCAGCAACGCGAACGTGCTGTCAAAGCTAAATACATCAAGAATGAC
TTCGAGTGGTGGTTAAGGCTGCGAAAAACATCGAAAAAGTTCTGCAAAGT
TGGGGCATAGAAGCTTTCTAGACCAT
BS17241.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:41:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31816-RA | 294 | CG31816-PA | 1..294 | 17..310 | 1470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:42:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31816-RA | 509 | CG31816-RA | 128..425 | 17..314 | 1490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:41:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16542991..16543179 | 126..314 | 945 | 100 | Plus |
2L | 23513712 | 2L | 16542673..16542783 | 17..127 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:41:58 has no hits.
BS17241.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:12:06 Download gff for
BS17241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31816-RA | 1..294 | 17..310 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:13:06 Download gff for
BS17241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31816-RA | 128..421 | 17..310 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:25 Download gff for
BS17241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31816-RA | 128..421 | 17..310 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:07 Download gff for
BS17241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31816-RA | 111..415 | 8..314 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:34:59 Download gff for
BS17241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31816-RA | 128..421 | 17..310 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:34:59 Download gff for
BS17241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16542673..16542783 | 17..127 | 100 | -> | Plus |
2L | 16542993..16543175 | 128..310 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:25 Download gff for
BS17241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16542673..16542783 | 17..127 | 100 | -> | Plus |
arm_2L | 16542993..16543175 | 128..310 | 100 | | Plus |
BS17241.pep Sequence
Translation from 16 to 309
> BS17241.pep
MNKQTKEWSRARLCKPKDNLTTEAGKRERFVPSCELECSPVSMSHLIGWE
YARIWLRDRDEFVQQRERAVKAKYIKNDFEWWLRLRKTSKKFCKVGA*
BS17241.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:55:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31816-PA | 97 | CG31816-PA | 1..97 | 1..97 | 531 | 100 | Plus |