Clone BS17241 Report

Search the DGRC for BS17241

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:172
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCG31816-RA
Protein status:BS17241.pep: full length peptide match
Sequenced Size:326

Clone Sequence Records

BS17241.3prime Sequence

324 bp (324 high quality bases) assembled on 2007-05-15

> BS17241.3prime
ATGGTCTAGAAAGCTTCTATGCCCCAACTTTGCAGAACTTTTTCGATGTT
TTTCGCAGCCTTAACCACCACTCGAAGTCATTCTTGATGTATTTAGCTTT
GACAGCACGTTCGCGTTGCTGCACAAATTCGTCGCGATCGCGCAGCCAAA
TTCTAGCGTACTCCCAGCCAATCAAGTGCGACATCGATACCGGACTGCAC
TCTAGCTCGCAGGACGGCACAAAGCGTTCTCGTTTTCCCGCTTCGGTGGT
AAGATTATCCTTAGGCTTACATAGGCGAGCTCGCGACCATTCTTTGGTCT
GCTTATTCATGTCGACTGATAACT

BS17241.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:21:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG31816-PA 294 CG31816-RA 1..294 310..17 1470 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:05:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG31816-RA 509 CG31816-RA 128..425 310..13 1490 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:05:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16542991..16543179 201..13 945 100 Minus
2L 23513712 2L 16542673..16542783 310..200 555 100 Minus
Blast to na_te.dros performed on 2015-02-13 06:05:01 has no hits.

BS17241.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:21:47 Download gff for BS17241.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31816-PA 1..294 17..310 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:48:41 Download gff for BS17241.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31816-RA 121..425 13..319 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:02:26 Download gff for BS17241.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31816-RA 121..425 13..319 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:02:26 Download gff for BS17241.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16542666..16542783 200..319 97 -> Minus
2L 16542993..16543179 13..199 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:48:41 Download gff for BS17241.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16542666..16542783 200..319 97 -> Minus
arm_2L 16542993..16543179 13..199 100   Minus

BS17241.5prime Sequence

324 bp (324 high quality bases) assembled on 2007-05-15

> BS17241.5prime
GAAGTTATCAGTCGACATGAATAAGCAGACCAAAGAATGGTCGCGAGCTC
GCCTATGTAAGCCTAAGGATAATCTTACCACCGAAGCGGGAAAACGAGAA
CGCTTTGTGCCGTCCTGCGAGCTAGAGTGCAGTCCGGTATCGATGTCGCA
CTTGATTGGCTGGGAGTACGCTAGAATTTGGCTGCGCGATCGCGACGAAT
TTGTGCAGCAACGCGAACGTGCTGTCAAAGCTAAATACATCAAGAATGAC
TTCGAGTGGTGGTTAAGGCTGCGAAAAACATCGAAAAAGTTCTGCAAAGT
TGGGGCATAGAAGCTTTCTAGACC

BS17241.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:14:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG31816-PA 294 CG31816-RA 1..294 17..310 1470 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:34:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG31816-RA 509 CG31816-RA 128..425 17..314 1490 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:34:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16542991..16543179 126..314 945 100 Plus
2L 23513712 2L 16542673..16542783 17..127 555 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:34:49 has no hits.

BS17241.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:15:01 Download gff for BS17241.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31816-PA 1..294 17..310 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:16:02 Download gff for BS17241.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31816-RA 121..425 8..314 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:50:36 Download gff for BS17241.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31816-RA 121..425 8..314 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:50:36 Download gff for BS17241.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16542666..16542783 8..127 97 -> Plus
2L 16542993..16543179 128..314 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:16:02 Download gff for BS17241.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16542666..16542783 8..127 97 -> Plus
arm_2L 16542993..16543179 128..314 100   Plus

BS17241.complete Sequence

326 bp assembled on 2010-02-09

GenBank Submission: KX803564

> BS17241.complete
GAAGTTATCAGTCGACATGAATAAGCAGACCAAAGAATGGTCGCGAGCTC
GCCTATGTAAGCCTAAGGATAATCTTACCACCGAAGCGGGAAAACGAGAA
CGCTTTGTGCCGTCCTGCGAGCTAGAGTGCAGTCCGGTATCGATGTCGCA
CTTGATTGGCTGGGAGTACGCTAGAATTTGGCTGCGCGATCGCGACGAAT
TTGTGCAGCAACGCGAACGTGCTGTCAAAGCTAAATACATCAAGAATGAC
TTCGAGTGGTGGTTAAGGCTGCGAAAAACATCGAAAAAGTTCTGCAAAGT
TGGGGCATAGAAGCTTTCTAGACCAT

BS17241.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:41:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG31816-RA 294 CG31816-PA 1..294 17..310 1470 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:42:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG31816-RA 509 CG31816-RA 128..425 17..314 1490 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:41:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16542991..16543179 126..314 945 100 Plus
2L 23513712 2L 16542673..16542783 17..127 555 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:41:58 has no hits.

BS17241.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:12:06 Download gff for BS17241.complete
Subject Subject Range Query Range Percent Splice Strand
CG31816-RA 1..294 17..310 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:13:06 Download gff for BS17241.complete
Subject Subject Range Query Range Percent Splice Strand
CG31816-RA 128..421 17..310 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:25 Download gff for BS17241.complete
Subject Subject Range Query Range Percent Splice Strand
CG31816-RA 128..421 17..310 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:07 Download gff for BS17241.complete
Subject Subject Range Query Range Percent Splice Strand
CG31816-RA 111..415 8..314 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:34:59 Download gff for BS17241.complete
Subject Subject Range Query Range Percent Splice Strand
CG31816-RA 128..421 17..310 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:34:59 Download gff for BS17241.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16542673..16542783 17..127 100 -> Plus
2L 16542993..16543175 128..310 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:25 Download gff for BS17241.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16542673..16542783 17..127 100 -> Plus
arm_2L 16542993..16543175 128..310 100   Plus

BS17241.pep Sequence

Translation from 16 to 309

> BS17241.pep
MNKQTKEWSRARLCKPKDNLTTEAGKRERFVPSCELECSPVSMSHLIGWE
YARIWLRDRDEFVQQRERAVKAKYIKNDFEWWLRLRKTSKKFCKVGA*

BS17241.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:55:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG31816-PA 97 CG31816-PA 1..97 1..97 531 100 Plus