Clone BS17243 Report

Search the DGRC for BS17243

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:172
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptLSm1-RA
Protein status:BS17243.pep: full length peptide match
Sequenced Size:446

Clone Sequence Records

BS17243.complete Sequence

446 bp assembled on 2010-02-09

GenBank Submission: KX801511

> BS17243.complete
GAAGTTATCAGTCGACATGGACGACTTAAATCCGCTGGCGGGCACTGCTC
ACCTCCTGGAAGAGGTTGACAAGAAACTGATGGTACTTTTGAGAGACGGA
CGGACTCTGATTGGATACCTGCGGTCCGTGGACCAGTTCGCCAACCTGGT
GCTGCAACGCACCATCGAGCGGATACATGTGGGCAACGAATACGGCGACA
TTCCTCGCGGAGTCTTCATCATTCGCGGGGAGAATGTGGTGCTACTGGGC
GAAATAGACCGTGAAAAGGAGCAGAAACTGCCACTCAAAGAGATATCCGT
CGATGAAATCCTGGACGCCCAGCGTAGGGAACAGGAGCAGCGGCAGGAGA
AACACCGCCTAGTATCCAAGGCACTAAAGGAACGAGGCCTGGCCGTAGAT
GCCAACATAATCAACGAGGACTTCTGCTAAAAGCTTTCTAGACCAT

BS17243.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:00:32
Subject Length Description Subject Range Query Range Score Percent Strand
LSm1-RA 414 CG4279-PA 1..414 17..430 2055 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:33
Subject Length Description Subject Range Query Range Score Percent Strand
LSm1-RA 588 CG4279-RA 78..492 16..430 2060 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21170300..21170485 257..72 930 100 Minus
2R 25286936 2R 21170065..21170238 430..257 870 100 Minus
2R 25286936 2R 21170540..21170595 71..16 265 98.2 Minus
Blast to na_te.dros performed on 2014-11-28 03:00:30 has no hits.

BS17243.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:22:57 Download gff for BS17243.complete
Subject Subject Range Query Range Percent Splice Strand
CG4279-RA 1..414 17..430 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:09 Download gff for BS17243.complete
Subject Subject Range Query Range Percent Splice Strand
CG4279-RA 52..463 17..428 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:45 Download gff for BS17243.complete
Subject Subject Range Query Range Percent Splice Strand
LSm1-RA 79..490 17..428 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:22:58 Download gff for BS17243.complete
Subject Subject Range Query Range Percent Splice Strand
CG4279-RA 42..469 5..435 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:35 Download gff for BS17243.complete
Subject Subject Range Query Range Percent Splice Strand
LSm1-RA 79..490 17..428 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:35 Download gff for BS17243.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21170067..21170238 257..428 100 <- Minus
2R 21170301..21170485 72..256 100 <- Minus
2R 21170540..21170594 17..71 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:45 Download gff for BS17243.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17058045..17058099 17..71 98   Minus
arm_2R 17057572..17057743 257..428 100 <- Minus
arm_2R 17057806..17057990 72..256 100 <- Minus

BS17243.3prime Sequence

444 bp (444 high quality bases) assembled on 2007-05-15

> BS17243.3prime
ATGGTCTAGAAAGCTTTTAGCAGAAGTCCTCGTTGATTATGTTGGCATCT
ACGGCCAGGCCTCGTTCCTTTAGTGCCTTGGATACTAGGCGGTGTTTCTC
CTGCCGCTGCTCCTGTTCCCTACGCTGGGCGTCCAGGATTTCATCGACGG
ATATCTCTTTGAGTGGCAGTTTCTGCTCCTTTTCACGGTCTATTTCGCCC
AGTAGCACCACATTCTCCCCGCGAATGATGAAGACTCCGCGAGGAATGTC
GCCGTATTCGTTGCCCACATGTATCCGCTCGATGGTGCGTTGCAGCACCA
GGTTGGCGAACTGGTCCACGGACCGCAGGTATCCAATCAGAGTCCGTCCG
TCTCTCAAAAGTACCATCAGTTTCTTGTCAACCTCTTCCAGGAGGTGAGC
AGTGCCCGCCAGCGGATTTAAGTCGTCCATGTCGACTGATAACT

BS17243.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:18:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG4279-PA 414 CG4279-RA 1..414 430..17 2045 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:35:36
Subject Length Description Subject Range Query Range Score Percent Strand
LSm1-RA 588 CG4279-RA 78..492 431..17 2060 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:35:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21170300..21170485 190..375 930 100 Plus
2R 25286936 2R 21170065..21170238 17..190 870 100 Plus
2R 25286936 2R 21170540..21170595 376..431 265 98.2 Plus
Blast to na_te.dros performed on 2015-02-12 10:35:35 has no hits.

BS17243.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:18:11 Download gff for BS17243.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4279-PA 1..414 17..430 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:50:18 Download gff for BS17243.3prime
Subject Subject Range Query Range Percent Splice Strand
LSm1-RA 68..496 12..444 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:08:52 Download gff for BS17243.3prime
Subject Subject Range Query Range Percent Splice Strand
LSm1-RA 68..496 12..444 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:08:52 Download gff for BS17243.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21170061..21170238 12..190 98 <- Plus
2R 21170301..21170485 191..375 100 <- Plus
2R 21170540..21170605 376..444 91   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:50:18 Download gff for BS17243.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17057566..17057743 12..190 98 <- Plus
arm_2R 17057806..17057990 191..375 100 <- Plus
arm_2R 17058045..17058110 376..444 91   Plus

BS17243.5prime Sequence

444 bp (444 high quality bases) assembled on 2007-05-15

> BS17243.5prime
GAAGTTATCAGTCGACATGGACGACTTAAATCCGCTGGCGGGCACTGCTC
ACCTCCTGGAAGAGGTTGACAAGAAACTGATGGTACTTTTGAGAGACGGA
CGGACTCTGATTGGATACCTGCGGTCCGTGGACCAGTTCGCCAACCTGGT
GCTGCAACGCACCATCGAGCGGATACATGTGGGCAACGAATACGGCGACA
TTCCTCGCGGAGTCTTCATCATTCGCGGGGAGAATGTGGTGCTACTGGGC
GAAATAGACCGTGAAAAGGAGCAGAAACTGCCACTCAAAGAGATATCCGT
CGATGAAATCCTGGACGCCCAGCGTAGGGAACAGGAGCAGCGGCAGGAGA
AACACCGCCTAGTATCCAAGGCACTAAAGGAACGAGGCCTGGCCGTAGAT
GCCAACATAATCAACGAGGACTTCTGCTAAAAGCTTTCTAGACC

BS17243.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:11:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG4279-PA 414 CG4279-RA 1..414 17..430 2045 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:51:25
Subject Length Description Subject Range Query Range Score Percent Strand
LSm1-RA 588 CG4279-RA 78..492 16..430 2060 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21170300..21170485 257..72 930 100 Minus
2R 25286936 2R 21170065..21170238 430..257 870 100 Minus
2R 25286936 2R 21170540..21170595 71..16 265 98.2 Minus
Blast to na_te.dros performed on 2015-02-10 20:51:23 has no hits.

BS17243.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:11:35 Download gff for BS17243.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4279-PA 1..414 17..430 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:10:21 Download gff for BS17243.5prime
Subject Subject Range Query Range Percent Splice Strand
LSm1-RA 69..496 5..435 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:17 Download gff for BS17243.5prime
Subject Subject Range Query Range Percent Splice Strand
LSm1-RA 69..496 5..435 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:17 Download gff for BS17243.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21170540..21170603 5..71 92   Minus
2R 21170061..21170238 257..435 98 <- Minus
2R 21170301..21170485 72..256 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:10:21 Download gff for BS17243.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17057566..17057743 257..435 98 <- Minus
arm_2R 17057806..17057990 72..256 100 <- Minus
arm_2R 17058045..17058108 5..71 92   Minus

BS17243.pep Sequence

Translation from 16 to 429

> BS17243.pep
MDDLNPLAGTAHLLEEVDKKLMVLLRDGRTLIGYLRSVDQFANLVLQRTI
ERIHVGNEYGDIPRGVFIIRGENVVLLGEIDREKEQKLPLKEISVDEILD
AQRREQEQRQEKHRLVSKALKERGLAVDANIINEDFC*

BS17243.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:02:26
Subject Length Description Subject Range Query Range Score Percent Strand
LSm1-PA 137 CG4279-PA 1..137 1..137 686 100 Plus