Clone Sequence Records
BS17243.complete Sequence
446 bp assembled on 2010-02-09
GenBank Submission: KX801511
> BS17243.complete
GAAGTTATCAGTCGACATGGACGACTTAAATCCGCTGGCGGGCACTGCTC
ACCTCCTGGAAGAGGTTGACAAGAAACTGATGGTACTTTTGAGAGACGGA
CGGACTCTGATTGGATACCTGCGGTCCGTGGACCAGTTCGCCAACCTGGT
GCTGCAACGCACCATCGAGCGGATACATGTGGGCAACGAATACGGCGACA
TTCCTCGCGGAGTCTTCATCATTCGCGGGGAGAATGTGGTGCTACTGGGC
GAAATAGACCGTGAAAAGGAGCAGAAACTGCCACTCAAAGAGATATCCGT
CGATGAAATCCTGGACGCCCAGCGTAGGGAACAGGAGCAGCGGCAGGAGA
AACACCGCCTAGTATCCAAGGCACTAAAGGAACGAGGCCTGGCCGTAGAT
GCCAACATAATCAACGAGGACTTCTGCTAAAAGCTTTCTAGACCAT
BS17243.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:00:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LSm1-RA | 414 | CG4279-PA | 1..414 | 17..430 | 2055 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LSm1-RA | 588 | CG4279-RA | 78..492 | 16..430 | 2060 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21170300..21170485 | 257..72 | 930 | 100 | Minus |
2R | 25286936 | 2R | 21170065..21170238 | 430..257 | 870 | 100 | Minus |
2R | 25286936 | 2R | 21170540..21170595 | 71..16 | 265 | 98.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:00:30 has no hits.
BS17243.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:22:57 Download gff for
BS17243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4279-RA | 1..414 | 17..430 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:09 Download gff for
BS17243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4279-RA | 52..463 | 17..428 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:45 Download gff for
BS17243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LSm1-RA | 79..490 | 17..428 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:22:58 Download gff for
BS17243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4279-RA | 42..469 | 5..435 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:35 Download gff for
BS17243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LSm1-RA | 79..490 | 17..428 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:35 Download gff for
BS17243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21170067..21170238 | 257..428 | 100 | <- | Minus |
2R | 21170301..21170485 | 72..256 | 100 | <- | Minus |
2R | 21170540..21170594 | 17..71 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:45 Download gff for
BS17243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17058045..17058099 | 17..71 | 98 | | Minus |
arm_2R | 17057572..17057743 | 257..428 | 100 | <- | Minus |
arm_2R | 17057806..17057990 | 72..256 | 100 | <- | Minus |
BS17243.3prime Sequence
444 bp (444 high quality bases) assembled on 2007-05-15
> BS17243.3prime
ATGGTCTAGAAAGCTTTTAGCAGAAGTCCTCGTTGATTATGTTGGCATCT
ACGGCCAGGCCTCGTTCCTTTAGTGCCTTGGATACTAGGCGGTGTTTCTC
CTGCCGCTGCTCCTGTTCCCTACGCTGGGCGTCCAGGATTTCATCGACGG
ATATCTCTTTGAGTGGCAGTTTCTGCTCCTTTTCACGGTCTATTTCGCCC
AGTAGCACCACATTCTCCCCGCGAATGATGAAGACTCCGCGAGGAATGTC
GCCGTATTCGTTGCCCACATGTATCCGCTCGATGGTGCGTTGCAGCACCA
GGTTGGCGAACTGGTCCACGGACCGCAGGTATCCAATCAGAGTCCGTCCG
TCTCTCAAAAGTACCATCAGTTTCTTGTCAACCTCTTCCAGGAGGTGAGC
AGTGCCCGCCAGCGGATTTAAGTCGTCCATGTCGACTGATAACT
BS17243.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:18:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4279-PA | 414 | CG4279-RA | 1..414 | 430..17 | 2045 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:35:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LSm1-RA | 588 | CG4279-RA | 78..492 | 431..17 | 2060 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:35:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21170300..21170485 | 190..375 | 930 | 100 | Plus |
2R | 25286936 | 2R | 21170065..21170238 | 17..190 | 870 | 100 | Plus |
2R | 25286936 | 2R | 21170540..21170595 | 376..431 | 265 | 98.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:35:35 has no hits.
BS17243.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:18:11 Download gff for
BS17243.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4279-PA | 1..414 | 17..430 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:50:18 Download gff for
BS17243.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LSm1-RA | 68..496 | 12..444 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:08:52 Download gff for
BS17243.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LSm1-RA | 68..496 | 12..444 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:08:52 Download gff for
BS17243.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21170061..21170238 | 12..190 | 98 | <- | Plus |
2R | 21170301..21170485 | 191..375 | 100 | <- | Plus |
2R | 21170540..21170605 | 376..444 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:50:18 Download gff for
BS17243.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17057566..17057743 | 12..190 | 98 | <- | Plus |
arm_2R | 17057806..17057990 | 191..375 | 100 | <- | Plus |
arm_2R | 17058045..17058110 | 376..444 | 91 | | Plus |
BS17243.5prime Sequence
444 bp (444 high quality bases) assembled on 2007-05-15
> BS17243.5prime
GAAGTTATCAGTCGACATGGACGACTTAAATCCGCTGGCGGGCACTGCTC
ACCTCCTGGAAGAGGTTGACAAGAAACTGATGGTACTTTTGAGAGACGGA
CGGACTCTGATTGGATACCTGCGGTCCGTGGACCAGTTCGCCAACCTGGT
GCTGCAACGCACCATCGAGCGGATACATGTGGGCAACGAATACGGCGACA
TTCCTCGCGGAGTCTTCATCATTCGCGGGGAGAATGTGGTGCTACTGGGC
GAAATAGACCGTGAAAAGGAGCAGAAACTGCCACTCAAAGAGATATCCGT
CGATGAAATCCTGGACGCCCAGCGTAGGGAACAGGAGCAGCGGCAGGAGA
AACACCGCCTAGTATCCAAGGCACTAAAGGAACGAGGCCTGGCCGTAGAT
GCCAACATAATCAACGAGGACTTCTGCTAAAAGCTTTCTAGACC
BS17243.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:11:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4279-PA | 414 | CG4279-RA | 1..414 | 17..430 | 2045 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:51:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LSm1-RA | 588 | CG4279-RA | 78..492 | 16..430 | 2060 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:51:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21170300..21170485 | 257..72 | 930 | 100 | Minus |
2R | 25286936 | 2R | 21170065..21170238 | 430..257 | 870 | 100 | Minus |
2R | 25286936 | 2R | 21170540..21170595 | 71..16 | 265 | 98.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:51:23 has no hits.
BS17243.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:11:35 Download gff for
BS17243.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4279-PA | 1..414 | 17..430 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:10:21 Download gff for
BS17243.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LSm1-RA | 69..496 | 5..435 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:17 Download gff for
BS17243.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LSm1-RA | 69..496 | 5..435 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:17 Download gff for
BS17243.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21170540..21170603 | 5..71 | 92 | | Minus |
2R | 21170061..21170238 | 257..435 | 98 | <- | Minus |
2R | 21170301..21170485 | 72..256 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:10:21 Download gff for
BS17243.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17057566..17057743 | 257..435 | 98 | <- | Minus |
arm_2R | 17057806..17057990 | 72..256 | 100 | <- | Minus |
arm_2R | 17058045..17058108 | 5..71 | 92 | | Minus |
BS17243.pep Sequence
Translation from 16 to 429
> BS17243.pep
MDDLNPLAGTAHLLEEVDKKLMVLLRDGRTLIGYLRSVDQFANLVLQRTI
ERIHVGNEYGDIPRGVFIIRGENVVLLGEIDREKEQKLPLKEISVDEILD
AQRREQEQRQEKHRLVSKALKERGLAVDANIINEDFC*
BS17243.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:02:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LSm1-PA | 137 | CG4279-PA | 1..137 | 1..137 | 686 | 100 | Plus |