Clone Sequence Records
BS17245.complete Sequence
482 bp assembled on 2010-02-09
GenBank Submission: KX801592
> BS17245.complete
GAAGTTATCAGTCGACATGGGATATTATCTGAAGCACGTGATGACTGGAT
ATCGCGTTTACCTGAACACTGGTATTCATTTACTGGGAAAGAGCGGAGCT
TGCAATGTGGTACTAACCTACGACAATATGTCCGATATCCATGCCGTCGT
TGTTGTTCGAAATGGGAGGATTTTCATTAAAGACCTGGAATCCATCCATG
GCATATATCTTAACTTCAAGGAACACCGCCTTGGCTCTGAGTTTTATGAA
ATTTTCGTGGGCGACGATGTGGCCTTTGGGGTTGCAACATTCGGACAGGA
ACTGGGCACTCCGCTTACGTACGGATGCTTTACCGTTAGGTCGGAGGATT
CAGATTTTGATCTAGACTTCTCCGATTCTGAGGACGGCTTCTTCGATTTC
GATGACGACGACAGCGACCAGTTCTATGGGATCAACGAGAACGAGGAGCC
ACCCAGTTCCACATAAAAGCTTTCTAGACCAT
BS17245.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:01:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hog-RA | 450 | CG32595-PA | 1..450 | 17..466 | 2235 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hog-RA | 611 | CG32595-RA | 79..530 | 17..468 | 2245 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14718354..14718635 | 468..187 | 1395 | 99.6 | Minus |
| X | 23542271 | X | 14718693..14718864 | 188..17 | 860 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:01:22 has no hits.
BS17245.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:31 Download gff for
BS17245.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32595-RA | 1..450 | 17..466 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:16 Download gff for
BS17245.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32595-RA | 1..448 | 17..464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:10 Download gff for
BS17245.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32595-RA | 79..526 | 17..464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:31 Download gff for
BS17245.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32595-RA | 1..450 | 17..466 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:55 Download gff for
BS17245.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hog-RA | 79..526 | 17..464 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:55 Download gff for
BS17245.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14718358..14718634 | 188..464 | 99 | <- | Minus |
| X | 14718694..14718864 | 17..187 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:10 Download gff for
BS17245.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14612391..14612667 | 188..464 | 99 | <- | Minus |
| arm_X | 14612727..14612897 | 17..187 | 100 | | Minus |
BS17245.3prime Sequence
480 bp (480 high quality bases) assembled on 2007-05-15
> BS17245.3prime
ATGGTCTAGAAAGCTTTTATGTGGAACTGGGTGGCTCCTCGTTCTCGTTG
ATCCCATAGAACTGGTCGCTGTCGTCGTCATCGAAATCGAAGAAGCCGTC
CTCAGAATCGGAGAAGTCTAGATCAAAATCTGAATCCTCCGACCTAACGG
TAAAGCATCCGTACGTAAGCGGAGTGCCCAGTTCCTGTCCGAATGTTGCA
ACCCCAAAGGCCACATCGTCGCCCACGAAAATTTCATAAAACTCAGAGCC
AAGGCGGTGTTCCTTGAAGTTAAGATATATGCCATGGATGGATTCCAGGT
CTTTAATGAAAATCCTCCCATTTCGAACAACAACGACGGCATGGATATCG
GACATATTGTCGTAGGTTAGTACCACATTGCAAGCTCCGCTCTTTCCCAG
TAAATGAATACCAGTGTTCAGGTAAACGCGATATCCAGTCATCACGTGCT
TCAGATAATATCCCATGTCGACTGATAACT
BS17245.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:18:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32595-PA | 450 | CG32595-RA | 1..450 | 466..17 | 2225 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:27:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hog-RA | 611 | CG32595-RA | 79..530 | 466..15 | 2245 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:27:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14718354..14718635 | 15..296 | 1395 | 99.6 | Plus |
| X | 23542271 | X | 14718693..14718864 | 295..466 | 860 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:27:33 has no hits.
BS17245.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:18:29 Download gff for
BS17245.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32595-PA | 1..450 | 17..466 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:16:48 Download gff for
BS17245.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32595-RA | 79..530 | 15..466 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:50:17 Download gff for
BS17245.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hog-RA | 79..530 | 15..466 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:50:17 Download gff for
BS17245.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14718354..14718634 | 15..295 | 99 | <- | Plus |
| X | 14718694..14718864 | 296..466 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:16:48 Download gff for
BS17245.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14612387..14612667 | 15..295 | 99 | <- | Plus |
| arm_X | 14612727..14612897 | 296..466 | 100 | | Plus |
BS17245.5prime Sequence
480 bp (480 high quality bases) assembled on 2007-05-15
> BS17245.5prime
GAAGTTATCAGTCGACATGGGATATTATCTGAAGCACGTGATGACTGGAT
ATCGCGTTTACCTGAACACTGGTATTCATTTACTGGGAAAGAGCGGAGCT
TGCAATGTGGTACTAACCTACGACAATATGTCCGATATCCATGCCGTCGT
TGTTGTTCGAAATGGGAGGATTTTCATTAAAGACCTGGAATCCATCCATG
GCATATATCTTAACTTCAAGGAACACCGCCTTGGCTCTGAGTTTTATGAA
ATTTTCGTGGGCGACGATGTGGCCTTTGGGGTTGCAACATTCGGACAGGA
ACTGGGCACTCCGCTTACGTACGGATGCTTTACCGTTAGGTCGGAGGATT
CAGATTTTGATCTAGACTTCTCCGATTCTGAGGACGGCTTCTTCGATTTC
GATGACGACGACAGCGACCAGTTCTATGGGATCAACGAGAACGAGGAGCC
ACCCAGTTCCACATAAAAGCTTTCTAGACC
BS17245.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:11:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32595-PA | 450 | CG32595-RA | 1..450 | 17..466 | 2225 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:39:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hog-RA | 611 | CG32595-RA | 79..530 | 17..468 | 2245 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:39:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14718354..14718635 | 468..187 | 1395 | 99.6 | Minus |
| X | 23542271 | X | 14718693..14718864 | 188..17 | 860 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:39:15 has no hits.
BS17245.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:11:53 Download gff for
BS17245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32595-PA | 1..450 | 17..466 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:47:36 Download gff for
BS17245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32595-RA | 79..530 | 17..468 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:23:44 Download gff for
BS17245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hog-RA | 79..530 | 17..468 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:23:44 Download gff for
BS17245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14718354..14718634 | 188..468 | 99 | <- | Minus |
| X | 14718694..14718864 | 17..187 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:47:36 Download gff for
BS17245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14612387..14612667 | 188..468 | 99 | <- | Minus |
| arm_X | 14612727..14612897 | 17..187 | 100 | | Minus |
BS17245.pep Sequence
Translation from 16 to 465
> BS17245.pep
MGYYLKHVMTGYRVYLNTGIHLLGKSGACNVVLTYDNMSDIHAVVVVRNG
RIFIKDLESIHGIYLNFKEHRLGSEFYEIFVGDDVAFGVATFGQELGTPL
TYGCFTVRSEDSDFDLDFSDSEDGFFDFDDDDSDQFYGINENEEPPSST*
BS17245.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:00:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hog-PA | 149 | CG32595-PA | 1..149 | 1..149 | 798 | 100 | Plus |
| CG34323-PA | 112 | CG34323-PA | 1..110 | 1..109 | 246 | 47.3 | Plus |
