Clone BS17246 Report

Search the DGRC for BS17246

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:172
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCG32639-RA
Protein status:BS17246.pep: full length peptide match
Sequenced Size:461

Clone Sequence Records

BS17246.3prime Sequence

459 bp (459 high quality bases) assembled on 2007-05-15

> BS17246.3prime
ATGGTCTAGAAAGCTTCTAGTGAAAATAATTGGCGAATGCCCTTCGCAAC
TTGCCAAAAACGCCAAGTCCACCGGCCGTACTTCGCTCCCTTGATGGCTT
GGGATTAAGGGATGGATCATCCTCCATACGACCCACATGCCAGTGGATCT
GCACGTTGCACACCACCAGACGCTTGGCCATTAGAACGCCCAGCTGCAGA
TGCTCCGCGGTTGCGAATCTCAGCTCTAGACCATTCTTCCTTTTGCGATG
CGCGTTCATCGAACAGAAGCGTGAGAAAATGGCCAGCAATTCATCATCGG
TGCCGGATGGAAATCCGTGCAAGCTCAGCCACTCGTTGCTGGTCAGATCA
TCCGAGGAACCACCGGTTCTGGCCTGCTCCACATCCGGTTCCGGTCCCTC
ATCGCTATCACTTTCAGTTTGGCTCTGAGAACTGTACTCAGTCATGTCGA
CTGATAACT

BS17246.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:21:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG32639-PA 429 CG32639-RA 1..429 445..17 2145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:09:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG32639-RA 642 CG32639-RA 43..472 446..17 2150 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:09:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13236095..13236524 17..446 2150 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:09:57 has no hits.

BS17246.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:21:42 Download gff for BS17246.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32639-PA 1..429 17..445 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:19:02 Download gff for BS17246.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32639-RA 34..476 11..453 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:27:32 Download gff for BS17246.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32639-RA 34..476 11..453 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:27:32 Download gff for BS17246.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13236091..13236533 11..453 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:19:02 Download gff for BS17246.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13130124..13130566 11..453 98   Plus

BS17246.5prime Sequence

459 bp (459 high quality bases) assembled on 2007-05-15

> BS17246.5prime
GAAGTTATCAGTCGACATGACTGAGTACAGTTCTCAGAGCCAAACTGAAA
GTGATAGCGATGAGGGACCGGAACCGGATGTGGAGCAGGCCAGAACCGGT
GGTTCCTCGGATGATCTGACCAGCAACGAGTGGCTGAGCTTGCACGGATT
TCCATCCGGCACCGATGATGAATTGCTGGCCATTTTCTCACGCTTCTGTT
CGATGAACGCGCATCGCAAAAGGAAGAATGGTCTAGAGCTGAGATTCGCA
ACCGCGGAGCATCTGCAGCTGGGCGTTCTAATGGCCAAGCGTCTGGTGGT
GTGCAACGTGCAGATCCACTGGCATGTGGGTCGTATGGAGGATGATCCAT
CCCTTAATCCCAAGCCATCAAGGGAGCGAAGTACGGCCGGTGGACTTGGC
GTTTTTGGCAAGTTGCGAAGGGCATTCGCCAATTATTTTCACTAGAAGCT
TTCTAGACC

BS17246.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:14:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG32639-PA 429 CG32639-RA 1..429 17..445 2145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:09:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG32639-RA 642 CG32639-RA 43..472 16..445 2150 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:09:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13236095..13236524 445..16 2150 100 Minus
Blast to na_te.dros performed on 2015-02-04 21:09:54 has no hits.

BS17246.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:14:57 Download gff for BS17246.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32639-PA 1..429 17..445 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:30:02 Download gff for BS17246.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32639-RA 34..476 9..451 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:55:28 Download gff for BS17246.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32639-RA 34..476 9..451 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:55:28 Download gff for BS17246.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13236091..13236533 9..451 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:30:02 Download gff for BS17246.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13130124..13130566 9..451 98   Minus

BS17246.complete Sequence

461 bp assembled on 2010-02-09

GenBank Submission: KX804468

> BS17246.complete
GAAGTTATCAGTCGACATGACTGAGTACAGTTCTCAGAGCCAAACTGAAA
GTGATAGCGATGAGGGACCGGAACCGGATGTGGAGCAGGCCAGAACCGGT
GGTTCCTCGGATGATCTGACCAGCAACGAGTGGCTGAGCTTGCACGGATT
TCCATCCGGCACCGATGATGAATTGCTGGCCATTTTCTCACGCTTCTGTT
CGATGAACGCGCATCGCAAAAGGAAGAATGGTCTAGAGCTGAGATTCGCA
ACCGCGGAGCATCTGCAGCTGGGCGTTCTAATGGCCAAGCGTCTGGTGGT
GTGCAACGTGCAGATCCACTGGCATGTGGGTCGTATGGAGGATGATCCAT
CCCTTAATCCCAAGCCATCAAGGGAGCGAAGTACGGCCGGTGGACTTGGC
GTTTTTGGCAAGTTGCGAAGGGCATTCGCCAATTATTTTCACTAGAAGCT
TTCTAGACCAT

BS17246.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:35:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG32639-RA 429 CG32639-PA 1..429 17..445 2145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:35:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG32639-RA 642 CG32639-RA 43..472 16..445 2150 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:35:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13236095..13236524 445..16 2150 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:35:16 has no hits.

BS17246.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:38:40 Download gff for BS17246.complete
Subject Subject Range Query Range Percent Splice Strand
CG32639-RA 1..429 17..445 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:23 Download gff for BS17246.complete
Subject Subject Range Query Range Percent Splice Strand
CG32639-RA 1..429 17..445 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:13 Download gff for BS17246.complete
Subject Subject Range Query Range Percent Splice Strand
CG32639-RA 44..472 17..445 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:38:41 Download gff for BS17246.complete
Subject Subject Range Query Range Percent Splice Strand
CG32639-RA 1..429 17..445 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:32:15 Download gff for BS17246.complete
Subject Subject Range Query Range Percent Splice Strand
CG32639-RA 44..472 17..445 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:32:15 Download gff for BS17246.complete
Subject Subject Range Query Range Percent Splice Strand
X 13236095..13236523 17..445 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:13 Download gff for BS17246.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13130128..13130556 17..445 100   Minus

BS17246.pep Sequence

Translation from 16 to 444

> BS17246.pep
MTEYSSQSQTESDSDEGPEPDVEQARTGGSSDDLTSNEWLSLHGFPSGTD
DELLAIFSRFCSMNAHRKRKNGLELRFATAEHLQLGVLMAKRLVVCNVQI
HWHVGRMEDDPSLNPKPSRERSTAGGLGVFGKLRRAFANYFH*

BS17246.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:00:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG32639-PA 142 CG32639-PA 1..142 1..142 751 100 Plus