Clone BS17247 Report

Search the DGRC for BS17247

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:172
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG7211-RA
Protein status:BS17247.pep: full length peptide match
Sequenced Size:356

Clone Sequence Records

BS17247.complete Sequence

356 bp assembled on 2010-02-09

GenBank Submission: KX804235

> BS17247.complete
GAAGTTATCAGTCGACATGAGTCAATTGATTGCCAAGGCAAAGACCCTAG
TAAACAAAATGATTGTGGCAGCACGTCCGCAGCTCGATGAATTCTGGAAG
TATGCCAAGGTGGAGCTATCACCGCCGCTGCCCGCTGATTTCCAAAAGCT
GAAGCAGACCGCTGAGTCCGCCAAGTTGGCCTCCAAAAAGGATATGAAGG
GGCAGCTAAAGAAGTCCGGACTTTCCCAAGTGACAGTCGCTGAGGCCTGG
CTAAATGTTCTGGTCACCGTGGAGGTGATTACCTGGTTCTACATGGGCGA
GGTTATCGGTCGTCGTCACCTGGTCGGCTACAAGGTTTAGAAGCTTTCTA
GACCAT

BS17247.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:40:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG7211-RA 324 CG7211-PA 1..324 17..340 1620 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG7211-RA 547 CG7211-RA 107..431 17..341 1625 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:40:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7747474..7747758 57..341 1425 100 Plus
2L 23513712 2L 7747381..7747420 17..56 200 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:40:30 has no hits.

BS17247.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:21 Download gff for BS17247.complete
Subject Subject Range Query Range Percent Splice Strand
CG7211-RA 1..324 17..340 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:13:03 Download gff for BS17247.complete
Subject Subject Range Query Range Percent Splice Strand
CG7211-RA 39..362 17..340 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:17 Download gff for BS17247.complete
Subject Subject Range Query Range Percent Splice Strand
CG7211-RA 107..430 17..340 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:21 Download gff for BS17247.complete
Subject Subject Range Query Range Percent Splice Strand
CG7211-RA 32..363 9..341 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:34:25 Download gff for BS17247.complete
Subject Subject Range Query Range Percent Splice Strand
CG7211-RA 107..430 17..340 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:34:25 Download gff for BS17247.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7747381..7747420 17..56 100 -> Plus
2L 7747474..7747757 57..340 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:17 Download gff for BS17247.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7747381..7747420 17..56 100 -> Plus
arm_2L 7747474..7747757 57..340 100   Plus

BS17247.5prime Sequence

354 bp (354 high quality bases) assembled on 2007-05-15

> BS17247.5prime
GAAGTTATCAGTCGACATGAGTCAATTGATTGCCAAGGCAAAGACCCTAG
TAAACAAAATGATTGTGGCAGCACGTCCGCAGCTCGATGAATTCTGGAAG
TATGCCAAGGTGGAGCTATCACCGCCGCTGCCCGCTGATTTCCAAAAGCT
GAAGCAGACCGCTGAGTCCGCCAAGTTGGCCTCCAAAAAGGATATGAAGG
GGCAGCTAAAGAAGTCCGGACTTTCCCAAGTGACAGTCGCTGAGGCCTGG
CTAAATGTTCTGGTCACCGTGGAGGTGATTACCTGGTTCTACATGGGCGA
GGTTATCGGTCGTCGTCACCTGGTCGGCTACAAGGTTTAGAAGCTTTCTA
GACC

BS17247.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:15:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG7211-PA 324 CG7211-RA 1..324 17..340 1620 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG7211-RA 547 CG7211-RA 107..431 17..341 1625 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:53:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7747474..7747758 57..341 1425 100 Plus
2L 23513712 2L 7747381..7747420 17..56 200 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:53:24 has no hits.

BS17247.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:15:04 Download gff for BS17247.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7211-PA 1..324 17..340 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:11:00 Download gff for BS17247.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7211-RA 100..431 9..341 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:47 Download gff for BS17247.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7211-RA 100..431 9..341 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:47 Download gff for BS17247.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7747374..7747420 9..56 91 -> Plus
2L 7747474..7747758 57..341 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:11:00 Download gff for BS17247.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7747374..7747420 9..56 91 -> Plus
arm_2L 7747474..7747758 57..341 100   Plus

BS17247.3prime Sequence

354 bp (354 high quality bases) assembled on 2007-05-15

> BS17247.3prime
ATGGTCTAGAAAGCTTCTAAACCTTGTAGCCGACCAGGTGACGACGACCG
ATAACCTCGCCCATGTAGAACCAGGTAATCACCTCCACGGTGACCAGAAC
ATTTAGCCAGGCCTCAGCGACTGTCACTTGGGAAAGTCCGGACTTCTTTA
GCTGCCCCTTCATATCCTTTTTGGAGGCCAACTTGGCGGACTCAGCGGTC
TGCTTCAGCTTTTGGAAATCAGCGGGCAGCGGCGGTGATAGCTCCACCTT
GGCATACTTCCAGAATTCATCGAGCTGCGGACGTGCTGCCACAATCATTT
TGTTTACTAGGGTCTTTGCCTTGGCAATCAATTGACTCATGTCGACTGAT
AACT

BS17247.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:21:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG7211-PA 324 CG7211-RA 1..324 340..17 1620 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG7211-RA 547 CG7211-RA 107..431 340..16 1625 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7747474..7747758 300..16 1425 100 Minus
2L 23513712 2L 7747381..7747420 340..301 200 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:10:39 has no hits.

BS17247.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:21:52 Download gff for BS17247.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7211-PA 1..324 17..340 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:19:09 Download gff for BS17247.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7211-RA 100..431 16..348 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:11:25 Download gff for BS17247.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7211-RA 100..431 16..348 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:11:25 Download gff for BS17247.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7747374..7747420 301..348 91 -> Minus
2L 7747474..7747758 16..300 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:19:09 Download gff for BS17247.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7747374..7747420 301..348 91 -> Minus
arm_2L 7747474..7747758 16..300 100   Minus

BS17247.pep Sequence

Translation from 16 to 339

> BS17247.pep
MSQLIAKAKTLVNKMIVAARPQLDEFWKYAKVELSPPLPADFQKLKQTAE
SAKLASKKDMKGQLKKSGLSQVTVAEAWLNVLVTVEVITWFYMGEVIGRR
HLVGYKV*

BS17247.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:45:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG7211-PA 107 CG7211-PA 1..107 1..107 538 100 Plus
l(2)06225-PD 99 CG6105-PD 1..99 1..107 261 51.4 Plus
l(2)06225-PB 99 CG6105-PB 1..99 1..107 261 51.4 Plus
l(2)06225-PA 99 CG6105-PA 1..99 1..107 261 51.4 Plus