Clone Sequence Records
BS17247.complete Sequence
356 bp assembled on 2010-02-09
GenBank Submission: KX804235
> BS17247.complete
GAAGTTATCAGTCGACATGAGTCAATTGATTGCCAAGGCAAAGACCCTAG
TAAACAAAATGATTGTGGCAGCACGTCCGCAGCTCGATGAATTCTGGAAG
TATGCCAAGGTGGAGCTATCACCGCCGCTGCCCGCTGATTTCCAAAAGCT
GAAGCAGACCGCTGAGTCCGCCAAGTTGGCCTCCAAAAAGGATATGAAGG
GGCAGCTAAAGAAGTCCGGACTTTCCCAAGTGACAGTCGCTGAGGCCTGG
CTAAATGTTCTGGTCACCGTGGAGGTGATTACCTGGTTCTACATGGGCGA
GGTTATCGGTCGTCGTCACCTGGTCGGCTACAAGGTTTAGAAGCTTTCTA
GACCAT
BS17247.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:40:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7211-RA | 324 | CG7211-PA | 1..324 | 17..340 | 1620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:40:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7211-RA | 547 | CG7211-RA | 107..431 | 17..341 | 1625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:40:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7747474..7747758 | 57..341 | 1425 | 100 | Plus |
2L | 23513712 | 2L | 7747381..7747420 | 17..56 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:40:30 has no hits.
BS17247.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:21 Download gff for
BS17247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7211-RA | 1..324 | 17..340 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:13:03 Download gff for
BS17247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7211-RA | 39..362 | 17..340 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:17 Download gff for
BS17247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7211-RA | 107..430 | 17..340 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:21 Download gff for
BS17247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7211-RA | 32..363 | 9..341 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:34:25 Download gff for
BS17247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7211-RA | 107..430 | 17..340 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:34:25 Download gff for
BS17247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7747381..7747420 | 17..56 | 100 | -> | Plus |
2L | 7747474..7747757 | 57..340 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:17 Download gff for
BS17247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7747381..7747420 | 17..56 | 100 | -> | Plus |
arm_2L | 7747474..7747757 | 57..340 | 100 | | Plus |
BS17247.5prime Sequence
354 bp (354 high quality bases) assembled on 2007-05-15
> BS17247.5prime
GAAGTTATCAGTCGACATGAGTCAATTGATTGCCAAGGCAAAGACCCTAG
TAAACAAAATGATTGTGGCAGCACGTCCGCAGCTCGATGAATTCTGGAAG
TATGCCAAGGTGGAGCTATCACCGCCGCTGCCCGCTGATTTCCAAAAGCT
GAAGCAGACCGCTGAGTCCGCCAAGTTGGCCTCCAAAAAGGATATGAAGG
GGCAGCTAAAGAAGTCCGGACTTTCCCAAGTGACAGTCGCTGAGGCCTGG
CTAAATGTTCTGGTCACCGTGGAGGTGATTACCTGGTTCTACATGGGCGA
GGTTATCGGTCGTCGTCACCTGGTCGGCTACAAGGTTTAGAAGCTTTCTA
GACC
BS17247.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:15:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7211-PA | 324 | CG7211-RA | 1..324 | 17..340 | 1620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:53:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7211-RA | 547 | CG7211-RA | 107..431 | 17..341 | 1625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:53:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7747474..7747758 | 57..341 | 1425 | 100 | Plus |
2L | 23513712 | 2L | 7747381..7747420 | 17..56 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:53:24 has no hits.
BS17247.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:15:04 Download gff for
BS17247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7211-PA | 1..324 | 17..340 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:11:00 Download gff for
BS17247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7211-RA | 100..431 | 9..341 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:47 Download gff for
BS17247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7211-RA | 100..431 | 9..341 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:47 Download gff for
BS17247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7747374..7747420 | 9..56 | 91 | -> | Plus |
2L | 7747474..7747758 | 57..341 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:11:00 Download gff for
BS17247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7747374..7747420 | 9..56 | 91 | -> | Plus |
arm_2L | 7747474..7747758 | 57..341 | 100 | | Plus |
BS17247.3prime Sequence
354 bp (354 high quality bases) assembled on 2007-05-15
> BS17247.3prime
ATGGTCTAGAAAGCTTCTAAACCTTGTAGCCGACCAGGTGACGACGACCG
ATAACCTCGCCCATGTAGAACCAGGTAATCACCTCCACGGTGACCAGAAC
ATTTAGCCAGGCCTCAGCGACTGTCACTTGGGAAAGTCCGGACTTCTTTA
GCTGCCCCTTCATATCCTTTTTGGAGGCCAACTTGGCGGACTCAGCGGTC
TGCTTCAGCTTTTGGAAATCAGCGGGCAGCGGCGGTGATAGCTCCACCTT
GGCATACTTCCAGAATTCATCGAGCTGCGGACGTGCTGCCACAATCATTT
TGTTTACTAGGGTCTTTGCCTTGGCAATCAATTGACTCATGTCGACTGAT
AACT
BS17247.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:21:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7211-PA | 324 | CG7211-RA | 1..324 | 340..17 | 1620 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7211-RA | 547 | CG7211-RA | 107..431 | 340..16 | 1625 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7747474..7747758 | 300..16 | 1425 | 100 | Minus |
2L | 23513712 | 2L | 7747381..7747420 | 340..301 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:10:39 has no hits.
BS17247.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:21:52 Download gff for
BS17247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7211-PA | 1..324 | 17..340 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:19:09 Download gff for
BS17247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7211-RA | 100..431 | 16..348 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:11:25 Download gff for
BS17247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7211-RA | 100..431 | 16..348 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:11:25 Download gff for
BS17247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7747374..7747420 | 301..348 | 91 | -> | Minus |
2L | 7747474..7747758 | 16..300 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:19:09 Download gff for
BS17247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7747374..7747420 | 301..348 | 91 | -> | Minus |
arm_2L | 7747474..7747758 | 16..300 | 100 | | Minus |
BS17247.pep Sequence
Translation from 16 to 339
> BS17247.pep
MSQLIAKAKTLVNKMIVAARPQLDEFWKYAKVELSPPLPADFQKLKQTAE
SAKLASKKDMKGQLKKSGLSQVTVAEAWLNVLVTVEVITWFYMGEVIGRR
HLVGYKV*
BS17247.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:45:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7211-PA | 107 | CG7211-PA | 1..107 | 1..107 | 538 | 100 | Plus |
l(2)06225-PD | 99 | CG6105-PD | 1..99 | 1..107 | 261 | 51.4 | Plus |
l(2)06225-PB | 99 | CG6105-PB | 1..99 | 1..107 | 261 | 51.4 | Plus |
l(2)06225-PA | 99 | CG6105-PA | 1..99 | 1..107 | 261 | 51.4 | Plus |