Clone BS17249 Report

Search the DGRC for BS17249

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:172
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptCG13042-RA
Protein status:BS17249.pep: full length peptide match
Sequenced Size:386

Clone Sequence Records

BS17249.complete Sequence

386 bp assembled on 2010-02-09

GenBank Submission: KX800637

> BS17249.complete
GAAGTTATCAGTCGACATGTACAAGTTGGTGGTGTTCTTCGCTCTGCTCG
CCGTCGTGGCTGCCCGTCCGGGTTATTTGGAGTCTGGTCCACTGCTCCAC
AGCTATGCCGCTCCTGCCATCATCCATGAACCGGCTCTGGCCAAGGTGGG
CGCCATCATCAAGACCGTGCCCAGTGCCGTCTCCCACCAGAGCATCAGCC
AGGTGCACAGCTCGGCCCACATCATCCAACCGATTGTGGCTCCGGTGGTG
AAGACCTATGCCGCTCCCATCATCAAGACTTATGCGGCTCCTGCCCTCCA
CACGACCCTCCTCTCGTCTCCGTGGGCCGGACATGGTTGGGCTGGCCATG
GCTGGGCTCCGTCCTGGTAAAAGCTTTCTAGACCAT

BS17249.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:58:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG13042-RA 354 CG13042-PA 1..354 17..370 1770 100 Plus
CG13043-RA 447 CG13043-PA 107..183 117..193 175 81.8 Plus
CG13044-RA 468 CG13044-PA 110..198 123..211 175 79.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG13042-RA 571 CG13042-RA 66..420 17..371 1775 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16307997..16308340 371..28 1720 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:58:13 has no hits.

BS17249.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:07 Download gff for BS17249.complete
Subject Subject Range Query Range Percent Splice Strand
CG13042-RA 1..354 17..370 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:13:31 Download gff for BS17249.complete
Subject Subject Range Query Range Percent Splice Strand
CG13042-RA 1..352 17..368 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:31:38 Download gff for BS17249.complete
Subject Subject Range Query Range Percent Splice Strand
CG13042-RA 66..417 17..368 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:07 Download gff for BS17249.complete
Subject Subject Range Query Range Percent Splice Strand
CG13042-RA 1..354 17..370 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:48 Download gff for BS17249.complete
Subject Subject Range Query Range Percent Splice Strand
CG13042-RA 66..417 17..368 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:48 Download gff for BS17249.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16308000..16308342 23..368 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:31:38 Download gff for BS17249.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16301100..16301442 23..368 99   Minus

BS17249.3prime Sequence

384 bp (384 high quality bases) assembled on 2007-05-15

> BS17249.3prime
ATGGTCTAGAAAGCTTTTACCAGGACGGAGCCCAGCCATGGCCAGCCCAA
CCATGTCCGGCCCACGGAGACGAGAGGAGGGTCGTGTGGAGGGCAGGAGC
CGCATAAGTCTTGATGATGGGAGCGGCATAGGTCTTCACCACCGGAGCCA
CAATCGGTTGGATGATGTGGGCCGAGCTGTGCACCTGGCTGATGCTCTGG
TGGGAGACGGCACTGGGCACGGTCTTGATGATGGCGCCCACCTTGGCCAG
AGCCGGTTCATGGATGATGGCAGGAGCGGCATAGCTGTGGAGCAGTGGAC
CAGACTCCAAATAACCCGGACGGGCAGCCACGACGGCGAGCAGAGCGAAG
AACACCACCAACTTGTACATGTCGACTGATAACT

BS17249.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:18:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG13042-PA 354 CG13042-RA 1..354 370..17 1770 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG13042-RA 571 CG13042-RA 66..420 370..16 1775 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16307997..16308340 16..359 1720 100 Plus
Blast to na_te.dros performed on 2015-02-11 22:08:54 has no hits.

BS17249.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:18:34 Download gff for BS17249.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13042-PA 1..354 17..370 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:29:40 Download gff for BS17249.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13042-RA 57..420 16..380 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:46:10 Download gff for BS17249.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13042-RA 57..420 16..380 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:46:10 Download gff for BS17249.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16307997..16308342 16..364 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:29:40 Download gff for BS17249.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16301097..16301442 16..364 99   Plus

BS17249.5prime Sequence

384 bp (384 high quality bases) assembled on 2007-05-15

> BS17249.5prime
GAAGTTATCAGTCGACATGTACAAGTTGGTGGTGTTCTTCGCTCTGCTCG
CCGTCGTGGCTGCCCGTCCGGGTTATTTGGAGTCTGGTCCACTGCTCCAC
AGCTATGCCGCTCCTGCCATCATCCATGAACCGGCTCTGGCCAAGGTGGG
CGCCATCATCAAGACCGTGCCCAGTGCCGTCTCCCACCAGAGCATCAGCC
AGGTGCACAGCTCGGCCCACATCATCCAACCGATTGTGGCTCCGGTGGTG
AAGACCTATGCCGCTCCCATCATCAAGACTTATGCGGCTCCTGCCCTCCA
CACGACCCTCCTCTCGTCTCCGTGGGCCGGACATGGTTGGGCTGGCCATG
GCTGGGCTCCGTCCTGGTAAAAGCTTTCTAGACC

BS17249.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:11:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG13042-PA 354 CG13042-RA 1..354 17..370 1770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:39:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG13042-RA 571 CG13042-RA 66..420 17..371 1775 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16307997..16308340 371..28 1720 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:39:26 has no hits.

BS17249.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:11:57 Download gff for BS17249.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13042-PA 1..354 17..370 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:47:39 Download gff for BS17249.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13042-RA 57..420 7..371 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:24:08 Download gff for BS17249.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13042-RA 57..420 7..371 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:24:08 Download gff for BS17249.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16307997..16308342 23..371 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:47:39 Download gff for BS17249.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16301097..16301442 23..371 99   Minus

BS17249.pep Sequence

Translation from 16 to 369

> BS17249.pep
MYKLVVFFALLAVVAARPGYLESGPLLHSYAAPAIIHEPALAKVGAIIKT
VPSAVSHQSISQVHSSAHIIQPIVAPVVKTYAAPIIKTYAAPALHTTLLS
SPWAGHGWAGHGWAPSW*

BS17249.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:57:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG13042-PA 117 CG13042-PA 1..117 1..117 611 100 Plus
CG13043-PA 148 CG13043-PA 1..103 1..102 270 57.9 Plus
CG13044-PA 155 CG13044-PA 1..119 1..109 245 50 Plus
CG13063-PA 129 CG13063-PA 1..102 1..102 243 50 Plus
CG13041-PA 124 CG13041-PA 1..87 1..96 206 46.9 Plus