Clone Sequence Records
BS17249.complete Sequence
386 bp assembled on 2010-02-09
GenBank Submission: KX800637
> BS17249.complete
GAAGTTATCAGTCGACATGTACAAGTTGGTGGTGTTCTTCGCTCTGCTCG
CCGTCGTGGCTGCCCGTCCGGGTTATTTGGAGTCTGGTCCACTGCTCCAC
AGCTATGCCGCTCCTGCCATCATCCATGAACCGGCTCTGGCCAAGGTGGG
CGCCATCATCAAGACCGTGCCCAGTGCCGTCTCCCACCAGAGCATCAGCC
AGGTGCACAGCTCGGCCCACATCATCCAACCGATTGTGGCTCCGGTGGTG
AAGACCTATGCCGCTCCCATCATCAAGACTTATGCGGCTCCTGCCCTCCA
CACGACCCTCCTCTCGTCTCCGTGGGCCGGACATGGTTGGGCTGGCCATG
GCTGGGCTCCGTCCTGGTAAAAGCTTTCTAGACCAT
BS17249.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:58:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13042-RA | 354 | CG13042-PA | 1..354 | 17..370 | 1770 | 100 | Plus |
CG13043-RA | 447 | CG13043-PA | 107..183 | 117..193 | 175 | 81.8 | Plus |
CG13044-RA | 468 | CG13044-PA | 110..198 | 123..211 | 175 | 79.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13042-RA | 571 | CG13042-RA | 66..420 | 17..371 | 1775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16307997..16308340 | 371..28 | 1720 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:58:13 has no hits.
BS17249.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:07 Download gff for
BS17249.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13042-RA | 1..354 | 17..370 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:13:31 Download gff for
BS17249.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13042-RA | 1..352 | 17..368 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:31:38 Download gff for
BS17249.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13042-RA | 66..417 | 17..368 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:07 Download gff for
BS17249.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13042-RA | 1..354 | 17..370 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:48 Download gff for
BS17249.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13042-RA | 66..417 | 17..368 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:48 Download gff for
BS17249.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16308000..16308342 | 23..368 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:31:38 Download gff for
BS17249.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16301100..16301442 | 23..368 | 99 | | Minus |
BS17249.3prime Sequence
384 bp (384 high quality bases) assembled on 2007-05-15
> BS17249.3prime
ATGGTCTAGAAAGCTTTTACCAGGACGGAGCCCAGCCATGGCCAGCCCAA
CCATGTCCGGCCCACGGAGACGAGAGGAGGGTCGTGTGGAGGGCAGGAGC
CGCATAAGTCTTGATGATGGGAGCGGCATAGGTCTTCACCACCGGAGCCA
CAATCGGTTGGATGATGTGGGCCGAGCTGTGCACCTGGCTGATGCTCTGG
TGGGAGACGGCACTGGGCACGGTCTTGATGATGGCGCCCACCTTGGCCAG
AGCCGGTTCATGGATGATGGCAGGAGCGGCATAGCTGTGGAGCAGTGGAC
CAGACTCCAAATAACCCGGACGGGCAGCCACGACGGCGAGCAGAGCGAAG
AACACCACCAACTTGTACATGTCGACTGATAACT
BS17249.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:18:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13042-PA | 354 | CG13042-RA | 1..354 | 370..17 | 1770 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:08:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13042-RA | 571 | CG13042-RA | 66..420 | 370..16 | 1775 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:08:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16307997..16308340 | 16..359 | 1720 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:08:54 has no hits.
BS17249.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:18:34 Download gff for
BS17249.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13042-PA | 1..354 | 17..370 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:29:40 Download gff for
BS17249.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13042-RA | 57..420 | 16..380 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:46:10 Download gff for
BS17249.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13042-RA | 57..420 | 16..380 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:46:10 Download gff for
BS17249.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16307997..16308342 | 16..364 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:29:40 Download gff for
BS17249.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16301097..16301442 | 16..364 | 99 | | Plus |
BS17249.5prime Sequence
384 bp (384 high quality bases) assembled on 2007-05-15
> BS17249.5prime
GAAGTTATCAGTCGACATGTACAAGTTGGTGGTGTTCTTCGCTCTGCTCG
CCGTCGTGGCTGCCCGTCCGGGTTATTTGGAGTCTGGTCCACTGCTCCAC
AGCTATGCCGCTCCTGCCATCATCCATGAACCGGCTCTGGCCAAGGTGGG
CGCCATCATCAAGACCGTGCCCAGTGCCGTCTCCCACCAGAGCATCAGCC
AGGTGCACAGCTCGGCCCACATCATCCAACCGATTGTGGCTCCGGTGGTG
AAGACCTATGCCGCTCCCATCATCAAGACTTATGCGGCTCCTGCCCTCCA
CACGACCCTCCTCTCGTCTCCGTGGGCCGGACATGGTTGGGCTGGCCATG
GCTGGGCTCCGTCCTGGTAAAAGCTTTCTAGACC
BS17249.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:11:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13042-PA | 354 | CG13042-RA | 1..354 | 17..370 | 1770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:39:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13042-RA | 571 | CG13042-RA | 66..420 | 17..371 | 1775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:39:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16307997..16308340 | 371..28 | 1720 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:39:26 has no hits.
BS17249.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:11:57 Download gff for
BS17249.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13042-PA | 1..354 | 17..370 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:47:39 Download gff for
BS17249.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13042-RA | 57..420 | 7..371 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:24:08 Download gff for
BS17249.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13042-RA | 57..420 | 7..371 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:24:08 Download gff for
BS17249.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16307997..16308342 | 23..371 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:47:39 Download gff for
BS17249.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16301097..16301442 | 23..371 | 99 | | Minus |
BS17249.pep Sequence
Translation from 16 to 369
> BS17249.pep
MYKLVVFFALLAVVAARPGYLESGPLLHSYAAPAIIHEPALAKVGAIIKT
VPSAVSHQSISQVHSSAHIIQPIVAPVVKTYAAPIIKTYAAPALHTTLLS
SPWAGHGWAGHGWAPSW*
BS17249.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:57:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13042-PA | 117 | CG13042-PA | 1..117 | 1..117 | 611 | 100 | Plus |
CG13043-PA | 148 | CG13043-PA | 1..103 | 1..102 | 270 | 57.9 | Plus |
CG13044-PA | 155 | CG13044-PA | 1..119 | 1..109 | 245 | 50 | Plus |
CG13063-PA | 129 | CG13063-PA | 1..102 | 1..102 | 243 | 50 | Plus |
CG13041-PA | 124 | CG13041-PA | 1..87 | 1..96 | 206 | 46.9 | Plus |