Clone Sequence Records
BS17253.complete Sequence
371 bp assembled on 2010-02-09
GenBank Submission: KX802584
> BS17253.complete
GAAGTTATCAGTCGACATGTCCTCCGATTCCACGCTGTACTTCAGTGCCG
TCGAGGATATGTTCAAGGAAGTGTTAACAATAGGGGACGAGAAGAGGGAT
CCTGGAAACGAGGATTTCTCCGAAACACCTAAACGTTGCGTACGATTGCG
CCAGCAAAAGTTGTTCGCGAACGATACCGCGAGTTTTGTGATAGGTCGCC
GTTCGCCGAGGATTGAATCCAAAATCGATCTCAACAGAGATGTATCTCCT
GGAAGGCGAAAGGAGCTGCGCGGCGAGGAAATCCTTCGGATGCGCAAGGA
TCGGGCGGAAAAGGAGCGTCTGAGGCCCCAAAGGCGTCTTACCATGCGGA
TTTAGAAGCTTTCTAGACCAT
BS17253.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:43:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13454-RA | 339 | CG13454-PA | 1..339 | 17..355 | 1695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:43:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13454-RA | 524 | CG13454-RA | 31..369 | 17..355 | 1695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:43:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15516688..15517026 | 355..17 | 1695 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:43:18 has no hits.
BS17253.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:28 Download gff for
BS17253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13454-RA | 1..339 | 17..355 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:13:12 Download gff for
BS17253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13454-RA | 27..365 | 17..355 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:45 Download gff for
BS17253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13454-RA | 31..369 | 17..355 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:28 Download gff for
BS17253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13454-RA | 15..368 | 7..359 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:35:30 Download gff for
BS17253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13454-RA | 31..369 | 17..355 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:35:30 Download gff for
BS17253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15516688..15517026 | 17..355 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:45 Download gff for
BS17253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15509788..15510126 | 17..355 | 100 | | Minus |
BS17253.3prime Sequence
369 bp (369 high quality bases) assembled on 2007-05-15
> BS17253.3prime
ATGGTCTAGAAAGCTTCTAAATCCGCATGGTAAGACGCCTTTGGGGCCTC
AGACGCTCCTTTTCCGCCCGATCCTTGCGCATCCGAAGGATTTCCTCGCC
GCGCAGCTCCTTTCGCCTTCCAGGAGATACATCTCTGTTGAGATCGATTT
TGGATTCAATCCTCGGCGAACGGCGACCTATCACAAAACTCGCGGTATCG
TTCGCGAACAACTTTTGCTGGCGCAATCGTACGCAACGTTTAGGTGTTTC
GGAGAAATCCTCGTTTCCAGGATCCCTCTTCTCGTCCCCTATTGTTAACA
CTTCCTTGAACATATCCTCGACGGCACTGAAGTACAGCGTGGAATCGGAG
GACATGTCGACTGATAACT
BS17253.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:22:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13454-PA | 339 | CG13454-RA | 1..339 | 355..17 | 1695 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 14:59:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13454-RA | 524 | CG13454-RA | 31..369 | 355..17 | 1695 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 14:59:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15516688..15517026 | 17..355 | 1695 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 14:59:45 has no hits.
BS17253.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:22:13 Download gff for
BS17253.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13454-PA | 1..339 | 17..355 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:19:26 Download gff for
BS17253.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13454-RA | 19..372 | 13..365 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:12:12 Download gff for
BS17253.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13454-RA | 19..372 | 13..365 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:12:12 Download gff for
BS17253.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15516685..15517038 | 13..365 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:19:26 Download gff for
BS17253.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15509785..15510138 | 13..365 | 98 | | Plus |
BS17253.5prime Sequence
369 bp (369 high quality bases) assembled on 2007-05-15
> BS17253.5prime
GAAGTTATCAGTCGACATGTCCTCCGATTCCACGCTGTACTTCAGTGCCG
TCGAGGATATGTTCAAGGAAGTGTTAACAATAGGGGACGAGAAGAGGGAT
CCTGGAAACGAGGATTTCTCCGAAACACCTAAACGTTGCGTACGATTGCG
CCAGCAAAAGTTGTTCGCGAACGATACCGCGAGTTTTGTGATAGGTCGCC
GTTCGCCGAGGATTGAATCCAAAATCGATCTCAACAGAGATGTATCTCCT
GGAAGGCGAAAGGAGCTGCGCGGCGAGGAAATCCTTCGGATGCGCAAGGA
TCGGGCGGAAAAGGAGCGTCTGAGGCCCCAAAGGCGTCTTACCATGCGGA
TTTAGAAGCTTTCTAGACC
BS17253.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:15:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13454-PA | 339 | CG13454-RA | 1..339 | 17..355 | 1695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:43:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13454-RA | 524 | CG13454-RA | 31..369 | 17..355 | 1695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:43:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15516688..15517026 | 355..17 | 1695 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:43:43 has no hits.
BS17253.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:15:23 Download gff for
BS17253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13454-PA | 1..339 | 17..355 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:26:19 Download gff for
BS17253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13454-RA | 19..372 | 7..359 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:29:11 Download gff for
BS17253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13454-RA | 19..372 | 7..359 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:29:11 Download gff for
BS17253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15516685..15517027 | 17..359 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:26:19 Download gff for
BS17253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15509785..15510127 | 17..359 | 99 | -> | Minus |
BS17253.pep Sequence
Translation from 16 to 354
> BS17253.pep
MSSDSTLYFSAVEDMFKEVLTIGDEKRDPGNEDFSETPKRCVRLRQQKLF
ANDTASFVIGRRSPRIESKIDLNRDVSPGRRKELRGEEILRMRKDRAEKE
RLRPQRRLTMRI*
BS17253.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:56:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13454-PA | 112 | CG13454-PA | 1..112 | 1..112 | 565 | 100 | Plus |
