Clone BS17254 Report

Search the DGRC for BS17254

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:172
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptCG13314-RA
Protein status:BS17254.pep: full length peptide match
Sequenced Size:413

Clone Sequence Records

BS17254.complete Sequence

413 bp assembled on 2010-02-09

GenBank Submission: KX802108

> BS17254.complete
GAAGTTATCAGTCGACATGCCGACCGCCTGCCAAGTAACGCTGCTCGCTG
GATGCCTGCTTCTGGCCATGAGTTCGGTTCGGGCCCAGTTCTTCTACCAC
CAGGCGCTGGGTCTGCCGGTTGCGCACGCTTACGAACCGGCCAATCCGTA
CCAGGGATATGCAACAGCCGATGCCCATCCCTCGGTGGTGCGAAATGCCC
AGTGGGAGTCTGAGTTGCCGGCTGAGCTGTCGAAGAGTGCGCGGTTCTAC
AATGATCCCGTGATCGCTGCCAATCTGGCCAAGGAATCACTGCTCACGAA
GAAGGAAATGGCAGTGGTACATCGTGAGGCGGAGAAAATACCGCGCGAAC
AGGTGTACAAGCTCTTCAAGAACGCCGGCTATCTGAGTAGCAGATAGAAG
CTTTCTAGACCAT

BS17254.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:58:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG13314-RB 381 CG13314-PB 1..381 17..397 1905 100 Plus
CG13314-RA 381 CG13314-PA 1..381 17..397 1905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:58
Subject Length Description Subject Range Query Range Score Percent Strand
Galk-RA 2669 CG5288-RA 1776..2159 399..16 1920 100 Minus
CG13314-RB 593 CG13314-RB 103..486 16..399 1920 100 Plus
CG13314-RA 789 CG13314-RA 299..682 16..399 1920 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8982722..8983105 16..399 1920 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:58:56 has no hits.

BS17254.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:20 Download gff for BS17254.complete
Subject Subject Range Query Range Percent Splice Strand
CG13314-RA 1..381 17..397 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:13:48 Download gff for BS17254.complete
Subject Subject Range Query Range Percent Splice Strand
CG13314-RA 1..381 17..397 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:31:58 Download gff for BS17254.complete
Subject Subject Range Query Range Percent Splice Strand
CG13314-RA 300..680 17..397 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:20 Download gff for BS17254.complete
Subject Subject Range Query Range Percent Splice Strand
CG13314-RA 1..381 17..397 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:03 Download gff for BS17254.complete
Subject Subject Range Query Range Percent Splice Strand
CG13314-RA 300..680 17..397 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:03 Download gff for BS17254.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8982723..8983103 17..397 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:31:58 Download gff for BS17254.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8975823..8976203 17..397 100   Plus

BS17254.5prime Sequence

411 bp (411 high quality bases) assembled on 2007-05-15

> BS17254.5prime
GAAGTTATCAGTCGACATGCCGACCGCCTGCCAAGTAACGCTGCTCGCTG
GATGCCTGCTTCTGGCCATGAGTTCGGTTCGGGCCCAGTTCTTCTACCAC
CAGGCGCTGGGTCTGCCGGTTGCGCACGCTTACGAACCGGCCAATCCGTA
CCAGGGATATGCAACAGCCGATGCCCATCCCTCGGTGGTGCGAAATGCCC
AGTGGGAGTCTGAGTTGCCGGCTGAGCTGTCGAAGAGTGCGCGGTTCTAC
AATGATCCCGTGATCGCTGCCAATCTGGCCAAGGAATCACTGCTCACGAA
GAAGGAAATGGCAGTGGTACATCGTGAGGCGGAGAAAATACCGCGCGAAC
AGGTGTACAAGCTCTTCAAGAACGCCGGCTATCTGAGTAGCAGATAGAAG
CTTTCTAGACC

BS17254.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:15:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG13314-PA 381 CG13314-RA 1..381 17..397 1905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:14:22
Subject Length Description Subject Range Query Range Score Percent Strand
Galk-RA 2669 CG5288-RA 1776..2159 399..16 1920 100 Minus
CG13314-RB 593 CG13314-RB 103..486 16..399 1920 100 Plus
CG13314-RA 789 CG13314-RA 299..682 16..399 1920 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:14:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8982722..8983105 16..399 1920 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:14:20 has no hits.

BS17254.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:15:31 Download gff for BS17254.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13314-PA 1..381 17..397 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:32:59 Download gff for BS17254.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13314-RA 291..684 9..402 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:26:42 Download gff for BS17254.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13314-RA 291..684 9..402 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:26:42 Download gff for BS17254.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8982714..8983107 9..402 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:32:59 Download gff for BS17254.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8975814..8976207 9..402 98   Plus

BS17254.3prime Sequence

411 bp (411 high quality bases) assembled on 2007-05-15

> BS17254.3prime
ATGGTCTAGAAAGCTTCTATCTGCTACTCAGATAGCCGGCGTTCTTGAAG
AGCTTGTACACCTGTTCGCGCGGTATTTTCTCCGCCTCACGATGTACCAC
TGCCATTTCCTTCTTCGTGAGCAGTGATTCCTTGGCCAGATTGGCAGCGA
TCACGGGATCATTGTAGAACCGCGCACTCTTCGACAGCTCAGCCGGCAAC
TCAGACTCCCACTGGGCATTTCGCACCACCGAGGGATGGGCATCGGCTGT
TGCATATCCCTGGTACGGATTGGCCGGTTCGTAAGCGTGCGCAACCGGCA
GACCCAGCGCCTGGTGGTAGAAGAACTGGGCCCGAACCGAACTCATGGCC
AGAAGCAGGCATCCAGCGAGCAGCGTTACTTGGCAGGCGGTCGGCATGTC
GACTGATAACT

BS17254.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:22:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG13314-PA 381 CG13314-RA 1..381 397..17 1905 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:00:44
Subject Length Description Subject Range Query Range Score Percent Strand
Galk-RA 2669 CG5288-RA 1776..2159 15..398 1920 100 Plus
CG13314-RB 593 CG13314-RB 103..486 398..15 1920 100 Minus
CG13314-RA 789 CG13314-RA 299..682 398..15 1920 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:00:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8982722..8983105 398..15 1920 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:00:41 has no hits.

BS17254.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:22:23 Download gff for BS17254.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13314-PA 1..381 17..397 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:19:32 Download gff for BS17254.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13314-RA 291..684 12..405 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:12:31 Download gff for BS17254.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13314-RA 291..684 12..405 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:12:31 Download gff for BS17254.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8982714..8983107 12..405 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:19:32 Download gff for BS17254.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8975814..8976207 12..405 98   Minus

BS17254.pep Sequence

Translation from 16 to 396

> BS17254.pep
MPTACQVTLLAGCLLLAMSSVRAQFFYHQALGLPVAHAYEPANPYQGYAT
ADAHPSVVRNAQWESELPAELSKSARFYNDPVIAANLAKESLLTKKEMAV
VHREAEKIPREQVYKLFKNAGYLSSR*

BS17254.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:58:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG13314-PB 126 CG13314-PB 1..126 1..126 647 100 Plus
CG13314-PA 126 CG13314-PA 1..126 1..126 647 100 Plus