Clone Sequence Records
BS17257.complete Sequence
350 bp assembled on 2010-02-09
GenBank Submission: KX805377
> BS17257.complete
GAAGTTATCAGTCGACATGGAGCAACTACTTTCTCGTCGCCGCAGATACA
GGGCCAAATGTGCCAAGAGGAGTGTCCGCAAATTCTTACCCGATTTGAAG
TGCAAGTCTGTGGAACGCATTAAATGCCAGATTAAGGATCTGCTGATCTT
AATGGTTCCGTCCAAGGATTTCTATAAGAACTCGTTGCGGTTCTACAAGC
GCTGCACAAAACCAGATCGTCGGGAGTTCCAGCGTATCAGCATTGGCATT
GGCGTAGGATTCCTTATCATGGGCTTGATTGGATTCGTCGTTAAGCTGAT
GCACATACCCATAGTCAACATCATCATGGACTGAAAGCTTTCTAGACCAT
BS17257.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:42:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13426-RA | 318 | CG13426-PA | 1..318 | 17..334 | 1590 | 100 | Plus |
| CG8860-RA | 207 | CG8860-PA | 67..199 | 197..329 | 200 | 76.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:42:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13426-RA | 418 | CG13426-RA | 58..375 | 17..334 | 1590 | 100 | Plus |
| CG8860-RA | 420 | CG8860-RA | 176..308 | 197..329 | 200 | 76.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:42:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20512740..20513006 | 334..68 | 1335 | 100 | Minus |
| 2R | 25286936 | 2R | 20513059..20513112 | 70..17 | 270 | 100 | Minus |
| 2R | 25286936 | 2R | 12179595..12179727 | 329..197 | 200 | 76.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:42:45 has no hits.
BS17257.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:14:03 Download gff for
BS17257.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13426-RA | 1..318 | 17..334 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:13:11 Download gff for
BS17257.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13426-RA | 58..374 | 17..333 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:40 Download gff for
BS17257.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13426-RA | 58..374 | 17..333 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:14:03 Download gff for
BS17257.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13426-RA | 58..380 | 17..339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:35:19 Download gff for
BS17257.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13426-RA | 58..374 | 17..333 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:35:19 Download gff for
BS17257.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20512741..20513004 | 70..333 | 100 | <- | Minus |
| 2R | 20513060..20513112 | 17..69 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:40 Download gff for
BS17257.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16400246..16400509 | 70..333 | 100 | <- | Minus |
| arm_2R | 16400565..16400617 | 17..69 | 100 | | Minus |
BS17257.5prime Sequence
348 bp (348 high quality bases) assembled on 2007-05-15
> BS17257.5prime
GAAGTTATCAGTCGACATGGAGCAACTACTTTCTCGTCGCCGCAGATACA
GGGCCAAATGTGCCAAGAGGAGTGTCCGCAAATTCTTACCCGATTTGAAG
TGCAAGTCTGTGGAACGCATTAAATGCCAGATTAAGGATCTGCTGATCTT
AATGGTTCCGTCCAAGGATTTCTATAAGAACTCGTTGCGGTTCTACAAGC
GCTGCACAAAACCAGATCGTCGGGAGTTCCAGCGTATCAGCATTGGCATT
GGCGTAGGATTCCTTATCATGGGCTTGATTGGATTCGTCGTTAAGCTGAT
GCACATACCCATAGTCAACATCATCATGGACTGAAAGCTTTCTAGACC
BS17257.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:12:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13426-PA | 318 | CG13426-RA | 1..318 | 17..334 | 1590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:04:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13426-RA | 418 | CG13426-RA | 58..375 | 17..334 | 1590 | 100 | Plus |
| CG8860-RA | 420 | CG8860-RA | 176..308 | 197..329 | 200 | 76.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:04:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20512740..20513006 | 334..68 | 1335 | 100 | Minus |
| 2R | 25286936 | 2R | 20513059..20513112 | 70..17 | 270 | 100 | Minus |
| 2R | 25286936 | 2R | 12179595..12179727 | 329..197 | 200 | 76.7 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:04:41 has no hits.
BS17257.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:12:20 Download gff for
BS17257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13426-PA | 1..318 | 17..334 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:39:45 Download gff for
BS17257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13426-RA | 58..380 | 17..339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:38:08 Download gff for
BS17257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13426-RA | 58..380 | 17..339 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:38:08 Download gff for
BS17257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20512735..20513004 | 70..339 | 99 | <- | Minus |
| 2R | 20513060..20513112 | 17..69 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:39:45 Download gff for
BS17257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16400240..16400509 | 70..339 | 99 | <- | Minus |
| arm_2R | 16400565..16400617 | 17..69 | 100 | <- | Minus |
BS17257.3prime Sequence
348 bp (348 high quality bases) assembled on 2007-05-15
> BS17257.3prime
ATGGTCTAGAAAGCTTTCACTCCATGATGATGTTGACTATGGGTATGTGC
ATCAGCTTAACGACGAATCCAATCAAGCCCATGATAAGGAATCCTACGCC
AATGCCAATGCTGATACGCTGGAACTCCCGACGATCTGGTTTTGTGCAGC
GCTTGTAGAACCGCAACGAGTTCTTATAGAAATCCTTGGACGGAACCATT
AAGATCAGCAGATCCTTAATCTGGCATTTAATGCGTTCCACAGACTTGCA
CTTCAAATCGGGTAAGAATTTGCGGACACTCCTCTTGGCACATTTGGCCC
TGTATCTGCGGCGACGAGAAAGTAGTTGCTCCATGTCGACTGATAACT
BS17257.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:18:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13426-PA | 318 | CG13426-RA | 1..314 | 334..21 | 1570 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:39:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13426-RA | 418 | CG13426-RA | 58..375 | 334..17 | 1575 | 99.7 | Minus |
| CG8860-RA | 420 | CG8860-RA | 176..308 | 154..22 | 200 | 76.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:39:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20512740..20513006 | 17..283 | 1320 | 99.6 | Plus |
| 2R | 25286936 | 2R | 20513059..20513112 | 281..334 | 270 | 100 | Plus |
| 2R | 25286936 | 2R | 12179595..12179727 | 22..154 | 200 | 76.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:39:26 has no hits.
BS17257.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:18:55 Download gff for
BS17257.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13426-PA | 1..318 | 17..334 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:49:21 Download gff for
BS17257.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13426-RA | 58..380 | 12..334 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:13:48 Download gff for
BS17257.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13426-RA | 58..380 | 12..334 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:13:48 Download gff for
BS17257.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20512735..20513004 | 12..281 | 98 | <- | Plus |
| 2R | 20513060..20513112 | 282..334 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:49:21 Download gff for
BS17257.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16400240..16400509 | 12..281 | 98 | <- | Plus |
| arm_2R | 16400565..16400617 | 282..334 | 100 | <- | Plus |
BS17257.pep Sequence
Translation from 16 to 333
> BS17257.pep
MEQLLSRRRRYRAKCAKRSVRKFLPDLKCKSVERIKCQIKDLLILMVPSK
DFYKNSLRFYKRCTKPDRREFQRISIGIGVGFLIMGLIGFVVKLMHIPIV
NIIMD*
BS17257.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:56:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13426-PA | 105 | CG13426-PA | 1..105 | 1..105 | 538 | 100 | Plus |
| Sec61gamma-PC | 68 | CG14214-PC | 10..66 | 48..104 | 196 | 64.9 | Plus |
| Sec61gamma-PB | 68 | CG14214-PB | 10..66 | 48..104 | 196 | 64.9 | Plus |
| Sec61gamma-PA | 68 | CG14214-PA | 10..66 | 48..104 | 196 | 64.9 | Plus |
| CG8860-PA | 68 | CG8860-PA | 10..66 | 48..104 | 196 | 64.9 | Plus |
