Clone BS17261 Report

Search the DGRC for BS17261

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:172
Well:61
Vector:pDNR-Dual
Associated Gene/TranscriptCG14370-RA
Protein status:BS17261.pep: full length peptide match
Sequenced Size:431

Clone Sequence Records

BS17261.complete Sequence

431 bp assembled on 2010-02-09

GenBank Submission: KX801493

> BS17261.complete
GAAGTTATCAGTCGACATGGTCAAGCATCTGGACAATGGACTTGTGTTCT
ACCGACTGATGCTGAGCTTTCCGCTAAGAATTGCACTGTATGCGGTGTAC
GTTTACCTGGAGAATTTGCTGGGGCTGATGCTTTTGATCCAGGAAGTTCT
GGTCCTTCAATTTCTATTCCTCTGCATGGTCATCCGGTGGGTATACCCAC
CGTGGCCAGCAAATGGTATCGCTTCATCGCTGAGGTTTCGCACACGGAAA
GCCCTCCAGATCTTCCTGACCATCTGGATCGTATTGCTCAACACGACCAC
CTATACGTGGAGCATCCCATGCCAGGGCATCATGCAACTCAGCCGACTAT
TCCGGATATGCGCCTATAGTCGCACCTGGATCATGATACAGCGCCACAAT
GGCGCCCGACGCTGAAAGCTTTCTAGACCAT

BS17261.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:59:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG14370-RA 399 CG14370-PA 1..399 17..415 1995 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG14370-RA 729 CG14370-RA 191..591 17..417 2005 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13588187..13588587 17..417 2005 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:59:10 has no hits.

BS17261.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:27 Download gff for BS17261.complete
Subject Subject Range Query Range Percent Splice Strand
CG14370-RA 1..399 17..415 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:13:53 Download gff for BS17261.complete
Subject Subject Range Query Range Percent Splice Strand
CG14370-RA 1..398 17..414 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:04 Download gff for BS17261.complete
Subject Subject Range Query Range Percent Splice Strand
CG14370-RA 191..588 17..414 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:27 Download gff for BS17261.complete
Subject Subject Range Query Range Percent Splice Strand
CG14370-RA 1..399 17..415 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:07 Download gff for BS17261.complete
Subject Subject Range Query Range Percent Splice Strand
CG14370-RA 191..588 17..414 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:07 Download gff for BS17261.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13588187..13588584 17..414 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:04 Download gff for BS17261.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9413909..9414306 17..414 100   Plus

BS17261.5prime Sequence

429 bp (429 high quality bases) assembled on 2007-05-15

> BS17261.5prime
GAAGTTATCAGTCGACATGGTCAAGCATCTGGACAATGGACTTGTGTTCT
ACCGACTGATGCTGAGCTTTCCGCTAAGAATTGCACTGTATGCGGTGTAC
GTTTACCTGGAGAATTTGCTGGGGCTGATGCTTTTGATCCAGGAAGTTCT
GGTCCTTCAATTTCTATTCCTCTGCATGGTCATCCGGTGGGTATACCCAC
CGTGGCCAGCAAATGGTATCGCTTCATCGCTGAGGTTTCGCACACGGAAA
GCCCTCCAGATCTTCCTGACCATCTGGATCGTATTGCTCAACACGACCAC
CTATACGTGGAGCATCCCATGCCAGGGCATCATGCAACTCAGCCGACTAT
TCCGGATATGCGCCTATAGTCGCACCTGGATCATGATACAGCGCCACAAT
GGCGCCCGACGCTGAAAGCTTTCTAGACC

BS17261.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:12:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG14370-PA 399 CG14370-RA 1..399 17..415 1995 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:24:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG14370-RA 729 CG14370-RA 191..591 17..417 2005 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:24:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13588187..13588587 17..417 2005 100 Plus
Blast to na_te.dros performed on 2015-02-11 02:24:45 has no hits.

BS17261.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:12:25 Download gff for BS17261.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14370-PA 1..399 17..415 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:59:51 Download gff for BS17261.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14370-RA 185..595 11..421 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:11:08 Download gff for BS17261.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14370-RA 185..595 11..421 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:11:08 Download gff for BS17261.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13588181..13588591 11..421 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:59:51 Download gff for BS17261.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9413903..9414313 11..421 98   Plus

BS17261.3prime Sequence

429 bp (429 high quality bases) assembled on 2007-05-15

> BS17261.3prime
ATGGTCTAGAAAGCTTTCAGCGTCGGGCGCCATTGTGGCGCTGTATCATG
ATCCAGGTGCGACTATAGGCGCATATCCGGAATAGTCGGCTGAGTTGCAT
GATGCCCTGGCATGGGATGCTCCACGTATAGGTGGTCGTGTTGAGCAATA
CGATCCAGATGGTCAGGAAGATCTGGAGGGCTTTCCGTGTGCGAAACCTC
AGCGATGAAGCGATACCATTTGCTGGCCACGGTGGGTATACCCACCGGAT
GACCATGCAGAGGAATAGAAATTGAAGGACCAGAACTTCCTGGATCAAAA
GCATCAGCCCCAGCAAATTCTCCAGGTAAACGTACACCGCATACAGTGCA
ATTCTTAGCGGAAAGCTCAGCATCAGTCGGTAGAACACAAGTCCATTGTC
CAGATGCTTGACCATGTCGACTGATAACT

BS17261.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:18:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG14370-PA 399 CG14370-RA 1..399 415..17 1995 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:28:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG14370-RA 729 CG14370-RA 191..591 415..15 2005 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:28:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13588187..13588587 415..15 2005 100 Minus
Blast to na_te.dros performed on 2015-02-13 15:28:22 has no hits.

BS17261.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:19:00 Download gff for BS17261.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14370-PA 1..399 17..415 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:16:57 Download gff for BS17261.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14370-RA 185..595 11..421 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:54:05 Download gff for BS17261.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14370-RA 185..595 11..421 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:54:05 Download gff for BS17261.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13588181..13588591 11..421 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:16:57 Download gff for BS17261.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9413903..9414313 11..421 98   Minus

BS17261.pep Sequence

Translation from 16 to 414

> BS17261.pep
MVKHLDNGLVFYRLMLSFPLRIALYAVYVYLENLLGLMLLIQEVLVLQFL
FLCMVIRWVYPPWPANGIASSLRFRTRKALQIFLTIWIVLLNTTTYTWSI
PCQGIMQLSRLFRICAYSRTWIMIQRHNGARR*

BS17261.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG14370-PA 132 CG14370-PA 1..132 1..132 693 100 Plus