Clone Sequence Records
BS17267.3prime Sequence
405 bp (405 high quality bases) assembled on 2007-05-15
> BS17267.3prime
ATGGTCTAGAAAGCTTTCACCAGTAAAGCAACAGCAAATAAAAGGGGCCC
AGACTGAGCACCATCAGCGGTACCATCATAATACCAAATAGACGCCAGTT
ATCGTGGAACTGCCTGGACACCTGGCCATCCATGTCCAGGCTGCTCCGAC
AGATTGGGCAACGCTTGGCCACCCAGTTGCGAGCTTCCCTGTACAGTGCT
AAACAGCTTTTGCAGAACGCATGATTGCAGTGCAGCTTCTCTGGATTCTG
TATGCGATCCAGGCAAAAGGCACACATATCCGGCTGATCCCCATCCTTAA
TCGTATCGAACAACGATGGATGATCGCCGTTCTCACTGGAGTAGTCGCTC
CGCAGACCAAAGTTCGTCGCATCGAGGCCCTGCTGTACCATGTCGACTGA
TAACT
BS17267.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:19:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17048-PA | 375 | CG17048-RA | 1..375 | 391..17 | 1875 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:59:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17048-RB | 712 | CG17048-RB | 167..542 | 391..16 | 1880 | 100 | Minus |
CG17048-RA | 592 | CG17048-RA | 167..542 | 391..16 | 1880 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:59:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13354043..13354333 | 101..391 | 1455 | 100 | Plus |
2R | 25286936 | 2R | 13353808..13353892 | 16..100 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:59:42 has no hits.
BS17267.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:19:05 Download gff for
BS17267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17048-PA | 1..375 | 17..391 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:47:59 Download gff for
BS17267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17048-RA | 185..572 | 7..399 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:07:11 Download gff for
BS17267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17048-RA | 163..550 | 7..399 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:07:11 Download gff for
BS17267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13353800..13353892 | 7..100 | 95 | <- | Plus |
2R | 13354043..13354337 | 101..399 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:47:59 Download gff for
BS17267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9241305..9241397 | 7..100 | 95 | <- | Plus |
arm_2R | 9241548..9241842 | 101..399 | 98 | | Plus |
BS17267.5prime Sequence
405 bp (405 high quality bases) assembled on 2007-05-15
> BS17267.5prime
GAAGTTATCAGTCGACATGGTACAGCAGGGCCTCGATGCGACGAACTTTG
GTCTGCGGAGCGACTACTCCAGTGAGAACGGCGATCATCCATCGTTGTTC
GATACGATTAAGGATGGGGATCAGCCGGATATGTGTGCCTTTTGCCTGGA
TCGCATACAGAATCCAGAGAAGCTGCACTGCAATCATGCGTTCTGCAAAA
GCTGTTTAGCACTGTACAGGGAAGCTCGCAACTGGGTGGCCAAGCGTTGC
CCAATCTGTCGGAGCAGCCTGGACATGGATGGCCAGGTGTCCAGGCAGTT
CCACGATAACTGGCGTCTATTTGGTATTATGATGGTACCGCTGATGGTGC
TCAGTCTGGGCCCCTTTTATTTGCTGTTGCTTTACTGGTGAAAGCTTTCT
AGACC
BS17267.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:12:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17048-PA | 375 | CG17048-RA | 1..375 | 17..391 | 1875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:07:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17048-RB | 712 | CG17048-RB | 167..542 | 17..392 | 1880 | 100 | Plus |
CG17048-RA | 592 | CG17048-RA | 167..542 | 17..392 | 1880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:07:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13354043..13354333 | 307..17 | 1455 | 100 | Minus |
2R | 25286936 | 2R | 13353808..13353892 | 392..308 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 21:07:34 has no hits.
BS17267.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:12:29 Download gff for
BS17267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17048-PA | 1..375 | 17..391 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:29:32 Download gff for
BS17267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17048-RA | 185..572 | 9..401 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:55:02 Download gff for
BS17267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17048-RA | 163..550 | 9..401 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:55:02 Download gff for
BS17267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13353800..13353892 | 308..401 | 95 | <- | Minus |
2R | 13354043..13354337 | 9..307 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:29:32 Download gff for
BS17267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9241305..9241397 | 308..401 | 95 | <- | Minus |
arm_2R | 9241548..9241842 | 9..307 | 98 | | Minus |
BS17267.complete Sequence
407 bp assembled on 2012-04-25
GenBank Submission: KX804401
> BS17267.complete
GAAGTTATCAGTCGACATGGTACAGCAGGGCCTCGATGCGACGAACTTTG
GTCTGCGGAGCGACTACTCCAGTGAGAACGGCGATCATCCATCGTTGTTC
GATACGATTAAGGATGGGGATCAGCCGGATATGTGTGCCTTTTGCCTGGA
TCGCATACAGAATCCAGAGAAGCTGCACTGCAATCATGCGTTCTGCAAAA
GCTGTTTAGCACTGTACAGGGAAGCTCGCAACTGGGTGGCCAAGCGTTGC
CCAATCTGTCGGAGCAGCCTGGACATGGATGGCCAGGTGTCCAGGCAGTT
CCACGATAACTGGCGTCTATTTGGTATTATGATGGTACCGCTGATGGTGC
TCAGTCTGGGCCCCTTTTATTTGCTGTTGCTTTACTGGTGAAAGCTTTCT
AGACCAT
BS17267.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:26:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17048-RB | 375 | CG17048-PB | 1..375 | 17..391 | 1875 | 100 | Plus |
CG17048-RA | 375 | CG17048-PA | 1..375 | 17..391 | 1875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:26:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17048-RB | 712 | CG17048-RB | 167..542 | 17..392 | 1880 | 100 | Plus |
CG17048-RA | 592 | CG17048-RA | 167..542 | 17..392 | 1880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:26:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13354043..13354333 | 307..17 | 1455 | 100 | Minus |
2R | 25286936 | 2R | 13353808..13353892 | 392..308 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:26:30 has no hits.
BS17267.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:18:05 Download gff for
BS17267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17048-RB | 136..509 | 17..390 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:03 Download gff for
BS17267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17048-RA | 189..562 | 17..390 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:04:12 Download gff for
BS17267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17048-RA | 167..540 | 17..390 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:04:12 Download gff for
BS17267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13354043..13354333 | 17..307 | 100 | | Minus |
2R | 13353810..13353892 | 308..390 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:03 Download gff for
BS17267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9241315..9241397 | 308..390 | 100 | <- | Minus |
arm_2R | 9241548..9241838 | 17..307 | 100 | | Minus |
BS17267.pep Sequence
Translation from 16 to 390
> BS17267.pep
MVQQGLDATNFGLRSDYSSENGDHPSLFDTIKDGDQPDMCAFCLDRIQNP
EKLHCNHAFCKSCLALYREARNWVAKRCPICRSSLDMDGQVSRQFHDNWR
LFGIMMVPLMVLSLGPFYLLLLYW*
BS17267.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:24:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17048-PB | 124 | CG17048-PB | 1..124 | 1..124 | 689 | 100 | Plus |
CG17048-PA | 124 | CG17048-PA | 1..124 | 1..124 | 689 | 100 | Plus |