Clone BS17267 Report

Search the DGRC for BS17267

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:172
Well:67
Vector:pDNR-Dual
Associated Gene/TranscriptCG17048-RA
Protein status:BS17267.pep: full length peptide match
Sequenced Size:407

Clone Sequence Records

BS17267.3prime Sequence

405 bp (405 high quality bases) assembled on 2007-05-15

> BS17267.3prime
ATGGTCTAGAAAGCTTTCACCAGTAAAGCAACAGCAAATAAAAGGGGCCC
AGACTGAGCACCATCAGCGGTACCATCATAATACCAAATAGACGCCAGTT
ATCGTGGAACTGCCTGGACACCTGGCCATCCATGTCCAGGCTGCTCCGAC
AGATTGGGCAACGCTTGGCCACCCAGTTGCGAGCTTCCCTGTACAGTGCT
AAACAGCTTTTGCAGAACGCATGATTGCAGTGCAGCTTCTCTGGATTCTG
TATGCGATCCAGGCAAAAGGCACACATATCCGGCTGATCCCCATCCTTAA
TCGTATCGAACAACGATGGATGATCGCCGTTCTCACTGGAGTAGTCGCTC
CGCAGACCAAAGTTCGTCGCATCGAGGCCCTGCTGTACCATGTCGACTGA
TAACT

BS17267.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:19:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG17048-PA 375 CG17048-RA 1..375 391..17 1875 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:59:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG17048-RB 712 CG17048-RB 167..542 391..16 1880 100 Minus
CG17048-RA 592 CG17048-RA 167..542 391..16 1880 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:59:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13354043..13354333 101..391 1455 100 Plus
2R 25286936 2R 13353808..13353892 16..100 425 100 Plus
Blast to na_te.dros performed on 2015-02-13 05:59:42 has no hits.

BS17267.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:19:05 Download gff for BS17267.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17048-PA 1..375 17..391 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:47:59 Download gff for BS17267.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17048-RA 185..572 7..399 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:07:11 Download gff for BS17267.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17048-RA 163..550 7..399 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:07:11 Download gff for BS17267.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13353800..13353892 7..100 95 <- Plus
2R 13354043..13354337 101..399 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:47:59 Download gff for BS17267.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9241305..9241397 7..100 95 <- Plus
arm_2R 9241548..9241842 101..399 98   Plus

BS17267.5prime Sequence

405 bp (405 high quality bases) assembled on 2007-05-15

> BS17267.5prime
GAAGTTATCAGTCGACATGGTACAGCAGGGCCTCGATGCGACGAACTTTG
GTCTGCGGAGCGACTACTCCAGTGAGAACGGCGATCATCCATCGTTGTTC
GATACGATTAAGGATGGGGATCAGCCGGATATGTGTGCCTTTTGCCTGGA
TCGCATACAGAATCCAGAGAAGCTGCACTGCAATCATGCGTTCTGCAAAA
GCTGTTTAGCACTGTACAGGGAAGCTCGCAACTGGGTGGCCAAGCGTTGC
CCAATCTGTCGGAGCAGCCTGGACATGGATGGCCAGGTGTCCAGGCAGTT
CCACGATAACTGGCGTCTATTTGGTATTATGATGGTACCGCTGATGGTGC
TCAGTCTGGGCCCCTTTTATTTGCTGTTGCTTTACTGGTGAAAGCTTTCT
AGACC

BS17267.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:12:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG17048-PA 375 CG17048-RA 1..375 17..391 1875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:07:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG17048-RB 712 CG17048-RB 167..542 17..392 1880 100 Plus
CG17048-RA 592 CG17048-RA 167..542 17..392 1880 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:07:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13354043..13354333 307..17 1455 100 Minus
2R 25286936 2R 13353808..13353892 392..308 425 100 Minus
Blast to na_te.dros performed on 2015-02-04 21:07:34 has no hits.

BS17267.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:12:29 Download gff for BS17267.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17048-PA 1..375 17..391 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:29:32 Download gff for BS17267.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17048-RA 185..572 9..401 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:55:02 Download gff for BS17267.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17048-RA 163..550 9..401 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:55:02 Download gff for BS17267.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13353800..13353892 308..401 95 <- Minus
2R 13354043..13354337 9..307 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:29:32 Download gff for BS17267.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9241305..9241397 308..401 95 <- Minus
arm_2R 9241548..9241842 9..307 98   Minus

BS17267.complete Sequence

407 bp assembled on 2012-04-25

GenBank Submission: KX804401

> BS17267.complete
GAAGTTATCAGTCGACATGGTACAGCAGGGCCTCGATGCGACGAACTTTG
GTCTGCGGAGCGACTACTCCAGTGAGAACGGCGATCATCCATCGTTGTTC
GATACGATTAAGGATGGGGATCAGCCGGATATGTGTGCCTTTTGCCTGGA
TCGCATACAGAATCCAGAGAAGCTGCACTGCAATCATGCGTTCTGCAAAA
GCTGTTTAGCACTGTACAGGGAAGCTCGCAACTGGGTGGCCAAGCGTTGC
CCAATCTGTCGGAGCAGCCTGGACATGGATGGCCAGGTGTCCAGGCAGTT
CCACGATAACTGGCGTCTATTTGGTATTATGATGGTACCGCTGATGGTGC
TCAGTCTGGGCCCCTTTTATTTGCTGTTGCTTTACTGGTGAAAGCTTTCT
AGACCAT

BS17267.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG17048-RB 375 CG17048-PB 1..375 17..391 1875 100 Plus
CG17048-RA 375 CG17048-PA 1..375 17..391 1875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:26:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG17048-RB 712 CG17048-RB 167..542 17..392 1880 100 Plus
CG17048-RA 592 CG17048-RA 167..542 17..392 1880 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:26:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13354043..13354333 307..17 1455 100 Minus
2R 25286936 2R 13353808..13353892 392..308 425 100 Minus
Blast to na_te.dros performed on 2014-11-28 12:26:30 has no hits.

BS17267.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:18:05 Download gff for BS17267.complete
Subject Subject Range Query Range Percent Splice Strand
CG17048-RB 136..509 17..390 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:03 Download gff for BS17267.complete
Subject Subject Range Query Range Percent Splice Strand
CG17048-RA 189..562 17..390 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:04:12 Download gff for BS17267.complete
Subject Subject Range Query Range Percent Splice Strand
CG17048-RA 167..540 17..390 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:04:12 Download gff for BS17267.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13354043..13354333 17..307 100   Minus
2R 13353810..13353892 308..390 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:03 Download gff for BS17267.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9241315..9241397 308..390 100 <- Minus
arm_2R 9241548..9241838 17..307 100   Minus

BS17267.pep Sequence

Translation from 16 to 390

> BS17267.pep
MVQQGLDATNFGLRSDYSSENGDHPSLFDTIKDGDQPDMCAFCLDRIQNP
EKLHCNHAFCKSCLALYREARNWVAKRCPICRSSLDMDGQVSRQFHDNWR
LFGIMMVPLMVLSLGPFYLLLLYW*

BS17267.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:24:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG17048-PB 124 CG17048-PB 1..124 1..124 689 100 Plus
CG17048-PA 124 CG17048-PA 1..124 1..124 689 100 Plus