Clone BS17277 Report

Search the DGRC for BS17277

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:172
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG15434-RA
Protein status:BS17277.pep: full length peptide match
Sequenced Size:320

Clone Sequence Records

BS17277.complete Sequence

320 bp assembled on 2010-02-09

GenBank Submission: KX803654

> BS17277.complete
GAAGTTATCAGTCGACATGGGTATTACTCTGTTCCGATTGGCCAGTTTTA
CTCCAAAACTGAAGGAGCTGCGAATCATTCTGGATCCCAAAGGAGACACT
TCCAAGGGAGTCAGGGAATACGTGGAAAGGTTCTATCCAAACCTGAAGAA
GAGCAATCCCGACCTGCCGATCCTCGTGCGCGAGTGCTCTGGCGTCCAGC
CCCGCCTCTACGCCCGCTATGGCAACGGCAAGGAAGTGTCCCTCTCCCTG
GCCAACCACGCTGCTCCTGACATACACAAAAACCTGGAAGCGGTTGGCAA
ATAGAAGCTTTCTAGACCAT

BS17277.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:40:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG15434-RA 288 CG15434-PA 1..288 17..304 1440 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG15434-RA 460 CG15434-RA 104..393 17..306 1450 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:40:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4454885..4454995 112..222 555 100 Plus
2L 23513712 2L 4454729..4454827 17..115 495 100 Plus
2L 23513712 2L 4455055..4455140 221..306 430 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:40:34 has no hits.

BS17277.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:28 Download gff for BS17277.complete
Subject Subject Range Query Range Percent Splice Strand
CG15434-RA 1..288 17..304 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:13:04 Download gff for BS17277.complete
Subject Subject Range Query Range Percent Splice Strand
CG15434-RA 65..346 17..298 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:19 Download gff for BS17277.complete
Subject Subject Range Query Range Percent Splice Strand
CG15434-RA 104..385 17..298 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:28 Download gff for BS17277.complete
Subject Subject Range Query Range Percent Splice Strand
CG15434-RA 65..357 17..310 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:34:26 Download gff for BS17277.complete
Subject Subject Range Query Range Percent Splice Strand
CG15434-RA 104..385 17..298 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:34:26 Download gff for BS17277.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4454729..4454826 17..114 100 -> Plus
2L 4454888..4454994 115..221 100 -> Plus
2L 4455056..4455132 222..298 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:19 Download gff for BS17277.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4454729..4454826 17..114 100 -> Plus
arm_2L 4454888..4454994 115..221 100 -> Plus
arm_2L 4455056..4455132 222..298 100   Plus

BS17277.3prime Sequence

318 bp (318 high quality bases) assembled on 2007-05-15

> BS17277.3prime
ATGGTCTAGAAAGCTTCTATTTGCCAACCGCTTCCAGGTTTTTGTGTATG
TCAGGAGCAGCGTGGTTGGCCAGGGAGAGGGACACTTCCTTGCCGTTGCC
ATAGCGGGCGTAGAGGCGGGGCTGGACGCCAGAGCACTCGCGCACGAGGA
TCGGCAGGTCGGGATTGCTCTTCTTCAGGTTTGGATAGAACCTTTCCACG
TATTCCCTGACTCCCTTGGAAGTGTCTCCTTTGGGATCCAGAATGATTCG
CAGCTCCTTCAGTTTTGGAGTAAAACTGGCCAATCGGAACAGAGTAATAC
CCATGTCGACTGATAACT

BS17277.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:23:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG15434-PA 288 CG15434-RA 1..288 304..17 1440 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:07:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG15434-RA 460 CG15434-RA 104..393 304..15 1450 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:07:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4454885..4454995 209..99 555 100 Minus
2L 23513712 2L 4454729..4454827 304..206 495 100 Minus
2L 23513712 2L 4455055..4455140 100..15 430 100 Minus
Blast to na_te.dros performed on 2015-02-11 04:07:53 has no hits.

BS17277.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:23:07 Download gff for BS17277.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15434-PA 1..288 17..304 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:28:09 Download gff for BS17277.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15434-RA 104..396 11..304 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:38:09 Download gff for BS17277.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15434-RA 104..396 11..304 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:38:09 Download gff for BS17277.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 4454888..4454994 100..206 100 -> Minus
2L 4455056..4455143 11..99 98   Minus
2L 4454729..4454826 207..304 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:28:09 Download gff for BS17277.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4454729..4454826 207..304 100 -> Minus
arm_2L 4454888..4454994 100..206 100 -> Minus
arm_2L 4455056..4455143 11..99 98   Minus

BS17277.5prime Sequence

318 bp (318 high quality bases) assembled on 2007-05-15

> BS17277.5prime
GAAGTTATCAGTCGACATGGGTATTACTCTGTTCCGATTGGCCAGTTTTA
CTCCAAAACTGAAGGAGCTGCGAATCATTCTGGATCCCAAAGGAGACACT
TCCAAGGGAGTCAGGGAATACGTGGAAAGGTTCTATCCAAACCTGAAGAA
GAGCAATCCCGACCTGCCGATCCTCGTGCGCGAGTGCTCTGGCGTCCAGC
CCCGCCTCTACGCCCGCTATGGCAACGGCAAGGAAGTGTCCCTCTCCCTG
GCCAACCACGCTGCTCCTGACATACACAAAAACCTGGAAGCGGTTGGCAA
ATAGAAGCTTTCTAGACC

BS17277.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:16:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG15434-PA 288 CG15434-RA 1..288 17..304 1440 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:59:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG15434-RA 460 CG15434-RA 104..393 17..306 1450 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:58:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4454885..4454995 112..222 555 100 Plus
2L 23513712 2L 4454729..4454827 17..115 495 100 Plus
2L 23513712 2L 4455055..4455140 221..306 430 100 Plus
Blast to na_te.dros performed on 2015-02-13 05:59:00 has no hits.

BS17277.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:16:07 Download gff for BS17277.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15434-PA 1..288 17..304 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:47:37 Download gff for BS17277.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15434-RA 104..396 17..310 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:05:32 Download gff for BS17277.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15434-RA 104..396 17..310 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:05:32 Download gff for BS17277.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 4454719..4454826 11..114 94 -> Plus
2L 4454888..4454994 115..221 100 -> Plus
2L 4455056..4455143 222..310 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:47:37 Download gff for BS17277.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4454719..4454826 11..114 94 -> Plus
arm_2L 4454888..4454994 115..221 100 -> Plus
arm_2L 4455056..4455143 222..310 98   Plus

BS17277.pep Sequence

Translation from 16 to 303

> BS17277.pep
MGITLFRLASFTPKLKELRIILDPKGDTSKGVREYVERFYPNLKKSNPDL
PILVRECSGVQPRLYARYGNGKEVSLSLANHAAPDIHKNLEAVGK*

BS17277.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:53:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG15434-PA 95 CG15434-PA 1..95 1..95 491 100 Plus