Clone Sequence Records
BS17277.complete Sequence
320 bp assembled on 2010-02-09
GenBank Submission: KX803654
> BS17277.complete
GAAGTTATCAGTCGACATGGGTATTACTCTGTTCCGATTGGCCAGTTTTA
CTCCAAAACTGAAGGAGCTGCGAATCATTCTGGATCCCAAAGGAGACACT
TCCAAGGGAGTCAGGGAATACGTGGAAAGGTTCTATCCAAACCTGAAGAA
GAGCAATCCCGACCTGCCGATCCTCGTGCGCGAGTGCTCTGGCGTCCAGC
CCCGCCTCTACGCCCGCTATGGCAACGGCAAGGAAGTGTCCCTCTCCCTG
GCCAACCACGCTGCTCCTGACATACACAAAAACCTGGAAGCGGTTGGCAA
ATAGAAGCTTTCTAGACCAT
BS17277.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:40:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15434-RA | 288 | CG15434-PA | 1..288 | 17..304 | 1440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:40:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15434-RA | 460 | CG15434-RA | 104..393 | 17..306 | 1450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:40:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4454885..4454995 | 112..222 | 555 | 100 | Plus |
2L | 23513712 | 2L | 4454729..4454827 | 17..115 | 495 | 100 | Plus |
2L | 23513712 | 2L | 4455055..4455140 | 221..306 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:40:34 has no hits.
BS17277.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:28 Download gff for
BS17277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15434-RA | 1..288 | 17..304 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:13:04 Download gff for
BS17277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15434-RA | 65..346 | 17..298 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:19 Download gff for
BS17277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15434-RA | 104..385 | 17..298 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:28 Download gff for
BS17277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15434-RA | 65..357 | 17..310 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:34:26 Download gff for
BS17277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15434-RA | 104..385 | 17..298 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:34:26 Download gff for
BS17277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4454729..4454826 | 17..114 | 100 | -> | Plus |
2L | 4454888..4454994 | 115..221 | 100 | -> | Plus |
2L | 4455056..4455132 | 222..298 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:19 Download gff for
BS17277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4454729..4454826 | 17..114 | 100 | -> | Plus |
arm_2L | 4454888..4454994 | 115..221 | 100 | -> | Plus |
arm_2L | 4455056..4455132 | 222..298 | 100 | | Plus |
BS17277.3prime Sequence
318 bp (318 high quality bases) assembled on 2007-05-15
> BS17277.3prime
ATGGTCTAGAAAGCTTCTATTTGCCAACCGCTTCCAGGTTTTTGTGTATG
TCAGGAGCAGCGTGGTTGGCCAGGGAGAGGGACACTTCCTTGCCGTTGCC
ATAGCGGGCGTAGAGGCGGGGCTGGACGCCAGAGCACTCGCGCACGAGGA
TCGGCAGGTCGGGATTGCTCTTCTTCAGGTTTGGATAGAACCTTTCCACG
TATTCCCTGACTCCCTTGGAAGTGTCTCCTTTGGGATCCAGAATGATTCG
CAGCTCCTTCAGTTTTGGAGTAAAACTGGCCAATCGGAACAGAGTAATAC
CCATGTCGACTGATAACT
BS17277.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:23:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15434-PA | 288 | CG15434-RA | 1..288 | 304..17 | 1440 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:07:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15434-RA | 460 | CG15434-RA | 104..393 | 304..15 | 1450 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:07:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4454885..4454995 | 209..99 | 555 | 100 | Minus |
2L | 23513712 | 2L | 4454729..4454827 | 304..206 | 495 | 100 | Minus |
2L | 23513712 | 2L | 4455055..4455140 | 100..15 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:07:53 has no hits.
BS17277.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:23:07 Download gff for
BS17277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15434-PA | 1..288 | 17..304 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:28:09 Download gff for
BS17277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15434-RA | 104..396 | 11..304 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:38:09 Download gff for
BS17277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15434-RA | 104..396 | 11..304 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:38:09 Download gff for
BS17277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4454888..4454994 | 100..206 | 100 | -> | Minus |
2L | 4455056..4455143 | 11..99 | 98 | | Minus |
2L | 4454729..4454826 | 207..304 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:28:09 Download gff for
BS17277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4454729..4454826 | 207..304 | 100 | -> | Minus |
arm_2L | 4454888..4454994 | 100..206 | 100 | -> | Minus |
arm_2L | 4455056..4455143 | 11..99 | 98 | | Minus |
BS17277.5prime Sequence
318 bp (318 high quality bases) assembled on 2007-05-15
> BS17277.5prime
GAAGTTATCAGTCGACATGGGTATTACTCTGTTCCGATTGGCCAGTTTTA
CTCCAAAACTGAAGGAGCTGCGAATCATTCTGGATCCCAAAGGAGACACT
TCCAAGGGAGTCAGGGAATACGTGGAAAGGTTCTATCCAAACCTGAAGAA
GAGCAATCCCGACCTGCCGATCCTCGTGCGCGAGTGCTCTGGCGTCCAGC
CCCGCCTCTACGCCCGCTATGGCAACGGCAAGGAAGTGTCCCTCTCCCTG
GCCAACCACGCTGCTCCTGACATACACAAAAACCTGGAAGCGGTTGGCAA
ATAGAAGCTTTCTAGACC
BS17277.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:16:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15434-PA | 288 | CG15434-RA | 1..288 | 17..304 | 1440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:59:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15434-RA | 460 | CG15434-RA | 104..393 | 17..306 | 1450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:58:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4454885..4454995 | 112..222 | 555 | 100 | Plus |
2L | 23513712 | 2L | 4454729..4454827 | 17..115 | 495 | 100 | Plus |
2L | 23513712 | 2L | 4455055..4455140 | 221..306 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:59:00 has no hits.
BS17277.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:16:07 Download gff for
BS17277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15434-PA | 1..288 | 17..304 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:47:37 Download gff for
BS17277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15434-RA | 104..396 | 17..310 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:05:32 Download gff for
BS17277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15434-RA | 104..396 | 17..310 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:05:32 Download gff for
BS17277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4454719..4454826 | 11..114 | 94 | -> | Plus |
2L | 4454888..4454994 | 115..221 | 100 | -> | Plus |
2L | 4455056..4455143 | 222..310 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:47:37 Download gff for
BS17277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4454719..4454826 | 11..114 | 94 | -> | Plus |
arm_2L | 4454888..4454994 | 115..221 | 100 | -> | Plus |
arm_2L | 4455056..4455143 | 222..310 | 98 | | Plus |
BS17277.pep Sequence
Translation from 16 to 303
> BS17277.pep
MGITLFRLASFTPKLKELRIILDPKGDTSKGVREYVERFYPNLKKSNPDL
PILVRECSGVQPRLYARYGNGKEVSLSLANHAAPDIHKNLEAVGK*
BS17277.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:53:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15434-PA | 95 | CG15434-PA | 1..95 | 1..95 | 491 | 100 | Plus |